Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01850 and HGI48_RS01855 are separated by 92 nucleotides HGI48_RS01855 and HGI48_RS01860 are separated by 25 nucleotides HGI48_RS01860 and HGI48_RS01865 overlap by 4 nucleotides HGI48_RS01865 and HGI48_RS01870 overlap by 7 nucleotides
HGI48_RS01850: HGI48_RS01850 - ABC transporter ATP-binding protein, at 411,102 to 412,697
_RS01850
HGI48_RS01855: HGI48_RS01855 - proteasome-type protease, at 412,790 to 413,539
_RS01855
HGI48_RS01860: HGI48_RS01860 - transglutaminase family protein, at 413,565 to 414,392
_RS01860
HGI48_RS01865: HGI48_RS01865 - alpha-E domain-containing protein, at 414,389 to 415,318
_RS01865
HGI48_RS01870: HGI48_RS01870 - circularly permuted type 2 ATP-grasp protein, at 415,312 to 416,751
_RS01870
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 412.620 kb on + strand at 412.621 kb on - strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.765 kb on + strand at 412.766 kb on - strand at 412.766 kb on - strand at 412.791 kb on + strand at 412.843 kb on + strand at 412.843 kb on + strand at 412.843 kb on + strand at 412.844 kb on - strand at 412.844 kb on - strand at 412.887 kb on + strand at 412.887 kb on + strand, within HGI48_RS01855 at 412.887 kb on + strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 412.888 kb on - strand, within HGI48_RS01855 at 413.103 kb on + strand, within HGI48_RS01855 at 413.129 kb on - strand, within HGI48_RS01855 at 413.295 kb on + strand, within HGI48_RS01855 at 413.295 kb on + strand, within HGI48_RS01855 at 413.295 kb on + strand, within HGI48_RS01855 at 413.296 kb on - strand, within HGI48_RS01855 at 413.326 kb on + strand at 413.326 kb on + strand, within HGI48_RS01855 at 413.326 kb on + strand at 413.326 kb on + strand, within HGI48_RS01855 at 413.327 kb on - strand at 413.532 kb on + strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.533 kb on - strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.539 kb on + strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.540 kb on - strand at 413.555 kb on + strand at 413.556 kb on - strand at 413.559 kb on + strand at 413.677 kb on + strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860 at 413.678 kb on - strand, within HGI48_RS01860 at 413.726 kb on + strand, within HGI48_RS01860 at 413.726 kb on + strand, within HGI48_RS01860 at 413.726 kb on + strand, within HGI48_RS01860 at 413.727 kb on - strand, within HGI48_RS01860 at 413.727 kb on - strand, within HGI48_RS01860 at 413.727 kb on - strand, within HGI48_RS01860 at 413.813 kb on - strand, within HGI48_RS01860 at 413.819 kb on - strand, within HGI48_RS01860 at 413.871 kb on + strand, within HGI48_RS01860 at 413.871 kb on + strand, within HGI48_RS01860 at 413.871 kb on + strand, within HGI48_RS01860 at 413.871 kb on + strand, within HGI48_RS01860 at 413.871 kb on + strand, within HGI48_RS01860 at 413.871 kb on + strand, within HGI48_RS01860 at 413.872 kb on - strand, within HGI48_RS01860 at 413.872 kb on - strand at 413.872 kb on - strand, within HGI48_RS01860 at 413.872 kb on - strand, within HGI48_RS01860 at 413.872 kb on - strand, within HGI48_RS01860 at 413.872 kb on - strand, within HGI48_RS01860 at 413.954 kb on + strand, within HGI48_RS01860 at 413.954 kb on + strand, within HGI48_RS01860 at 413.954 kb on + strand, within HGI48_RS01860 at 413.955 kb on - strand, within HGI48_RS01860 at 413.955 kb on - strand, within HGI48_RS01860 at 413.956 kb on + strand, within HGI48_RS01860 at 413.956 kb on + strand, within HGI48_RS01860 at 413.957 kb on - strand, within HGI48_RS01860 at 414.023 kb on - strand, within HGI48_RS01860 at 414.025 kb on + strand, within HGI48_RS01860 at 414.067 kb on - strand, within HGI48_RS01860 at 414.132 kb on + strand, within HGI48_RS01860 at 414.132 kb on + strand, within HGI48_RS01860 at 414.132 kb on + strand, within HGI48_RS01860 at 414.133 kb on - strand, within HGI48_RS01860 at 414.133 kb on - strand, within HGI48_RS01860 at 414.133 kb on - strand, within HGI48_RS01860 at 414.133 kb on - strand, within HGI48_RS01860 at 414.133 kb on - strand, within HGI48_RS01860 at 414.133 kb on - strand, within HGI48_RS01860 at 414.233 kb on - strand at 414.326 kb on - strand at 414.326 kb on - strand at 414.406 kb on - strand at 414.406 kb on - strand at 414.409 kb on + strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.410 kb on - strand at 414.463 kb on - strand at 414.628 kb on + strand, within HGI48_RS01865 at 414.629 kb on - strand, within HGI48_RS01865 at 414.629 kb on - strand, within HGI48_RS01865 at 414.632 kb on + strand at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.633 kb on - strand, within HGI48_RS01865 at 414.678 kb on + strand at 414.679 kb on - strand, within HGI48_RS01865 at 414.690 kb on + strand, within HGI48_RS01865 at 414.716 kb on + strand, within HGI48_RS01865 at 414.736 kb on - strand, within HGI48_RS01865 at 414.738 kb on + strand, within HGI48_RS01865 at 414.739 kb on - strand, within HGI48_RS01865 at 414.739 kb on - strand, within HGI48_RS01865 at 414.965 kb on - strand, within HGI48_RS01865 at 415.057 kb on + strand at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.065 kb on + strand, within HGI48_RS01865 at 415.066 kb on - strand at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.066 kb on - strand, within HGI48_RS01865 at 415.134 kb on + strand, within HGI48_RS01865 at 415.135 kb on - strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.159 kb on + strand, within HGI48_RS01865 at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.230 kb on + strand at 415.231 kb on - strand at 415.231 kb on - strand at 415.231 kb on - strand at 415.290 kb on + strand at 415.291 kb on - strand at 415.313 kb on + strand at 415.313 kb on + strand at 415.314 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 412,620 + +0.9 412,621 - -1.8 412,765 + +0.3 412,765 + +0.1 412,765 + -2.4 412,765 + -0.0 412,765 + -1.3 412,766 - -1.6 412,766 - -1.1 412,791 + +0.9 412,843 + -0.3 412,843 + +0.3 412,843 + +0.6 412,844 - +1.9 412,844 - +0.0 412,887 + +0.1 412,887 + HGI48_RS01855 0.13 +0.3 412,887 + HGI48_RS01855 0.13 +0.4 412,888 - HGI48_RS01855 0.13 -0.3 412,888 - HGI48_RS01855 0.13 +0.3 412,888 - HGI48_RS01855 0.13 +0.4 412,888 - HGI48_RS01855 0.13 -2.1 412,888 - HGI48_RS01855 0.13 -1.5 412,888 - HGI48_RS01855 0.13 -1.6 412,888 - HGI48_RS01855 0.13 -0.2 412,888 - HGI48_RS01855 0.13 -1.0 413,103 + HGI48_RS01855 0.42 -1.1 413,129 - HGI48_RS01855 0.45 -1.0 413,295 + HGI48_RS01855 0.67 +1.9 413,295 + HGI48_RS01855 0.67 +0.4 413,295 + HGI48_RS01855 0.67 +1.4 413,296 - HGI48_RS01855 0.67 -0.7 413,326 + -0.8 413,326 + HGI48_RS01855 0.71 -1.0 413,326 + -0.7 413,326 + HGI48_RS01855 0.71 -0.5 413,327 - -0.5 413,532 + +0.3 413,533 - -0.5 413,533 - -0.8 413,533 - -0.6 413,533 - -1.7 413,533 - -0.5 413,539 + -0.5 413,539 + -1.3 413,539 + -2.8 413,539 + -1.3 413,539 + -0.1 413,539 + +1.6 413,539 + -0.8 413,539 + -1.1 413,539 + +0.3 413,539 + -0.4 413,539 + -1.0 413,539 + +0.1 413,540 - +0.1 413,540 - +0.1 413,540 - -1.1 413,540 - -1.3 413,540 - -0.4 413,540 - -1.7 413,540 - +0.6 413,540 - -0.3 413,540 - +0.1 413,540 - -0.7 413,540 - +0.4 413,540 - -0.5 413,555 + -0.4 413,556 - +1.9 413,559 + -1.7 413,677 + HGI48_RS01860 0.14 +0.7 413,678 - HGI48_RS01860 0.14 +1.1 413,678 - HGI48_RS01860 0.14 -0.6 413,678 - HGI48_RS01860 0.14 +1.3 413,678 - HGI48_RS01860 0.14 -0.5 413,726 + HGI48_RS01860 0.19 -0.3 413,726 + HGI48_RS01860 0.19 +0.0 413,726 + HGI48_RS01860 0.19 -0.7 413,727 - HGI48_RS01860 0.20 +1.3 413,727 - HGI48_RS01860 0.20 -0.7 413,727 - HGI48_RS01860 0.20 +1.4 413,813 - HGI48_RS01860 0.30 -1.1 413,819 - HGI48_RS01860 0.31 -0.3 413,871 + HGI48_RS01860 0.37 +0.7 413,871 + HGI48_RS01860 0.37 -0.8 413,871 + HGI48_RS01860 0.37 +0.4 413,871 + HGI48_RS01860 0.37 -1.8 413,871 + HGI48_RS01860 0.37 -1.7 413,871 + HGI48_RS01860 0.37 +0.5 413,872 - HGI48_RS01860 0.37 -1.3 413,872 - +0.9 413,872 - HGI48_RS01860 0.37 +0.4 413,872 - HGI48_RS01860 0.37 +1.4 413,872 - HGI48_RS01860 0.37 -1.6 413,872 - HGI48_RS01860 0.37 +0.4 413,954 + HGI48_RS01860 0.47 +1.4 413,954 + HGI48_RS01860 0.47 -0.1 413,954 + HGI48_RS01860 0.47 -1.0 413,955 - HGI48_RS01860 0.47 +0.4 413,955 - HGI48_RS01860 0.47 -1.0 413,956 + HGI48_RS01860 0.47 -2.1 413,956 + HGI48_RS01860 0.47 +1.9 413,957 - HGI48_RS01860 0.47 +1.9 414,023 - HGI48_RS01860 0.55 +1.0 414,025 + HGI48_RS01860 0.56 -0.7 414,067 - HGI48_RS01860 0.61 -0.1 414,132 + HGI48_RS01860 0.68 +0.9 414,132 + HGI48_RS01860 0.68 +0.2 414,132 + HGI48_RS01860 0.68 +2.7 414,133 - HGI48_RS01860 0.69 +2.2 414,133 - HGI48_RS01860 0.69 +0.2 414,133 - HGI48_RS01860 0.69 -0.6 414,133 - HGI48_RS01860 0.69 -0.4 414,133 - HGI48_RS01860 0.69 +1.3 414,133 - HGI48_RS01860 0.69 -2.3 414,233 - -0.5 414,326 - -0.6 414,326 - +0.0 414,406 - +1.9 414,406 - -0.2 414,409 + +0.3 414,410 - -0.3 414,410 - -0.1 414,410 - +0.5 414,410 - -1.2 414,463 - -2.3 414,628 + HGI48_RS01865 0.26 +0.9 414,629 - HGI48_RS01865 0.26 +1.1 414,629 - HGI48_RS01865 0.26 +0.3 414,632 + +1.3 414,633 - HGI48_RS01865 0.26 +0.9 414,633 - HGI48_RS01865 0.26 -0.0 414,633 - HGI48_RS01865 0.26 +0.2 414,633 - HGI48_RS01865 0.26 +0.9 414,678 + +0.9 414,679 - HGI48_RS01865 0.31 -0.5 414,690 + HGI48_RS01865 0.32 +0.1 414,716 + HGI48_RS01865 0.35 +2.8 414,736 - HGI48_RS01865 0.37 -0.1 414,738 + HGI48_RS01865 0.38 -0.6 414,739 - HGI48_RS01865 0.38 +1.3 414,739 - HGI48_RS01865 0.38 -0.2 414,965 - HGI48_RS01865 0.62 -1.0 415,057 + +1.6 415,065 + HGI48_RS01865 0.73 +0.5 415,065 + HGI48_RS01865 0.73 +0.9 415,065 + +1.0 415,065 + HGI48_RS01865 0.73 +0.0 415,065 + HGI48_RS01865 0.73 -2.1 415,065 + HGI48_RS01865 0.73 +0.9 415,065 + HGI48_RS01865 0.73 -0.1 415,065 + HGI48_RS01865 0.73 +1.1 415,066 - +0.5 415,066 - HGI48_RS01865 0.73 -0.2 415,066 - HGI48_RS01865 0.73 -1.1 415,066 - HGI48_RS01865 0.73 -0.8 415,066 - HGI48_RS01865 0.73 -1.1 415,066 - HGI48_RS01865 0.73 -0.1 415,066 - HGI48_RS01865 0.73 -1.1 415,066 - HGI48_RS01865 0.73 +1.5 415,134 + HGI48_RS01865 0.80 +1.0 415,135 - HGI48_RS01865 0.80 +1.0 415,159 + HGI48_RS01865 0.83 -0.4 415,159 + HGI48_RS01865 0.83 +1.0 415,159 + HGI48_RS01865 0.83 -1.3 415,230 + -0.7 415,230 + +2.6 415,230 + -1.6 415,230 + -1.3 415,230 + -0.7 415,230 + -0.6 415,230 + -0.4 415,231 - +2.3 415,231 - -0.3 415,231 - -0.5 415,290 + -2.0 415,291 - -0.5 415,313 + -0.5 415,313 + -1.1 415,314 - +0.4
Or see this region's nucleotide sequence