Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11025

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
2,390,464	+				-2.2
2,390,464	+				-0.8
2,390,464	+				-0.3
2,390,464	+				-1.2
2,390,464	+				-1.1
2,390,464	+				-0.8
2,390,464	+				-0.4
2,390,464	+				-1.2
2,390,464	+				+0.6
2,390,464	+				-1.2
2,390,465	-				+0.2
2,390,465	-				-3.4
2,390,465	-				+1.5
2,390,465	-				-1.0
2,390,465	-				-1.2
2,390,465	-				+1.1
2,390,466	+				-1.0
2,390,467	-				-2.7
2,390,467	-				-1.8
2,390,467	-				-0.5
2,390,467	-				+0.1
2,390,467	-				-1.1
2,390,467	-				-2.0
2,390,467	-				-0.6
2,390,467	-				-0.8
2,390,467	-				+0.3
2,390,467	-				-1.9
2,390,467	-				-1.5
2,390,467	-				-1.5
2,390,514	-				+1.3
2,390,536	+				+0.4
2,390,564	-				-0.8
2,390,564	-				-1.8
2,390,575	+				-0.8
2,390,576	-				+0.6
2,390,576	-				-1.5
2,390,611	+				-1.3
2,390,612	-				+0.2
2,390,638	+				-1.5
2,390,642	+				+1.2
2,390,642	+				-0.5
2,390,643	-				-0.8
2,390,646	+				-1.2
2,390,647	-				-1.2
2,390,717	-				-0.2
2,390,733	-				-0.8
2,390,815	-				-1.2
2,390,841	+				+1.1
2,390,844	+				-0.2
2,390,844	+				-0.2
2,390,844	+				+0.4
2,390,844	+				-2.4
2,390,844	+				+0.8
2,390,849	+				+1.0
2,390,875	-				-2.7
2,390,875	-				+0.4
2,390,934	+				-0.3
2,390,934	+				-0.3
2,390,934	+				-1.6
2,390,935	-				-0.5
2,390,956	-				-1.2
2,390,959	-				+0.6
2,390,959	-				+0.8
2,390,959	-				-1.0
2,391,000	-				+0.4
2,391,011	+				-0.4
2,391,015	+				-1.5
2,391,015	+				-0.9
2,391,042	+				-0.8
2,391,048	+				+1.3
2,391,049	-				-0.8
2,391,184	+		HGI48_RS11020	0.78	+1.1
2,391,184	+				-1.8
2,391,184	+		HGI48_RS11020	0.78	-0.2
2,391,189	+		HGI48_RS11020	0.81	-1.4
2,391,189	+		HGI48_RS11020	0.81	+0.2
2,391,190	-		HGI48_RS11020	0.82	-0.2
2,391,223	+				+0.1
2,391,223	+				+0.5
2,391,223	+				-3.0
2,391,223	+				+0.3
2,391,223	+				-1.5
2,391,223	+				-2.2
2,391,224	-				-2.2
2,391,224	-				-2.4
2,391,224	-				-2.0
2,391,224	-				-2.0
2,391,224	-				-0.6
2,391,274	+				-0.9
2,391,274	+				-1.2
2,391,275	-				+1.0
2,391,300	+				+1.3
2,391,312	-				-0.0
2,391,323	+				-0.3
2,391,324	-				-2.0
2,391,324	-				+0.3
2,391,326	+				+1.7
2,391,327	-				+0.5
2,391,327	-				+0.4
2,391,327	-				-0.2
2,391,331	+				+0.1
2,391,331	+				-0.6
2,391,332	-				-0.7
2,391,334	-				-0.5
2,391,349	-				-1.4
2,391,394	+				-2.9
2,391,430	-				+0.8
2,391,447	+				+1.3
2,391,448	-				+0.8
2,391,471	+				+0.4
2,391,496	+				-1.2
2,391,496	+				-0.8
2,391,497	-				-0.4
2,391,497	-				-0.2
2,391,499	+				-0.3
2,391,500	-				-0.0
2,391,561	+		HGI48_RS11025	0.13	+0.5
2,391,561	+		HGI48_RS11025	0.13	-1.1
2,391,562	-		HGI48_RS11025	0.14	-1.5
2,391,646	+		HGI48_RS11025	0.23	+1.7
2,391,646	+		HGI48_RS11025	0.23	-1.4
2,391,646	+		HGI48_RS11025	0.23	-1.8
2,391,646	+		HGI48_RS11025	0.23	-1.2
2,391,647	-		HGI48_RS11025	0.24	+0.8
2,391,648	+		HGI48_RS11025	0.24	+0.5
2,391,648	+		HGI48_RS11025	0.24	-0.5
2,391,648	+		HGI48_RS11025	0.24	-2.5
2,391,648	+		HGI48_RS11025	0.24	+1.2
2,391,648	+				+0.2
2,391,648	+		HGI48_RS11025	0.24	-1.2
2,391,648	+		HGI48_RS11025	0.24	-1.5
2,391,648	+				-2.2
2,391,649	-		HGI48_RS11025	0.24	+0.9
2,391,649	-		HGI48_RS11025	0.24	-1.2
2,391,649	-		HGI48_RS11025	0.24	-0.6
2,391,649	-		HGI48_RS11025	0.24	+0.5
2,391,649	-		HGI48_RS11025	0.24	-0.8
2,391,649	-		HGI48_RS11025	0.24	-0.0
2,391,649	-		HGI48_RS11025	0.24	+0.5
2,391,667	+				-1.8
2,391,667	+		HGI48_RS11025	0.26	+1.1
2,391,668	-		HGI48_RS11025	0.26	-0.2
2,391,668	-		HGI48_RS11025	0.26	+1.3
2,391,668	-				-1.0
2,391,671	+		HGI48_RS11025	0.26	+0.8
2,391,671	+		HGI48_RS11025	0.26	-1.2
2,391,697	+		HGI48_RS11025	0.29	+0.9
2,391,697	+		HGI48_RS11025	0.29	-0.8
2,391,697	+		HGI48_RS11025	0.29	+0.3
2,391,698	-		HGI48_RS11025	0.29	+0.0
2,391,698	-		HGI48_RS11025	0.29	+0.3
2,391,798	+		HGI48_RS11025	0.41	+0.1
2,391,835	+		HGI48_RS11025	0.45	-1.0
2,391,867	+				-0.5
2,391,877	+		HGI48_RS11025	0.50	-0.1
2,391,879	+		HGI48_RS11025	0.51	-0.5
2,391,879	+		HGI48_RS11025	0.51	-0.9
2,391,880	-				-0.8
2,391,883	+		HGI48_RS11025	0.51	-1.8
2,391,884	-		HGI48_RS11025	0.51	-0.6
2,391,943	+		HGI48_RS11025	0.58	-1.8
2,392,001	+		HGI48_RS11025	0.65	-0.8
2,392,023	+		HGI48_RS11025	0.67	+0.6
2,392,023	+		HGI48_RS11025	0.67	-1.8
2,392,023	+		HGI48_RS11025	0.67	-0.8
2,392,027	+		HGI48_RS11025	0.68	-1.4
2,392,027	+		HGI48_RS11025	0.68	+1.0
2,392,027	+		HGI48_RS11025	0.68	+0.4
2,392,027	+		HGI48_RS11025	0.68	-1.1
2,392,027	+		HGI48_RS11025	0.68	-0.2
2,392,027	+		HGI48_RS11025	0.68	-1.3
2,392,027	+		HGI48_RS11025	0.68	+0.6
2,392,028	-		HGI48_RS11025	0.68	-0.2
2,392,028	-		HGI48_RS11025	0.68	-1.2
2,392,028	-				+1.3
2,392,029	+		HGI48_RS11025	0.68	-0.7
2,392,029	+				-1.8
2,392,030	-		HGI48_RS11025	0.68	+2.2
2,392,040	+		HGI48_RS11025	0.69	-2.4
2,392,040	+		HGI48_RS11025	0.69	+0.2
2,392,041	-		HGI48_RS11025	0.70	+0.6
2,392,115	+		HGI48_RS11025	0.78	-0.1
2,392,115	+		HGI48_RS11025	0.78	-3.0
2,392,116	-		HGI48_RS11025	0.78	-0.8
2,392,116	-				-2.0
2,392,120	+		HGI48_RS11025	0.79	+0.7
2,392,120	+		HGI48_RS11025	0.79	-0.4
2,392,120	+		HGI48_RS11025	0.79	+0.1
2,392,120	+		HGI48_RS11025	0.79	-3.1
2,392,121	-				+0.1
2,392,121	-		HGI48_RS11025	0.79	-1.1
2,392,121	-		HGI48_RS11025	0.79	-0.2
2,392,121	-		HGI48_RS11025	0.79	+0.6
2,392,121	-		HGI48_RS11025	0.79	+1.2
2,392,121	-		HGI48_RS11025	0.79	+1.0
2,392,123	-		HGI48_RS11025	0.79	+0.6
2,392,123	-		HGI48_RS11025	0.79	+0.5
2,392,123	-		HGI48_RS11025	0.79	+1.3
2,392,134	+		HGI48_RS11025	0.80	-1.5
2,392,240	-				+0.8
2,392,240	-				+0.3
2,392,262	-				-1.5
2,392,279	+				-0.1
2,392,301	-				-0.6
2,392,302	+				+0.3
2,392,302	+				-0.0
2,392,303	-				-0.5
2,392,303	-				+0.3
2,392,303	-				-2.0
2,392,303	-				-0.4
2,392,342	+				+0.1
2,392,343	-				+0.4
2,392,343	-				+0.5
2,392,363	+				+0.8
2,392,363	+				-0.6
2,392,389	+				+0.7
2,392,413	+				-0.3
2,392,421	+				+1.9
2,392,421	+				-0.4
2,392,421	+				+0.3
2,392,422	-				-0.3
2,392,422	-				-0.8
2,392,426	-				+0.8
2,392,459	-				-0.8