Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08260 and HGI48_RS08265 overlap by 1 nucleotides HGI48_RS08265 and HGI48_RS08270 are separated by 529 nucleotides HGI48_RS08270 and HGI48_RS08275 overlap by 9 nucleotides HGI48_RS08275 and HGI48_RS08280 are separated by 267 nucleotides
HGI48_RS08260: HGI48_RS08260 - tyrosine-type recombinase/integrase, at 1,773,629 to 1,774,663
_RS08260
HGI48_RS08265: HGI48_RS08265 - DUF4224 domain-containing protein, at 1,774,663 to 1,774,887
_RS08265
HGI48_RS08270: HGI48_RS08270 - DNA repair protein RadC, at 1,775,417 to 1,775,926
_RS08270
HGI48_RS08275: HGI48_RS08275 - hypothetical protein, at 1,775,918 to 1,776,250
_RS08275
HGI48_RS08280: HGI48_RS08280 - DUF736 domain-containing protein, at 1,776,518 to 1,776,829
_RS08280
Position (kb) 1775
1776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1774.502 kb on + strand, within HGI48_RS08260 at 1774.502 kb on + strand, within HGI48_RS08260 at 1774.503 kb on - strand, within HGI48_RS08260 at 1774.516 kb on - strand, within HGI48_RS08260 at 1774.516 kb on - strand, within HGI48_RS08260 at 1774.516 kb on - strand, within HGI48_RS08260 at 1774.526 kb on + strand, within HGI48_RS08260 at 1774.526 kb on + strand, within HGI48_RS08260 at 1774.527 kb on - strand, within HGI48_RS08260 at 1774.527 kb on - strand at 1774.633 kb on + strand at 1774.665 kb on - strand at 1774.665 kb on - strand at 1774.665 kb on - strand at 1774.720 kb on - strand, within HGI48_RS08265 at 1774.750 kb on - strand, within HGI48_RS08265 at 1774.750 kb on - strand, within HGI48_RS08265 at 1774.777 kb on - strand, within HGI48_RS08265 at 1774.783 kb on + strand, within HGI48_RS08265 at 1774.827 kb on + strand, within HGI48_RS08265 at 1774.827 kb on + strand, within HGI48_RS08265 at 1774.827 kb on + strand at 1774.828 kb on - strand, within HGI48_RS08265 at 1774.828 kb on - strand, within HGI48_RS08265 at 1774.828 kb on - strand, within HGI48_RS08265 at 1774.881 kb on + strand at 1774.882 kb on - strand at 1774.891 kb on + strand at 1774.891 kb on + strand at 1774.892 kb on - strand at 1774.923 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1774.953 kb on + strand at 1775.100 kb on + strand at 1775.101 kb on - strand at 1775.101 kb on - strand at 1775.196 kb on + strand at 1775.196 kb on + strand at 1775.197 kb on - strand at 1775.199 kb on - strand at 1775.229 kb on + strand at 1775.230 kb on - strand at 1775.278 kb on + strand at 1775.278 kb on + strand at 1775.410 kb on + strand at 1775.411 kb on - strand at 1775.411 kb on - strand at 1775.411 kb on - strand at 1775.411 kb on - strand at 1775.411 kb on - strand at 1775.468 kb on - strand at 1775.481 kb on - strand at 1775.547 kb on + strand, within HGI48_RS08270 at 1775.585 kb on + strand at 1775.585 kb on + strand, within HGI48_RS08270 at 1775.585 kb on + strand, within HGI48_RS08270 at 1775.585 kb on + strand, within HGI48_RS08270 at 1775.585 kb on + strand, within HGI48_RS08270 at 1775.586 kb on - strand, within HGI48_RS08270 at 1775.586 kb on - strand, within HGI48_RS08270 at 1775.586 kb on - strand, within HGI48_RS08270 at 1775.666 kb on + strand, within HGI48_RS08270 at 1775.681 kb on + strand, within HGI48_RS08270 at 1775.682 kb on - strand, within HGI48_RS08270 at 1775.708 kb on + strand, within HGI48_RS08270 at 1775.789 kb on - strand, within HGI48_RS08270 at 1775.789 kb on - strand, within HGI48_RS08270 at 1775.919 kb on + strand at 1775.920 kb on - strand at 1776.071 kb on + strand, within HGI48_RS08275 at 1776.071 kb on + strand at 1776.071 kb on + strand, within HGI48_RS08275 at 1776.071 kb on + strand, within HGI48_RS08275 at 1776.072 kb on - strand, within HGI48_RS08275 at 1776.097 kb on + strand, within HGI48_RS08275 at 1776.098 kb on - strand, within HGI48_RS08275 at 1776.098 kb on - strand, within HGI48_RS08275 at 1776.098 kb on - strand, within HGI48_RS08275 at 1776.098 kb on - strand, within HGI48_RS08275 at 1776.112 kb on + strand, within HGI48_RS08275 at 1776.113 kb on - strand, within HGI48_RS08275 at 1776.277 kb on + strand at 1776.277 kb on + strand at 1776.277 kb on + strand at 1776.277 kb on + strand at 1776.278 kb on - strand at 1776.278 kb on - strand at 1776.278 kb on - strand at 1776.278 kb on - strand at 1776.514 kb on + strand at 1776.514 kb on + strand at 1776.514 kb on + strand at 1776.514 kb on + strand at 1776.514 kb on + strand at 1776.514 kb on + strand at 1776.515 kb on - strand at 1776.515 kb on - strand at 1776.515 kb on - strand at 1776.524 kb on - strand at 1776.598 kb on + strand at 1776.598 kb on + strand, within HGI48_RS08280 at 1776.599 kb on - strand, within HGI48_RS08280 at 1776.599 kb on - strand, within HGI48_RS08280 at 1776.713 kb on + strand, within HGI48_RS08280 at 1776.714 kb on - strand, within HGI48_RS08280 at 1776.714 kb on - strand at 1776.759 kb on - strand, within HGI48_RS08280 at 1776.791 kb on + strand, within HGI48_RS08280 at 1776.791 kb on + strand, within HGI48_RS08280 at 1776.791 kb on + strand, within HGI48_RS08280 at 1776.791 kb on + strand, within HGI48_RS08280 at 1776.791 kb on + strand, within HGI48_RS08280 at 1776.791 kb on + strand, within HGI48_RS08280 at 1776.792 kb on - strand at 1776.792 kb on - strand at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.792 kb on - strand, within HGI48_RS08280 at 1776.794 kb on - strand at 1776.870 kb on + strand at 1776.870 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 1,774,502 + HGI48_RS08260 0.84 -1.7 1,774,502 + HGI48_RS08260 0.84 -0.8 1,774,503 - HGI48_RS08260 0.84 -0.0 1,774,516 - HGI48_RS08260 0.86 -1.9 1,774,516 - HGI48_RS08260 0.86 -1.0 1,774,516 - HGI48_RS08260 0.86 -0.3 1,774,526 + HGI48_RS08260 0.87 +0.1 1,774,526 + HGI48_RS08260 0.87 -0.4 1,774,527 - HGI48_RS08260 0.87 -1.6 1,774,527 - -1.6 1,774,633 + -0.0 1,774,665 - -1.6 1,774,665 - -1.0 1,774,665 - +0.1 1,774,720 - HGI48_RS08265 0.25 +0.1 1,774,750 - HGI48_RS08265 0.39 -1.0 1,774,750 - HGI48_RS08265 0.39 -0.5 1,774,777 - HGI48_RS08265 0.51 +0.5 1,774,783 + HGI48_RS08265 0.53 -0.5 1,774,827 + HGI48_RS08265 0.73 -1.6 1,774,827 + HGI48_RS08265 0.73 +1.4 1,774,827 + -1.6 1,774,828 - HGI48_RS08265 0.73 -0.9 1,774,828 - HGI48_RS08265 0.73 -1.0 1,774,828 - HGI48_RS08265 0.73 -1.6 1,774,881 + +0.4 1,774,882 - -1.3 1,774,891 + +1.0 1,774,891 + -1.0 1,774,892 - -0.3 1,774,923 + +0.9 1,774,953 + -0.6 1,774,953 + +0.6 1,774,953 + +1.5 1,774,953 + +0.7 1,774,953 + +0.1 1,774,953 + -0.8 1,774,953 + -1.0 1,774,953 + -0.0 1,774,953 + +0.1 1,774,953 + -1.6 1,774,953 + -0.9 1,774,953 + -1.9 1,774,953 + -2.2 1,774,953 + +0.6 1,774,953 + -0.4 1,775,100 + +0.4 1,775,101 - -2.0 1,775,101 - -1.0 1,775,196 + +0.7 1,775,196 + -1.9 1,775,197 - -1.0 1,775,199 - -3.3 1,775,229 + +0.1 1,775,230 - +0.7 1,775,278 + -0.6 1,775,278 + +1.0 1,775,410 + +0.6 1,775,411 - -0.0 1,775,411 - -0.9 1,775,411 - +1.7 1,775,411 - +3.0 1,775,411 - -1.6 1,775,468 - -1.9 1,775,481 - -0.4 1,775,547 + HGI48_RS08270 0.25 -3.1 1,775,585 + -1.4 1,775,585 + HGI48_RS08270 0.33 -1.0 1,775,585 + HGI48_RS08270 0.33 -0.6 1,775,585 + HGI48_RS08270 0.33 +0.2 1,775,585 + HGI48_RS08270 0.33 +0.2 1,775,586 - HGI48_RS08270 0.33 -1.5 1,775,586 - HGI48_RS08270 0.33 +0.3 1,775,586 - HGI48_RS08270 0.33 -0.2 1,775,666 + HGI48_RS08270 0.49 +1.0 1,775,681 + HGI48_RS08270 0.52 -1.9 1,775,682 - HGI48_RS08270 0.52 -0.2 1,775,708 + HGI48_RS08270 0.57 +0.0 1,775,789 - HGI48_RS08270 0.73 +0.6 1,775,789 - HGI48_RS08270 0.73 -0.6 1,775,919 + +0.4 1,775,920 - -0.0 1,776,071 + HGI48_RS08275 0.46 +0.1 1,776,071 + -0.6 1,776,071 + HGI48_RS08275 0.46 +0.5 1,776,071 + HGI48_RS08275 0.46 -0.2 1,776,072 - HGI48_RS08275 0.46 -1.8 1,776,097 + HGI48_RS08275 0.54 +0.7 1,776,098 - HGI48_RS08275 0.54 +0.4 1,776,098 - HGI48_RS08275 0.54 -1.0 1,776,098 - HGI48_RS08275 0.54 -0.4 1,776,098 - HGI48_RS08275 0.54 -0.0 1,776,112 + HGI48_RS08275 0.58 -3.4 1,776,113 - HGI48_RS08275 0.59 -1.8 1,776,277 + +2.2 1,776,277 + +0.2 1,776,277 + -2.5 1,776,277 + +1.0 1,776,278 - -0.5 1,776,278 - -0.9 1,776,278 - +0.4 1,776,278 - -0.2 1,776,514 + +0.5 1,776,514 + -1.6 1,776,514 + +0.1 1,776,514 + -0.5 1,776,514 + -0.8 1,776,514 + -1.9 1,776,515 - -0.4 1,776,515 - -1.6 1,776,515 - -0.2 1,776,524 - +1.3 1,776,598 + -0.4 1,776,598 + HGI48_RS08280 0.26 -2.0 1,776,599 - HGI48_RS08280 0.26 +1.4 1,776,599 - HGI48_RS08280 0.26 +1.3 1,776,713 + HGI48_RS08280 0.62 -1.2 1,776,714 - HGI48_RS08280 0.63 -1.4 1,776,714 - +0.6 1,776,759 - HGI48_RS08280 0.77 -1.9 1,776,791 + HGI48_RS08280 0.88 -2.0 1,776,791 + HGI48_RS08280 0.88 -0.6 1,776,791 + HGI48_RS08280 0.88 +0.0 1,776,791 + HGI48_RS08280 0.88 -0.0 1,776,791 + HGI48_RS08280 0.88 +2.0 1,776,791 + HGI48_RS08280 0.88 +1.0 1,776,792 - +1.3 1,776,792 - -1.9 1,776,792 - HGI48_RS08280 0.88 -0.3 1,776,792 - HGI48_RS08280 0.88 +1.0 1,776,792 - HGI48_RS08280 0.88 -1.4 1,776,792 - HGI48_RS08280 0.88 -0.8 1,776,792 - HGI48_RS08280 0.88 -1.4 1,776,792 - HGI48_RS08280 0.88 -1.9 1,776,792 - HGI48_RS08280 0.88 +0.7 1,776,792 - HGI48_RS08280 0.88 +2.5 1,776,794 - -0.3 1,776,870 + +1.1 1,776,870 + -0.9
Or see this region's nucleotide sequence