Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05485

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,153,106	+		HGI48_RS05480	0.60	-0.4
1,153,412	+		HGI48_RS05480	0.85	+1.6
1,153,412	+		HGI48_RS05480	0.85	+1.0
1,153,413	-		HGI48_RS05480	0.85	-1.6
1,153,428	-		HGI48_RS05480	0.86	+0.1
1,153,465	+		HGI48_RS05480	0.89	+0.8
1,153,465	+				+0.2
1,153,466	-				+1.2
1,153,468	+		HGI48_RS05480	0.89	-0.0
1,153,468	+		HGI48_RS05480	0.89	-0.0
1,153,468	+				-1.2
1,153,468	+		HGI48_RS05480	0.89	-0.4
1,153,468	+				+1.3
1,153,469	-		HGI48_RS05480	0.89	-0.0
1,153,469	-		HGI48_RS05480	0.89	+1.9
1,153,469	-		HGI48_RS05480	0.89	-0.4
1,153,469	-		HGI48_RS05480	0.89	-1.5
1,153,471	+		HGI48_RS05480	0.90	+0.3
1,153,471	+		HGI48_RS05480	0.90	-0.4
1,153,472	-		HGI48_RS05480	0.90	+0.3
1,153,472	-		HGI48_RS05480	0.90	-0.9
1,153,487	+				+0.6
1,153,487	+				+1.1
1,153,487	+				-0.2
1,153,553	+				-0.4
1,153,553	+				+0.9
1,153,554	-				-0.0
1,153,554	-				-0.7
1,153,591	-				+0.1
1,153,591	-				-0.4
1,153,593	+				-0.4
1,153,593	+				+0.2
1,153,593	+				-0.6
1,153,593	+				-0.0
1,153,594	-				+1.0
1,153,644	+				-1.4
1,153,644	+				-0.8
1,153,645	-				-1.0
1,153,645	-				+0.6
1,153,692	+				-0.8
1,153,692	+				-0.4
1,153,692	+				+0.1
1,153,692	+				-0.4
1,153,692	+				+1.6
1,153,692	+				-1.0
1,153,692	+				-0.4
1,153,692	+				-0.8
1,153,692	+				-2.7
1,153,692	+				-1.3
1,153,693	-				-0.0
1,153,693	-				-0.4
1,153,693	-				-0.6
1,153,693	-				-0.7
1,153,693	-				+0.6
1,153,693	-				-0.3
1,153,693	-				+0.2
1,153,693	-				-0.0
1,153,733	+				+0.9
1,153,733	+				+0.7
1,153,734	-				-0.0
1,153,734	-				-0.0
1,153,763	+				+0.1
1,153,763	+				-0.4
1,153,763	+				+0.6
1,153,763	+				+0.3
1,153,763	+				+0.2
1,153,763	+				-0.4
1,153,764	-				-0.4
1,153,764	-				+0.3
1,153,764	-				+0.4
1,153,764	-				-0.0
1,153,764	-				-0.3
1,153,764	-				+1.1
1,153,764	-				-0.0
1,153,764	-				+0.3
1,153,764	-				+2.9
1,153,770	-				+0.2
1,153,844	-				-1.0
1,153,928	+				-0.4
1,153,940	-				-0.6
1,153,952	+				-1.0
1,153,952	+				+0.3
1,153,953	-				-1.0
1,153,997	+				-0.3
1,154,009	+				-0.0
1,154,009	+				+0.8
1,154,010	-				-0.8
1,154,010	-				-0.8
1,154,143	+		HGI48_RS05485	0.21	-0.2
1,154,143	+		HGI48_RS05485	0.21	-2.0
1,154,144	-		HGI48_RS05485	0.21	-1.8
1,154,144	-		HGI48_RS05485	0.21	+0.3
1,154,144	-		HGI48_RS05485	0.21	-1.0
1,154,189	+		HGI48_RS05485	0.28	-0.0
1,154,189	+		HGI48_RS05485	0.28	-1.0
1,154,301	+		HGI48_RS05485	0.44	-0.1
1,154,301	+		HGI48_RS05485	0.44	-0.4
1,154,301	+		HGI48_RS05485	0.44	-0.4
1,154,301	+		HGI48_RS05485	0.44	-0.4
1,154,302	-		HGI48_RS05485	0.44	+1.1
1,154,302	-		HGI48_RS05485	0.44	+0.6
1,154,302	-				-0.8
1,154,302	-				-0.8
1,154,302	-		HGI48_RS05485	0.44	-0.2
1,154,302	-		HGI48_RS05485	0.44	-0.4
1,154,496	-		HGI48_RS05485	0.72	-0.8
1,154,515	+		HGI48_RS05485	0.75	-0.3
1,154,515	+		HGI48_RS05485	0.75	-1.4
1,154,515	+		HGI48_RS05485	0.75	-1.3
1,154,516	-		HGI48_RS05485	0.75	-1.4
1,154,517	+				-0.4
1,154,517	+		HGI48_RS05485	0.75	+1.2
1,154,517	+		HGI48_RS05485	0.75	-0.4
1,154,517	+		HGI48_RS05485	0.75	+0.7
1,154,517	+		HGI48_RS05485	0.75	+0.6
1,154,517	+		HGI48_RS05485	0.75	+1.0
1,154,517	+		HGI48_RS05485	0.75	+1.0
1,154,517	+		HGI48_RS05485	0.75	+0.6
1,154,517	+		HGI48_RS05485	0.75	-0.4
1,154,517	+		HGI48_RS05485	0.75	-0.6
1,154,517	+		HGI48_RS05485	0.75	+0.6
1,154,517	+		HGI48_RS05485	0.75	+0.6
1,154,517	+		HGI48_RS05485	0.75	+1.6
1,154,517	+		HGI48_RS05485	0.75	+1.6
1,154,518	-		HGI48_RS05485	0.75	-0.2
1,154,518	-		HGI48_RS05485	0.75	-0.1
1,154,518	-		HGI48_RS05485	0.75	+1.0
1,154,518	-		HGI48_RS05485	0.75	-1.3
1,154,518	-		HGI48_RS05485	0.75	-0.8
1,154,518	-		HGI48_RS05485	0.75	-1.0
1,154,518	-		HGI48_RS05485	0.75	-1.3
1,154,518	-		HGI48_RS05485	0.75	-1.6
1,154,518	-		HGI48_RS05485	0.75	-0.4
1,154,518	-		HGI48_RS05485	0.75	+0.6
1,154,518	-		HGI48_RS05485	0.75	+1.9
1,154,519	+		HGI48_RS05485	0.76	-0.2
1,154,519	+				-1.8
1,154,519	+		HGI48_RS05485	0.76	-1.0
1,154,519	+		HGI48_RS05485	0.76	+0.2
1,154,520	-		HGI48_RS05485	0.76	-0.4
1,154,520	-		HGI48_RS05485	0.76	+0.7
1,154,520	-				-0.8
1,154,520	-		HGI48_RS05485	0.76	-0.1
1,154,545	+		HGI48_RS05485	0.79	-0.1
1,154,545	+				+0.3
1,154,562	+		HGI48_RS05485	0.82	-0.4
1,154,562	+		HGI48_RS05485	0.82	+0.3
1,154,562	+		HGI48_RS05485	0.82	-1.0
1,154,563	-				+1.1
1,154,563	-		HGI48_RS05485	0.82	-0.4
1,154,563	-		HGI48_RS05485	0.82	-1.0
1,154,592	-		HGI48_RS05485	0.86	-0.8
1,154,683	-				-0.8
1,154,689	-				-1.3
1,154,719	+				-0.2
1,154,719	+				+0.6
1,154,719	+				+0.6
1,154,720	-				+0.6
1,154,720	-				+0.1
1,154,803	-				-0.0
1,154,856	+				-0.8
1,154,856	+		HGI48_RS05490	0.11	+1.6
1,154,856	+		HGI48_RS05490	0.11	+0.6
1,154,856	+		HGI48_RS05490	0.11	+1.0
1,154,856	+		HGI48_RS05490	0.11	+0.4
1,154,857	-		HGI48_RS05490	0.11	-0.4
1,154,857	-		HGI48_RS05490	0.11	-0.6
1,154,857	-				-1.3
1,154,857	-		HGI48_RS05490	0.11	-1.3
1,154,857	-				+0.7
1,154,857	-		HGI48_RS05490	0.11	+0.7
1,154,943	+		HGI48_RS05490	0.17	+0.4
1,154,944	-		HGI48_RS05490	0.17	-0.8
1,154,944	-		HGI48_RS05490	0.17	-0.4
1,154,952	+		HGI48_RS05490	0.18	-1.3
1,154,952	+		HGI48_RS05490	0.18	-2.3
1,154,952	+		HGI48_RS05490	0.18	-0.4
1,154,952	+		HGI48_RS05490	0.18	+1.3
1,154,953	-		HGI48_RS05490	0.18	+1.6
1,154,953	-		HGI48_RS05490	0.18	-0.3
1,154,953	-				+1.0
1,154,953	-		HGI48_RS05490	0.18	+1.3
1,155,018	-		HGI48_RS05490	0.23	-0.0
1,155,107	+		HGI48_RS05490	0.30	-0.6
1,155,107	+		HGI48_RS05490	0.30	-0.1
1,155,108	-		HGI48_RS05490	0.30	-1.0
1,155,177	+		HGI48_RS05490	0.35	-2.3
1,155,178	-		HGI48_RS05490	0.35	-1.3
1,155,178	-		HGI48_RS05490	0.35	-0.1
1,155,178	-		HGI48_RS05490	0.35	+1.0
1,155,178	-		HGI48_RS05490	0.35	-0.0