Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03420 and HGI48_RS03425 overlap by 20 nucleotides HGI48_RS03425 and HGI48_RS03430 are separated by 94 nucleotides HGI48_RS03430 and HGI48_RS03435 are separated by 128 nucleotides
HGI48_RS03420: HGI48_RS03420 - FAD assembly factor SdhE, at 719,513 to 719,779
_RS03420
HGI48_RS03425: HGI48_RS03425 - protein YgfX, at 719,760 to 720,191
_RS03425
HGI48_RS03430: HGI48_RS03430 - flavodoxin FldB, at 720,286 to 720,804
_RS03430
HGI48_RS03435: HGI48_RS03435 - MHS family MFS transporter, at 720,933 to 722,258
_RS03435
Position (kb) 720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 719.290 kb on + strand at 719.290 kb on + strand at 719.357 kb on + strand at 719.358 kb on - strand at 719.358 kb on - strand at 719.358 kb on - strand at 719.377 kb on + strand at 719.378 kb on - strand at 719.380 kb on + strand at 719.392 kb on + strand at 719.393 kb on - strand at 719.415 kb on + strand at 719.418 kb on + strand at 719.421 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.439 kb on + strand at 719.444 kb on + strand at 719.444 kb on + strand at 719.444 kb on + strand at 719.444 kb on + strand at 719.450 kb on + strand at 719.450 kb on + strand at 719.451 kb on - strand at 719.537 kb on - strand at 719.606 kb on + strand, within HGI48_RS03420 at 719.783 kb on - strand at 720.107 kb on + strand at 720.108 kb on - strand, within HGI48_RS03425 at 720.190 kb on - strand at 720.196 kb on - strand at 720.292 kb on + strand at 720.293 kb on - strand at 720.293 kb on - strand at 720.293 kb on - strand at 720.392 kb on + strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.435 kb on - strand, within HGI48_RS03430 at 720.552 kb on - strand, within HGI48_RS03430 at 720.552 kb on - strand at 720.668 kb on + strand, within HGI48_RS03430 at 720.768 kb on - strand at 720.768 kb on - strand at 720.796 kb on + strand at 720.804 kb on + strand at 720.804 kb on + strand at 720.804 kb on + strand at 720.805 kb on - strand at 720.805 kb on - strand at 720.805 kb on - strand at 720.830 kb on + strand at 720.831 kb on - strand at 720.867 kb on - strand at 720.934 kb on + strand at 721.009 kb on + strand at 721.021 kb on + strand at 721.021 kb on + strand at 721.021 kb on + strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.061 kb on - strand at 721.098 kb on - strand at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.100 kb on - strand, within HGI48_RS03435 at 721.100 kb on - strand, within HGI48_RS03435 at 721.100 kb on - strand at 721.100 kb on - strand, within HGI48_RS03435 at 721.119 kb on - strand, within HGI48_RS03435 at 721.121 kb on - strand, within HGI48_RS03435 at 721.201 kb on - strand, within HGI48_RS03435 at 721.214 kb on + strand, within HGI48_RS03435 at 721.215 kb on - strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.436 kb on - strand, within HGI48_RS03435 at 721.436 kb on - strand, within HGI48_RS03435 at 721.447 kb on + strand, within HGI48_RS03435 at 721.447 kb on + strand, within HGI48_RS03435 at 721.447 kb on + strand at 721.447 kb on + strand, within HGI48_RS03435 at 721.462 kb on + strand, within HGI48_RS03435 at 721.463 kb on - strand, within HGI48_RS03435 at 721.463 kb on - strand, within HGI48_RS03435 at 721.474 kb on + strand at 721.474 kb on + strand at 721.474 kb on + strand, within HGI48_RS03435 at 721.474 kb on + strand, within HGI48_RS03435 at 721.475 kb on - strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand at 721.772 kb on - strand, within HGI48_RS03435
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 719,290 + +0.3 719,290 + -2.0 719,357 + -0.6 719,358 - -0.7 719,358 - +0.4 719,358 - -0.2 719,377 + -0.4 719,378 - +0.2 719,380 + -0.9 719,392 + -0.9 719,393 - +1.2 719,415 + -1.9 719,418 + +1.5 719,421 + +0.2 719,439 + -0.6 719,439 + -1.6 719,439 + -0.4 719,439 + -1.8 719,444 + -0.4 719,444 + +0.2 719,444 + +1.2 719,444 + -0.6 719,450 + -1.2 719,450 + +0.5 719,451 - -1.8 719,537 - +1.9 719,606 + HGI48_RS03420 0.35 +1.2 719,783 - -2.6 720,107 + -1.8 720,108 - HGI48_RS03425 0.81 -0.1 720,190 - +0.8 720,196 - +1.1 720,292 + -0.8 720,293 - -0.4 720,293 - -2.0 720,293 - -0.4 720,392 + HGI48_RS03430 0.20 +1.0 720,393 - HGI48_RS03430 0.21 -1.6 720,393 - HGI48_RS03430 0.21 +1.1 720,393 - HGI48_RS03430 0.21 -0.4 720,396 + HGI48_RS03430 0.21 +1.0 720,396 + HGI48_RS03430 0.21 -2.1 720,396 + HGI48_RS03430 0.21 +0.2 720,435 - HGI48_RS03430 0.29 +1.7 720,552 - HGI48_RS03430 0.51 +0.8 720,552 - +1.0 720,668 + HGI48_RS03430 0.74 -0.1 720,768 - +1.3 720,768 - +0.6 720,796 + +0.4 720,804 + +1.5 720,804 + +1.9 720,804 + +1.1 720,805 - -0.8 720,805 - +0.4 720,805 - +0.8 720,830 + +1.4 720,831 - -0.4 720,867 - -1.6 720,934 + -1.6 721,009 + -0.5 721,021 + +0.5 721,021 + -0.4 721,021 + +0.2 721,022 - +0.2 721,022 - -0.1 721,022 - -0.8 721,022 - +1.2 721,022 - +2.4 721,022 - -0.5 721,022 - -0.6 721,022 - +0.6 721,022 - -1.5 721,061 - +1.1 721,098 - -1.4 721,099 + HGI48_RS03435 0.13 -1.1 721,099 + HGI48_RS03435 0.13 +1.2 721,099 + HGI48_RS03435 0.13 +1.2 721,099 + HGI48_RS03435 0.13 +0.3 721,099 + HGI48_RS03435 0.13 -0.7 721,100 - HGI48_RS03435 0.13 -3.0 721,100 - HGI48_RS03435 0.13 +1.4 721,100 - +0.2 721,100 - HGI48_RS03435 0.13 -2.4 721,119 - HGI48_RS03435 0.14 -0.4 721,121 - HGI48_RS03435 0.14 -1.0 721,201 - HGI48_RS03435 0.20 -1.1 721,214 + HGI48_RS03435 0.21 +0.1 721,215 - HGI48_RS03435 0.21 +0.3 721,435 + HGI48_RS03435 0.38 +0.7 721,435 + HGI48_RS03435 0.38 +2.0 721,435 + HGI48_RS03435 0.38 +0.8 721,436 - HGI48_RS03435 0.38 -0.2 721,436 - HGI48_RS03435 0.38 +0.1 721,447 + HGI48_RS03435 0.39 -1.1 721,447 + HGI48_RS03435 0.39 +0.8 721,447 + -0.4 721,447 + HGI48_RS03435 0.39 -2.8 721,462 + HGI48_RS03435 0.40 +0.1 721,463 - HGI48_RS03435 0.40 +1.8 721,463 - HGI48_RS03435 0.40 -0.2 721,474 + -1.8 721,474 + +0.9 721,474 + HGI48_RS03435 0.41 -0.4 721,474 + HGI48_RS03435 0.41 +0.5 721,475 - HGI48_RS03435 0.41 -0.4 721,615 + HGI48_RS03435 0.51 +1.8 721,615 + HGI48_RS03435 0.51 +0.8 721,616 - HGI48_RS03435 0.52 -0.4 721,616 - HGI48_RS03435 0.52 -0.3 721,616 - HGI48_RS03435 0.52 +3.3 721,616 - HGI48_RS03435 0.52 +2.1 721,616 - HGI48_RS03435 0.52 -1.6 721,616 - -1.1 721,772 - HGI48_RS03435 0.63 +0.9
Or see this region's nucleotide sequence