Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03790

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03785 and HGI48_RS03790 are separated by 115 nucleotidesHGI48_RS03790 and HGI48_RS03795 are separated by 145 nucleotides HGI48_RS03785: HGI48_RS03785 - nucleoside recognition family protein, at 807,821 to 808,753 _RS03785 HGI48_RS03790: HGI48_RS03790 - helix-turn-helix domain-containing protein, at 808,869 to 809,903 _RS03790 HGI48_RS03795: HGI48_RS03795 - 4Fe-4S binding protein, at 810,049 to 810,918 _RS03795 Position (kb) 808 809 810Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 807.878 kb on + strandat 807.878 kb on + strandat 807.878 kb on + strandat 807.879 kb on - strandat 807.879 kb on - strandat 807.879 kb on - strandat 807.879 kb on - strandat 807.879 kb on - strandat 807.880 kb on + strandat 807.880 kb on + strandat 807.880 kb on + strandat 807.881 kb on - strandat 807.881 kb on - strandat 807.881 kb on - strandat 807.881 kb on - strandat 807.881 kb on - strandat 807.881 kb on - strandat 807.896 kb on - strandat 808.146 kb on + strand, within HGI48_RS03785at 808.146 kb on + strand, within HGI48_RS03785at 808.146 kb on + strand, within HGI48_RS03785at 808.146 kb on + strand, within HGI48_RS03785at 808.146 kb on + strand, within HGI48_RS03785at 808.146 kb on + strand, within HGI48_RS03785at 808.146 kb on + strand, within HGI48_RS03785at 808.147 kb on - strand, within HGI48_RS03785at 808.147 kb on - strand, within HGI48_RS03785at 808.151 kb on + strand, within HGI48_RS03785at 808.196 kb on - strand, within HGI48_RS03785at 808.235 kb on + strand, within HGI48_RS03785at 808.235 kb on + strand, within HGI48_RS03785at 808.235 kb on + strand, within HGI48_RS03785at 808.235 kb on + strand, within HGI48_RS03785at 808.235 kb on + strand, within HGI48_RS03785at 808.235 kb on + strand, within HGI48_RS03785at 808.236 kb on - strand, within HGI48_RS03785at 808.236 kb on - strand, within HGI48_RS03785at 808.236 kb on - strand, within HGI48_RS03785at 808.236 kb on - strand, within HGI48_RS03785at 808.236 kb on - strand, within HGI48_RS03785at 808.253 kb on - strand, within HGI48_RS03785at 808.257 kb on + strand, within HGI48_RS03785at 808.333 kb on + strand, within HGI48_RS03785at 808.334 kb on - strand, within HGI48_RS03785at 808.334 kb on - strand, within HGI48_RS03785at 808.337 kb on - strand, within HGI48_RS03785at 808.337 kb on - strandat 808.396 kb on + strand, within HGI48_RS03785at 808.396 kb on + strand, within HGI48_RS03785at 808.396 kb on + strand, within HGI48_RS03785at 808.560 kb on + strandat 808.561 kb on - strand, within HGI48_RS03785at 808.561 kb on - strandat 808.617 kb on + strand, within HGI48_RS03785at 808.751 kb on + strandat 808.751 kb on + strandat 808.765 kb on + strandat 808.765 kb on + strandat 808.765 kb on + strandat 808.766 kb on - strandat 808.766 kb on - strandat 808.766 kb on - strandat 808.768 kb on + strandat 808.768 kb on + strandat 808.769 kb on - strandat 808.817 kb on + strandat 808.817 kb on + strandat 808.818 kb on - strandat 808.824 kb on + strandat 808.825 kb on - strandat 808.865 kb on + strandat 808.865 kb on + strandat 808.865 kb on + strandat 808.865 kb on + strandat 808.865 kb on + strandat 808.865 kb on + strandat 808.899 kb on - strandat 808.957 kb on + strandat 809.024 kb on + strand, within HGI48_RS03790at 809.024 kb on + strand, within HGI48_RS03790at 809.024 kb on + strand, within HGI48_RS03790at 809.024 kb on + strand, within HGI48_RS03790at 809.025 kb on - strandat 809.025 kb on - strand, within HGI48_RS03790at 809.025 kb on - strand, within HGI48_RS03790at 809.025 kb on - strand, within HGI48_RS03790at 809.025 kb on - strand, within HGI48_RS03790at 809.025 kb on - strand, within HGI48_RS03790at 809.025 kb on - strand, within HGI48_RS03790at 809.025 kb on - strand, within HGI48_RS03790at 809.051 kb on - strand, within HGI48_RS03790at 809.051 kb on - strand, within HGI48_RS03790at 809.051 kb on - strand, within HGI48_RS03790at 809.051 kb on - strand, within HGI48_RS03790at 809.051 kb on - strand, within HGI48_RS03790at 809.051 kb on - strandat 809.051 kb on - strand, within HGI48_RS03790at 809.109 kb on + strand, within HGI48_RS03790at 809.109 kb on + strand, within HGI48_RS03790at 809.109 kb on + strand, within HGI48_RS03790at 809.109 kb on + strand, within HGI48_RS03790at 809.109 kb on + strandat 809.109 kb on + strand, within HGI48_RS03790at 809.109 kb on + strand, within HGI48_RS03790at 809.110 kb on - strand, within HGI48_RS03790at 809.110 kb on - strand, within HGI48_RS03790at 809.122 kb on + strand, within HGI48_RS03790at 809.122 kb on + strand, within HGI48_RS03790at 809.155 kb on + strand, within HGI48_RS03790at 809.155 kb on + strand, within HGI48_RS03790at 809.201 kb on + strandat 809.201 kb on + strand, within HGI48_RS03790at 809.201 kb on + strand, within HGI48_RS03790at 809.201 kb on + strand, within HGI48_RS03790at 809.201 kb on + strand, within HGI48_RS03790at 809.201 kb on + strand, within HGI48_RS03790at 809.202 kb on - strand, within HGI48_RS03790at 809.202 kb on - strand, within HGI48_RS03790at 809.202 kb on - strand, within HGI48_RS03790at 809.221 kb on + strand, within HGI48_RS03790at 809.221 kb on + strand, within HGI48_RS03790at 809.222 kb on - strand, within HGI48_RS03790at 809.222 kb on - strand, within HGI48_RS03790at 809.273 kb on - strand, within HGI48_RS03790at 809.275 kb on + strand, within HGI48_RS03790at 809.387 kb on + strand, within HGI48_RS03790at 809.387 kb on + strand, within HGI48_RS03790at 809.388 kb on - strandat 809.388 kb on - strandat 809.388 kb on - strandat 809.388 kb on - strand, within HGI48_RS03790at 809.517 kb on + strand, within HGI48_RS03790at 809.517 kb on + strand, within HGI48_RS03790at 809.517 kb on + strand, within HGI48_RS03790at 809.517 kb on + strand, within HGI48_RS03790at 809.517 kb on + strand, within HGI48_RS03790at 809.518 kb on - strand, within HGI48_RS03790at 809.518 kb on - strand, within HGI48_RS03790at 809.518 kb on - strand, within HGI48_RS03790at 809.535 kb on - strand, within HGI48_RS03790at 809.535 kb on - strand, within HGI48_RS03790at 809.535 kb on - strandat 809.540 kb on + strand, within HGI48_RS03790at 809.540 kb on + strand, within HGI48_RS03790at 809.558 kb on - strand, within HGI48_RS03790at 809.754 kb on - strand, within HGI48_RS03790at 809.778 kb on + strand, within HGI48_RS03790at 809.778 kb on + strand, within HGI48_RS03790at 809.779 kb on - strand, within HGI48_RS03790at 809.779 kb on - strand, within HGI48_RS03790at 809.810 kb on + strandat 809.811 kb on - strandat 809.841 kb on + strandat 809.841 kb on + strandat 809.842 kb on - strandat 810.018 kb on + strandat 810.019 kb on - strandat 810.034 kb on + strandat 810.035 kb on - strandat 810.050 kb on + strandat 810.050 kb on + strandat 810.051 kb on - strandat 810.125 kb on - strandat 810.156 kb on - strand, within HGI48_RS03795at 810.173 kb on - strand, within HGI48_RS03795at 810.369 kb on + strandat 810.369 kb on + strand, within HGI48_RS03795at 810.370 kb on - strand, within HGI48_RS03795at 810.651 kb on + strand, within HGI48_RS03795at 810.745 kb on - strand, within HGI48_RS03795at 810.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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807,878 + +0.3
807,878 + -1.4
807,878 + +1.0
807,879 - +2.9
807,879 - -0.2
807,879 - -0.4
807,879 - -1.1
807,879 - -1.1
807,880 + +0.9
807,880 + -0.5
807,880 + +0.0
807,881 - +0.5
807,881 - -0.3
807,881 - -1.8
807,881 - -0.7
807,881 - -1.4
807,881 - -0.3
807,896 - +0.5
808,146 + HGI48_RS03785 0.35 -0.8
808,146 + HGI48_RS03785 0.35 -0.6
808,146 + HGI48_RS03785 0.35 +0.7
808,146 + HGI48_RS03785 0.35 -3.1
808,146 + HGI48_RS03785 0.35 +0.3
808,146 + HGI48_RS03785 0.35 -0.6
808,146 + HGI48_RS03785 0.35 -0.7
808,147 - HGI48_RS03785 0.35 -0.2
808,147 - HGI48_RS03785 0.35 -0.6
808,151 + HGI48_RS03785 0.35 +0.2
808,196 - HGI48_RS03785 0.40 -0.4
808,235 + HGI48_RS03785 0.44 +1.2
808,235 + HGI48_RS03785 0.44 -1.1
808,235 + HGI48_RS03785 0.44 -0.9
808,235 + HGI48_RS03785 0.44 +1.1
808,235 + HGI48_RS03785 0.44 -0.6
808,235 + HGI48_RS03785 0.44 -0.5
808,236 - HGI48_RS03785 0.44 -1.4
808,236 - HGI48_RS03785 0.44 -0.5
808,236 - HGI48_RS03785 0.44 +0.4
808,236 - HGI48_RS03785 0.44 -1.0
808,236 - HGI48_RS03785 0.44 -0.9
808,253 - HGI48_RS03785 0.46 -1.6
808,257 + HGI48_RS03785 0.47 -1.8
808,333 + HGI48_RS03785 0.55 -0.6
808,334 - HGI48_RS03785 0.55 -0.2
808,334 - HGI48_RS03785 0.55 +0.4
808,337 - HGI48_RS03785 0.55 -2.3
808,337 - -1.1
808,396 + HGI48_RS03785 0.62 +0.3
808,396 + HGI48_RS03785 0.62 -0.3
808,396 + HGI48_RS03785 0.62 +0.1
808,560 + -1.6
808,561 - HGI48_RS03785 0.79 -1.3
808,561 - -0.8
808,617 + HGI48_RS03785 0.85 -0.3
808,751 + -1.4
808,751 + +0.6
808,765 + +0.0
808,765 + -2.3
808,765 + -1.1
808,766 - -1.2
808,766 - +1.0
808,766 - +0.9
808,768 + -0.5
808,768 + +0.4
808,769 - -0.7
808,817 + +0.5
808,817 + +1.1
808,818 - -1.8
808,824 + -0.0
808,825 - +0.8
808,865 + +0.4
808,865 + -0.2
808,865 + -0.9
808,865 + -0.6
808,865 + -1.8
808,865 + -0.5
808,899 - -1.1
808,957 + -1.1
809,024 + HGI48_RS03790 0.15 -0.8
809,024 + HGI48_RS03790 0.15 -0.2
809,024 + HGI48_RS03790 0.15 -0.9
809,024 + HGI48_RS03790 0.15 -1.6
809,025 - -2.4
809,025 - HGI48_RS03790 0.15 -0.8
809,025 - HGI48_RS03790 0.15 -0.1
809,025 - HGI48_RS03790 0.15 -0.1
809,025 - HGI48_RS03790 0.15 -0.6
809,025 - HGI48_RS03790 0.15 -0.0
809,025 - HGI48_RS03790 0.15 +1.2
809,025 - HGI48_RS03790 0.15 +1.8
809,051 - HGI48_RS03790 0.18 +0.5
809,051 - HGI48_RS03790 0.18 -2.2
809,051 - HGI48_RS03790 0.18 +0.1
809,051 - HGI48_RS03790 0.18 -0.2
809,051 - HGI48_RS03790 0.18 +0.5
809,051 - -0.4
809,051 - HGI48_RS03790 0.18 -2.4
809,109 + HGI48_RS03790 0.23 -1.4
809,109 + HGI48_RS03790 0.23 -0.8
809,109 + HGI48_RS03790 0.23 +0.6
809,109 + HGI48_RS03790 0.23 +0.4
809,109 + -0.4
809,109 + HGI48_RS03790 0.23 -2.3
809,109 + HGI48_RS03790 0.23 -0.6
809,110 - HGI48_RS03790 0.23 -0.1
809,110 - HGI48_RS03790 0.23 +0.2
809,122 + HGI48_RS03790 0.24 -1.1
809,122 + HGI48_RS03790 0.24 -1.4
809,155 + HGI48_RS03790 0.28 -0.0
809,155 + HGI48_RS03790 0.28 -1.4
809,201 + -2.3
809,201 + HGI48_RS03790 0.32 -0.7
809,201 + HGI48_RS03790 0.32 +0.6
809,201 + HGI48_RS03790 0.32 -0.9
809,201 + HGI48_RS03790 0.32 +0.5
809,201 + HGI48_RS03790 0.32 -2.1
809,202 - HGI48_RS03790 0.32 +0.0
809,202 - HGI48_RS03790 0.32 -0.4
809,202 - HGI48_RS03790 0.32 +0.6
809,221 + HGI48_RS03790 0.34 -0.6
809,221 + HGI48_RS03790 0.34 -0.4
809,222 - HGI48_RS03790 0.34 -0.3
809,222 - HGI48_RS03790 0.34 -2.0
809,273 - HGI48_RS03790 0.39 +1.2
809,275 + HGI48_RS03790 0.39 +0.0
809,387 + HGI48_RS03790 0.50 +0.6
809,387 + HGI48_RS03790 0.50 +0.3
809,388 - -0.4
809,388 - -2.3
809,388 - +0.9
809,388 - HGI48_RS03790 0.50 -0.2
809,517 + HGI48_RS03790 0.63 -2.1
809,517 + HGI48_RS03790 0.63 -1.9
809,517 + HGI48_RS03790 0.63 -0.6
809,517 + HGI48_RS03790 0.63 +0.4
809,517 + HGI48_RS03790 0.63 +0.0
809,518 - HGI48_RS03790 0.63 -0.1
809,518 - HGI48_RS03790 0.63 +0.6
809,518 - HGI48_RS03790 0.63 -0.2
809,535 - HGI48_RS03790 0.64 +0.4
809,535 - HGI48_RS03790 0.64 -0.6
809,535 - -0.4
809,540 + HGI48_RS03790 0.65 +0.1
809,540 + HGI48_RS03790 0.65 -0.7
809,558 - HGI48_RS03790 0.67 -1.4
809,754 - HGI48_RS03790 0.86 -0.3
809,778 + HGI48_RS03790 0.88 -1.7
809,778 + HGI48_RS03790 0.88 -0.3
809,779 - HGI48_RS03790 0.88 +1.2
809,779 - HGI48_RS03790 0.88 +1.2
809,810 + +1.9
809,811 - -0.1
809,841 + -0.1
809,841 + +1.2
809,842 - +0.1
810,018 + -0.8
810,019 - -0.2
810,034 + +0.4
810,035 - -0.3
810,050 + -0.5
810,050 + -2.0
810,051 - -1.5
810,125 - -1.5
810,156 - HGI48_RS03795 0.12 -0.4
810,173 - HGI48_RS03795 0.14 +1.0
810,369 + -0.1
810,369 + HGI48_RS03795 0.37 -2.1
810,370 - HGI48_RS03795 0.37 -0.3
810,651 + HGI48_RS03795 0.69 -1.4
810,745 - HGI48_RS03795 0.80 -0.1
810,835 + +0.9

Or see this region's nucleotide sequence