Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16090

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,614,070	+		HGI48_RS16080	0.67	-0.9
3,614,071	-		HGI48_RS16080	0.68	-1.0
3,614,071	-		HGI48_RS16080	0.68	-2.5
3,614,080	+		HGI48_RS16080	0.70	-1.2
3,614,080	+		HGI48_RS16080	0.70	-1.4
3,614,080	+		HGI48_RS16080	0.70	-3.7
3,614,081	-		HGI48_RS16080	0.70	+0.5
3,614,081	-		HGI48_RS16080	0.70	-2.7
3,614,081	-		HGI48_RS16080	0.70	-0.9
3,614,081	-		HGI48_RS16080	0.70	+1.1
3,614,081	-		HGI48_RS16080	0.70	-1.9
3,614,081	-		HGI48_RS16080	0.70	-2.4
3,614,081	-		HGI48_RS16080	0.70	-1.9
3,614,081	-		HGI48_RS16080	0.70	-1.1
3,614,081	-				-1.2
3,614,081	-		HGI48_RS16080	0.70	-1.5
3,614,081	-		HGI48_RS16080	0.70	-2.7
3,614,081	-				+0.6
3,614,132	-		HGI48_RS16080	0.84	-3.4
3,614,148	+		HGI48_RS16080	0.88	-0.8
3,614,148	+		HGI48_RS16080	0.88	-1.9
3,614,148	+		HGI48_RS16080	0.88	-1.7
3,614,148	+		HGI48_RS16080	0.88	-0.2
3,614,148	+		HGI48_RS16080	0.88	-1.7
3,614,149	-				-1.2
3,614,149	-		HGI48_RS16080	0.88	+0.2
3,614,149	-				-2.1
3,614,149	-		HGI48_RS16080	0.88	+0.3
3,614,149	-		HGI48_RS16080	0.88	-2.6
3,614,149	-		HGI48_RS16080	0.88	-0.9
3,614,149	-		HGI48_RS16080	0.88	-1.7
3,614,311	+				+1.1
3,614,312	-				-1.7
3,614,324	+				-0.9
3,614,325	-				+0.3
3,614,400	-		HGI48_RS16085	0.18	-0.7
3,614,405	+				+0.9
3,614,405	+		HGI48_RS16085	0.19	+1.4
3,614,405	+				-0.7
3,614,406	-				-0.1
3,614,406	-		HGI48_RS16085	0.19	+1.5
3,614,406	-		HGI48_RS16085	0.19	-0.0
3,614,407	+		HGI48_RS16085	0.19	+0.2
3,614,407	+		HGI48_RS16085	0.19	+0.1
3,614,408	-		HGI48_RS16085	0.19	-3.0
3,614,408	-		HGI48_RS16085	0.19	-0.5
3,614,408	-		HGI48_RS16085	0.19	-0.5
3,614,408	-		HGI48_RS16085	0.19	-0.7
3,614,408	-		HGI48_RS16085	0.19	-1.2
3,614,408	-		HGI48_RS16085	0.19	-0.8
3,614,408	-		HGI48_RS16085	0.19	+0.4
3,614,467	+		HGI48_RS16085	0.27	+2.1
3,614,468	-				+0.1
3,614,485	+		HGI48_RS16085	0.29	+1.8
3,614,485	+		HGI48_RS16085	0.29	+1.7
3,614,485	+		HGI48_RS16085	0.29	-0.9
3,614,485	+		HGI48_RS16085	0.29	-0.5
3,614,547	+		HGI48_RS16085	0.37	-0.3
3,614,681	+		HGI48_RS16085	0.54	+2.7
3,614,720	+		HGI48_RS16085	0.59	+0.5
3,614,720	+		HGI48_RS16085	0.59	+0.7
3,614,721	-		HGI48_RS16085	0.60	-2.2
3,614,721	-		HGI48_RS16085	0.60	-0.5
3,614,721	-		HGI48_RS16085	0.60	-0.0
3,614,721	-		HGI48_RS16085	0.60	+0.3
3,614,807	-		HGI48_RS16085	0.71	-1.7
3,614,807	-		HGI48_RS16085	0.71	-2.5
3,614,860	+				+0.1
3,614,860	+		HGI48_RS16085	0.78	+1.3
3,614,860	+				+0.4
3,614,860	+		HGI48_RS16085	0.78	-0.9
3,614,860	+		HGI48_RS16085	0.78	+2.6
3,614,860	+		HGI48_RS16085	0.78	+0.2
3,614,860	+		HGI48_RS16085	0.78	-2.1
3,614,861	-		HGI48_RS16085	0.78	-1.6
3,614,861	-		HGI48_RS16085	0.78	-0.9
3,614,861	-		HGI48_RS16085	0.78	-0.9
3,614,861	-		HGI48_RS16085	0.78	-0.6
3,614,861	-		HGI48_RS16085	0.78	-0.9
3,614,861	-		HGI48_RS16085	0.78	-1.4
3,614,864	+		HGI48_RS16085	0.78	-0.2
3,614,865	-		HGI48_RS16085	0.78	-2.2
3,614,933	+		HGI48_RS16085	0.87	-1.4
3,615,000	-				-1.5
3,615,019	+				-0.4
3,615,019	+				+0.1
3,615,019	+				+1.0
3,615,020	-				-1.2
3,615,020	-				-2.5
3,615,020	-				+0.5
3,615,022	-				-2.4
3,615,022	-				-1.9
3,615,022	-				-0.8
3,615,050	-				-0.3
3,615,184	+		HGI48_RS16090	0.17	+0.5
3,615,184	+		HGI48_RS16090	0.17	+2.1
3,615,184	+		HGI48_RS16090	0.17	-3.2
3,615,184	+		HGI48_RS16090	0.17	+1.1
3,615,191	-		HGI48_RS16090	0.18	-0.0
3,615,211	-				-1.5
3,615,340	+		HGI48_RS16090	0.34	-0.9
3,615,341	-		HGI48_RS16090	0.34	+1.4
3,615,369	+		HGI48_RS16090	0.37	+0.7
3,615,370	-		HGI48_RS16090	0.37	+0.5
3,615,575	+		HGI48_RS16090	0.59	+1.4
3,615,575	+		HGI48_RS16090	0.59	-0.7
3,615,595	-		HGI48_RS16090	0.61	-1.1
3,615,640	-				-1.1
3,615,853	-				-0.9
3,615,853	-		HGI48_RS16090	0.89	-0.9
3,615,853	-		HGI48_RS16090	0.89	-1.2
3,615,853	-		HGI48_RS16090	0.89	-1.7
3,615,945	+				-0.0
3,615,945	+				-0.0
3,615,945	+				+0.3
3,615,945	+				+0.7
3,615,945	+				-0.5
3,615,945	+				-0.5
3,615,945	+				+0.5
3,615,945	+				+1.7
3,615,945	+				+1.7
3,615,945	+				-2.1
3,615,945	+				+0.3
3,615,945	+				-1.5
3,615,945	+				+0.9
3,615,945	+				+0.4
3,615,945	+				+0.2
3,615,945	+				+0.1
3,615,945	+				-1.3
3,615,945	+				+3.8
3,615,945	+				+0.1
3,615,946	-				-2.1
3,615,946	-				-2.5
3,615,946	-				-2.1
3,615,946	-				-0.9
3,615,946	-				-1.7
3,615,946	-				+0.1
3,615,946	-				-0.4
3,615,946	-				-2.1
3,615,953	-				-0.3
3,615,953	-				-1.4
3,615,970	-				-0.6
3,615,970	-				+0.1
3,616,032	+				-1.7
3,616,034	+				-1.7
3,616,034	+				-0.1
3,616,037	+				-1.5
3,616,037	+				-1.0
3,616,061	+				-2.4
3,616,072	+				-1.7
3,616,718	+				-1.5
3,616,719	-				-0.9
3,616,765	+				-1.7
3,616,817	-		HGI48_RS16100	0.10	-1.2
3,616,872	+		HGI48_RS16100	0.20	+0.7
3,616,916	+		HGI48_RS16100	0.29	-0.3
3,616,917	-		HGI48_RS16100	0.29	-2.0
3,616,917	-		HGI48_RS16100	0.29	-0.5
3,616,917	-		HGI48_RS16100	0.29	-0.3
3,616,922	+		HGI48_RS16100	0.30	+1.1
3,616,922	+		HGI48_RS16100	0.30	+1.6
3,616,923	-		HGI48_RS16100	0.30	-1.2
3,616,923	-		HGI48_RS16100	0.30	-1.4