Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00835 and HGI48_RS00840 are separated by 327 nucleotides HGI48_RS00840 and HGI48_RS00845 are separated by 6 nucleotides HGI48_RS00845 and HGI48_RS00850 are separated by 233 nucleotides
HGI48_RS00835: HGI48_RS00835 - tyrosine-protein phosphatase, at 190,497 to 191,279
_RS00835
HGI48_RS00840: HGI48_RS00840 - SocA family protein, at 191,607 to 192,131
_RS00840
HGI48_RS00845: HGI48_RS00845 - hypothetical protein, at 192,138 to 192,710
_RS00845
HGI48_RS00850: HGI48_RS00850 - phosphoenolpyruvate carboxylase, at 192,944 to 195,583
_RS00850
Position (kb) 191
192
193 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 190.753 kb on - strand, within HGI48_RS00835 at 190.850 kb on + strand, within HGI48_RS00835 at 190.850 kb on + strand, within HGI48_RS00835 at 190.851 kb on - strand, within HGI48_RS00835 at 190.851 kb on - strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.037 kb on + strand, within HGI48_RS00835 at 191.038 kb on - strand, within HGI48_RS00835 at 191.177 kb on + strand at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.177 kb on + strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.178 kb on - strand, within HGI48_RS00835 at 191.180 kb on + strand at 191.180 kb on + strand, within HGI48_RS00835 at 191.268 kb on + strand at 191.268 kb on + strand at 191.268 kb on + strand at 191.275 kb on + strand at 191.276 kb on - strand at 191.276 kb on - strand at 191.277 kb on + strand at 191.277 kb on + strand at 191.277 kb on + strand at 191.277 kb on + strand at 191.278 kb on - strand at 191.278 kb on - strand at 191.302 kb on + strand at 191.302 kb on + strand at 191.302 kb on + strand at 191.303 kb on - strand at 191.303 kb on - strand at 191.303 kb on - strand at 191.303 kb on - strand at 191.334 kb on + strand at 191.334 kb on + strand at 191.334 kb on + strand at 191.334 kb on + strand at 191.335 kb on - strand at 191.335 kb on - strand at 191.369 kb on + strand at 191.369 kb on + strand at 191.369 kb on + strand at 191.370 kb on - strand at 191.389 kb on + strand at 191.389 kb on + strand at 191.390 kb on - strand at 191.405 kb on + strand at 191.429 kb on + strand at 191.429 kb on + strand at 191.430 kb on - strand at 191.430 kb on - strand at 191.443 kb on - strand at 191.604 kb on - strand at 191.707 kb on - strand, within HGI48_RS00840 at 191.750 kb on - strand, within HGI48_RS00840 at 191.803 kb on - strand, within HGI48_RS00840 at 191.966 kb on - strand, within HGI48_RS00840 at 192.039 kb on - strand, within HGI48_RS00840 at 192.039 kb on - strand, within HGI48_RS00840 at 192.182 kb on - strand at 192.213 kb on - strand, within HGI48_RS00845 at 192.213 kb on - strand, within HGI48_RS00845 at 192.233 kb on + strand, within HGI48_RS00845 at 192.271 kb on - strand, within HGI48_RS00845 at 192.286 kb on + strand, within HGI48_RS00845 at 192.287 kb on - strand, within HGI48_RS00845 at 192.300 kb on - strand, within HGI48_RS00845 at 192.305 kb on + strand, within HGI48_RS00845 at 192.311 kb on - strand, within HGI48_RS00845 at 192.331 kb on + strand, within HGI48_RS00845 at 192.331 kb on + strand, within HGI48_RS00845 at 192.331 kb on + strand, within HGI48_RS00845 at 192.405 kb on - strand at 192.418 kb on - strand at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.418 kb on - strand, within HGI48_RS00845 at 192.433 kb on - strand, within HGI48_RS00845 at 192.495 kb on + strand, within HGI48_RS00845 at 192.506 kb on + strand, within HGI48_RS00845 at 192.514 kb on + strand, within HGI48_RS00845 at 192.530 kb on + strand, within HGI48_RS00845 at 192.572 kb on + strand, within HGI48_RS00845 at 192.616 kb on + strand, within HGI48_RS00845 at 192.713 kb on + strand at 192.729 kb on + strand at 192.729 kb on + strand at 192.738 kb on + strand at 192.739 kb on - strand at 192.861 kb on + strand at 192.862 kb on - strand at 192.862 kb on - strand at 192.863 kb on + strand at 192.863 kb on + strand at 192.863 kb on + strand at 192.864 kb on - strand at 192.864 kb on - strand at 192.864 kb on - strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.865 kb on + strand at 192.866 kb on - strand at 192.883 kb on - strand at 192.892 kb on + strand at 192.925 kb on - strand at 192.926 kb on + strand at 192.926 kb on + strand at 192.926 kb on + strand at 192.927 kb on - strand at 192.927 kb on - strand at 192.927 kb on - strand at 193.004 kb on + strand at 193.005 kb on - strand at 193.058 kb on + strand at 193.059 kb on - strand at 193.066 kb on + strand at 193.066 kb on + strand at 193.066 kb on + strand at 193.066 kb on + strand at 193.067 kb on - strand at 193.067 kb on - strand at 193.067 kb on - strand at 193.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 190,753 - HGI48_RS00835 0.33 -0.3 190,850 + HGI48_RS00835 0.45 -0.1 190,850 + HGI48_RS00835 0.45 -0.5 190,851 - HGI48_RS00835 0.45 -0.1 190,851 - HGI48_RS00835 0.45 -0.3 191,037 + HGI48_RS00835 0.69 +0.3 191,037 + HGI48_RS00835 0.69 -0.6 191,037 + HGI48_RS00835 0.69 -1.8 191,038 - HGI48_RS00835 0.69 +0.5 191,177 + -0.9 191,177 + HGI48_RS00835 0.87 +1.1 191,177 + HGI48_RS00835 0.87 +0.2 191,177 + HGI48_RS00835 0.87 +0.3 191,177 + HGI48_RS00835 0.87 -1.7 191,177 + HGI48_RS00835 0.87 -1.6 191,177 + HGI48_RS00835 0.87 -1.4 191,177 + HGI48_RS00835 0.87 +0.7 191,178 - HGI48_RS00835 0.87 -1.3 191,178 - HGI48_RS00835 0.87 -0.4 191,178 - HGI48_RS00835 0.87 -1.1 191,180 + -1.3 191,180 + HGI48_RS00835 0.87 -2.1 191,268 + +0.5 191,268 + +0.7 191,268 + +1.1 191,275 + -0.6 191,276 - +1.1 191,276 - -0.9 191,277 + -1.4 191,277 + +0.3 191,277 + +1.1 191,277 + -1.4 191,278 - -0.9 191,278 - -1.1 191,302 + -1.8 191,302 + +0.0 191,302 + -0.7 191,303 - -0.7 191,303 - -0.9 191,303 - +0.6 191,303 - -0.7 191,334 + +0.9 191,334 + +2.2 191,334 + -0.9 191,334 + -0.1 191,335 - -0.8 191,335 - +0.9 191,369 + -0.9 191,369 + -0.4 191,369 + +0.6 191,370 - -1.1 191,389 + +0.6 191,389 + -1.0 191,390 - -1.3 191,405 + +0.3 191,429 + -0.4 191,429 + -2.3 191,430 - -1.1 191,430 - -0.9 191,443 - -0.4 191,604 - +0.1 191,707 - HGI48_RS00840 0.19 +1.7 191,750 - HGI48_RS00840 0.27 +0.3 191,803 - HGI48_RS00840 0.37 -1.5 191,966 - HGI48_RS00840 0.68 +0.7 192,039 - HGI48_RS00840 0.82 -0.8 192,039 - HGI48_RS00840 0.82 -0.4 192,182 - +0.7 192,213 - HGI48_RS00845 0.13 +1.3 192,213 - HGI48_RS00845 0.13 +0.6 192,233 + HGI48_RS00845 0.17 +0.1 192,271 - HGI48_RS00845 0.23 +1.9 192,286 + HGI48_RS00845 0.26 -0.8 192,287 - HGI48_RS00845 0.26 -0.9 192,300 - HGI48_RS00845 0.28 -1.6 192,305 + HGI48_RS00845 0.29 -2.7 192,311 - HGI48_RS00845 0.30 +0.9 192,331 + HGI48_RS00845 0.34 +0.4 192,331 + HGI48_RS00845 0.34 -0.4 192,331 + HGI48_RS00845 0.34 +1.9 192,405 - -0.9 192,418 - +0.5 192,418 - HGI48_RS00845 0.49 -0.6 192,418 - HGI48_RS00845 0.49 -0.7 192,418 - HGI48_RS00845 0.49 +0.3 192,418 - HGI48_RS00845 0.49 +0.9 192,418 - HGI48_RS00845 0.49 +0.7 192,433 - HGI48_RS00845 0.51 -0.3 192,495 + HGI48_RS00845 0.62 -1.1 192,506 + HGI48_RS00845 0.64 -0.1 192,514 + HGI48_RS00845 0.66 +0.7 192,530 + HGI48_RS00845 0.68 +0.1 192,572 + HGI48_RS00845 0.76 -3.0 192,616 + HGI48_RS00845 0.83 +1.1 192,713 + +0.3 192,729 + +2.8 192,729 + +0.6 192,738 + +0.3 192,739 - -2.1 192,861 + +1.4 192,862 - -0.9 192,862 - +1.6 192,863 + -0.2 192,863 + +0.1 192,863 + +0.1 192,864 - +0.2 192,864 - -0.8 192,864 - -0.5 192,865 + +0.7 192,865 + -0.4 192,865 + -1.4 192,865 + -0.9 192,866 - +0.3 192,883 - -1.3 192,892 + +1.1 192,925 - -1.3 192,926 + -0.7 192,926 + +2.2 192,926 + -1.9 192,927 - -0.4 192,927 - -3.2 192,927 - -0.4 193,004 + +0.3 193,005 - -2.5 193,058 + -1.6 193,059 - -0.1 193,066 + +0.9 193,066 + +0.5 193,066 + -0.1 193,066 + -1.8 193,067 - -0.9 193,067 - -0.7 193,067 - -1.4 193,081 - -5.0
Or see this region's nucleotide sequence