Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03750

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03745 and HGI48_RS03750 are separated by 56 nucleotidesHGI48_RS03750 and HGI48_RS03755 are separated by 16 nucleotides HGI48_RS03745: HGI48_RS03745 - substrate-binding domain-containing protein, at 797,480 to 798,418 _RS03745 HGI48_RS03750: HGI48_RS03750 - sugar ABC transporter ATP-binding protein, at 798,475 to 800,022 _RS03750 HGI48_RS03755: HGI48_RS03755 - ABC transporter permease, at 800,039 to 801,073 _RS03755 Position (kb) 798 799 800 801Strain fitness (log2 ratio) -2 -1 0 1 2at 797.570 kb on - strandat 797.612 kb on - strand, within HGI48_RS03745at 797.864 kb on + strand, within HGI48_RS03745at 797.864 kb on + strand, within HGI48_RS03745at 797.864 kb on + strandat 797.864 kb on + strand, within HGI48_RS03745at 797.865 kb on - strand, within HGI48_RS03745at 797.865 kb on - strand, within HGI48_RS03745at 797.865 kb on - strand, within HGI48_RS03745at 797.865 kb on - strand, within HGI48_RS03745at 797.865 kb on - strand, within HGI48_RS03745at 797.865 kb on - strand, within HGI48_RS03745at 797.972 kb on - strand, within HGI48_RS03745at 797.972 kb on - strand, within HGI48_RS03745at 797.972 kb on - strand, within HGI48_RS03745at 797.972 kb on - strand, within HGI48_RS03745at 798.014 kb on + strand, within HGI48_RS03745at 798.014 kb on + strandat 798.015 kb on - strand, within HGI48_RS03745at 798.015 kb on - strand, within HGI48_RS03745at 798.015 kb on - strand, within HGI48_RS03745at 798.015 kb on - strand, within HGI48_RS03745at 798.316 kb on + strand, within HGI48_RS03745at 798.317 kb on - strand, within HGI48_RS03745at 798.317 kb on - strand, within HGI48_RS03745at 798.317 kb on - strand, within HGI48_RS03745at 798.416 kb on + strandat 798.416 kb on + strandat 798.417 kb on - strandat 798.417 kb on - strandat 798.496 kb on - strandat 798.759 kb on + strand, within HGI48_RS03750at 798.862 kb on + strand, within HGI48_RS03750at 798.862 kb on + strand, within HGI48_RS03750at 798.863 kb on - strand, within HGI48_RS03750at 798.878 kb on + strand, within HGI48_RS03750at 798.878 kb on + strand, within HGI48_RS03750at 798.878 kb on + strand, within HGI48_RS03750at 798.878 kb on + strandat 798.878 kb on + strand, within HGI48_RS03750at 798.879 kb on - strand, within HGI48_RS03750at 798.879 kb on - strand, within HGI48_RS03750at 798.879 kb on - strand, within HGI48_RS03750at 798.879 kb on - strand, within HGI48_RS03750at 798.879 kb on - strand, within HGI48_RS03750at 798.879 kb on - strand, within HGI48_RS03750at 799.066 kb on + strand, within HGI48_RS03750at 799.066 kb on + strand, within HGI48_RS03750at 799.066 kb on + strand, within HGI48_RS03750at 799.066 kb on + strand, within HGI48_RS03750at 799.066 kb on + strand, within HGI48_RS03750at 799.066 kb on + strand, within HGI48_RS03750at 799.067 kb on - strand, within HGI48_RS03750at 799.067 kb on - strand, within HGI48_RS03750at 799.429 kb on - strand, within HGI48_RS03750at 799.606 kb on + strand, within HGI48_RS03750at 799.865 kb on + strand, within HGI48_RS03750at 799.865 kb on + strand, within HGI48_RS03750at 799.865 kb on + strand, within HGI48_RS03750at 799.866 kb on - strand, within HGI48_RS03750at 799.866 kb on - strand, within HGI48_RS03750at 800.180 kb on - strand, within HGI48_RS03755at 800.180 kb on - strand, within HGI48_RS03755at 800.227 kb on + strand, within HGI48_RS03755at 800.227 kb on + strand, within HGI48_RS03755at 800.227 kb on + strandat 800.227 kb on + strand, within HGI48_RS03755at 800.227 kb on + strand, within HGI48_RS03755at 800.228 kb on - strand, within HGI48_RS03755at 800.228 kb on - strand, within HGI48_RS03755at 800.228 kb on - strand, within HGI48_RS03755at 800.228 kb on - strand, within HGI48_RS03755at 800.232 kb on - strand, within HGI48_RS03755at 800.330 kb on + strand, within HGI48_RS03755at 800.330 kb on + strand, within HGI48_RS03755at 800.331 kb on - strand, within HGI48_RS03755at 800.331 kb on - strand, within HGI48_RS03755at 800.331 kb on - strand, within HGI48_RS03755at 800.331 kb on - strand, within HGI48_RS03755at 800.331 kb on - strand, within HGI48_RS03755at 800.615 kb on - strandat 800.644 kb on - strandat 800.663 kb on - strandat 800.759 kb on + strand, within HGI48_RS03755at 800.759 kb on + strand, within HGI48_RS03755at 800.759 kb on + strand, within HGI48_RS03755at 800.759 kb on + strand, within HGI48_RS03755at 800.759 kb on + strand, within HGI48_RS03755at 800.759 kb on + strand, within HGI48_RS03755at 800.759 kb on + strand, within HGI48_RS03755at 800.759 kb on + strand, within HGI48_RS03755at 800.760 kb on - strand, within HGI48_RS03755at 800.760 kb on - strand, within HGI48_RS03755at 800.760 kb on - strand, within HGI48_RS03755at 800.760 kb on - strand, within HGI48_RS03755at 800.760 kb on - strand, within HGI48_RS03755at 800.991 kb on - strandat 800.991 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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797,570 - +0.9
797,612 - HGI48_RS03745 0.14 +2.6
797,864 + HGI48_RS03745 0.41 -0.9
797,864 + HGI48_RS03745 0.41 -0.4
797,864 + -1.4
797,864 + HGI48_RS03745 0.41 -1.8
797,865 - HGI48_RS03745 0.41 -0.1
797,865 - HGI48_RS03745 0.41 -0.5
797,865 - HGI48_RS03745 0.41 -1.1
797,865 - HGI48_RS03745 0.41 +1.0
797,865 - HGI48_RS03745 0.41 -0.7
797,865 - HGI48_RS03745 0.41 -0.3
797,972 - HGI48_RS03745 0.52 -1.8
797,972 - HGI48_RS03745 0.52 -1.1
797,972 - HGI48_RS03745 0.52 +0.2
797,972 - HGI48_RS03745 0.52 +0.2
798,014 + HGI48_RS03745 0.57 -1.4
798,014 + +0.6
798,015 - HGI48_RS03745 0.57 -1.4
798,015 - HGI48_RS03745 0.57 +0.6
798,015 - HGI48_RS03745 0.57 -0.6
798,015 - HGI48_RS03745 0.57 +1.4
798,316 + HGI48_RS03745 0.89 +0.0
798,317 - HGI48_RS03745 0.89 +0.0
798,317 - HGI48_RS03745 0.89 +0.3
798,317 - HGI48_RS03745 0.89 -1.6
798,416 + +0.2
798,416 + +1.0
798,417 - -1.6
798,417 - +0.0
798,496 - -0.0
798,759 + HGI48_RS03750 0.18 +2.0
798,862 + HGI48_RS03750 0.25 -0.0
798,862 + HGI48_RS03750 0.25 +0.2
798,863 - HGI48_RS03750 0.25 -0.6
798,878 + HGI48_RS03750 0.26 +0.7
798,878 + HGI48_RS03750 0.26 -0.4
798,878 + HGI48_RS03750 0.26 +0.5
798,878 + +0.2
798,878 + HGI48_RS03750 0.26 -0.6
798,879 - HGI48_RS03750 0.26 +1.2
798,879 - HGI48_RS03750 0.26 +1.6
798,879 - HGI48_RS03750 0.26 -1.2
798,879 - HGI48_RS03750 0.26 +0.3
798,879 - HGI48_RS03750 0.26 -0.3
798,879 - HGI48_RS03750 0.26 -0.6
799,066 + HGI48_RS03750 0.38 -0.8
799,066 + HGI48_RS03750 0.38 +0.6
799,066 + HGI48_RS03750 0.38 +0.2
799,066 + HGI48_RS03750 0.38 -1.8
799,066 + HGI48_RS03750 0.38 +0.8
799,066 + HGI48_RS03750 0.38 +0.5
799,067 - HGI48_RS03750 0.38 +0.1
799,067 - HGI48_RS03750 0.38 +2.0
799,429 - HGI48_RS03750 0.62 -0.4
799,606 + HGI48_RS03750 0.73 -1.4
799,865 + HGI48_RS03750 0.90 +0.2
799,865 + HGI48_RS03750 0.90 -0.8
799,865 + HGI48_RS03750 0.90 -1.1
799,866 - HGI48_RS03750 0.90 -0.4
799,866 - HGI48_RS03750 0.90 -1.9
800,180 - HGI48_RS03755 0.14 -0.6
800,180 - HGI48_RS03755 0.14 -0.1
800,227 + HGI48_RS03755 0.18 -0.4
800,227 + HGI48_RS03755 0.18 -2.1
800,227 + -1.4
800,227 + HGI48_RS03755 0.18 +0.5
800,227 + HGI48_RS03755 0.18 -1.3
800,228 - HGI48_RS03755 0.18 +0.4
800,228 - HGI48_RS03755 0.18 +0.2
800,228 - HGI48_RS03755 0.18 +0.1
800,228 - HGI48_RS03755 0.18 +0.8
800,232 - HGI48_RS03755 0.19 +0.2
800,330 + HGI48_RS03755 0.28 -1.4
800,330 + HGI48_RS03755 0.28 -0.0
800,331 - HGI48_RS03755 0.28 +0.5
800,331 - HGI48_RS03755 0.28 -2.0
800,331 - HGI48_RS03755 0.28 -0.2
800,331 - HGI48_RS03755 0.28 +0.7
800,331 - HGI48_RS03755 0.28 +0.8
800,615 - +0.2
800,644 - -0.1
800,663 - -1.8
800,759 + HGI48_RS03755 0.70 +0.8
800,759 + HGI48_RS03755 0.70 -0.4
800,759 + HGI48_RS03755 0.70 -0.7
800,759 + HGI48_RS03755 0.70 -2.4
800,759 + HGI48_RS03755 0.70 -2.6
800,759 + HGI48_RS03755 0.70 -1.1
800,759 + HGI48_RS03755 0.70 -0.8
800,759 + HGI48_RS03755 0.70 +0.4
800,760 - HGI48_RS03755 0.70 +0.9
800,760 - HGI48_RS03755 0.70 -2.6
800,760 - HGI48_RS03755 0.70 -0.5
800,760 - HGI48_RS03755 0.70 -1.1
800,760 - HGI48_RS03755 0.70 +0.2
800,991 - -1.4
800,991 - -1.4

Or see this region's nucleotide sequence