Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03760 and HGI48_RS03765 are separated by 72 nucleotides HGI48_RS03765 and HGI48_RS03770 are separated by 26 nucleotides HGI48_RS03770 and HGI48_RS03775 are separated by 23 nucleotides
HGI48_RS03760: HGI48_RS03760 - Gfo/Idh/MocA family oxidoreductase, at 801,091 to 802,239
_RS03760
HGI48_RS03765: HGI48_RS03765 - 5-dehydro-2-deoxygluconokinase, at 802,312 to 804,297
_RS03765
HGI48_RS03770: HGI48_RS03770 - myo-inosose-2 dehydratase, at 804,324 to 805,214
_RS03770
HGI48_RS03775: HGI48_RS03775 - 5-deoxy-glucuronate isomerase, at 805,238 to 806,065
_RS03775
Position (kb) 802
803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 801.388 kb on + strand, within HGI48_RS03760 at 801.389 kb on - strand, within HGI48_RS03760 at 801.484 kb on + strand, within HGI48_RS03760 at 801.484 kb on + strand at 801.484 kb on + strand, within HGI48_RS03760 at 801.485 kb on - strand, within HGI48_RS03760 at 801.485 kb on - strand, within HGI48_RS03760 at 801.485 kb on - strand, within HGI48_RS03760 at 801.580 kb on + strand, within HGI48_RS03760 at 801.581 kb on - strand, within HGI48_RS03760 at 801.581 kb on - strand, within HGI48_RS03760 at 801.581 kb on - strand, within HGI48_RS03760 at 801.675 kb on + strand, within HGI48_RS03760 at 801.676 kb on - strand, within HGI48_RS03760 at 801.686 kb on - strand, within HGI48_RS03760 at 801.883 kb on + strand, within HGI48_RS03760 at 801.884 kb on - strand, within HGI48_RS03760 at 801.884 kb on - strand, within HGI48_RS03760 at 801.884 kb on - strand, within HGI48_RS03760 at 801.884 kb on - strand, within HGI48_RS03760 at 801.913 kb on - strand, within HGI48_RS03760 at 801.913 kb on - strand, within HGI48_RS03760 at 801.913 kb on - strand, within HGI48_RS03760 at 801.913 kb on - strand, within HGI48_RS03760 at 801.913 kb on - strand, within HGI48_RS03760 at 802.059 kb on + strand, within HGI48_RS03760 at 802.060 kb on - strand, within HGI48_RS03760 at 802.208 kb on + strand at 802.208 kb on + strand at 802.209 kb on - strand at 802.209 kb on - strand at 802.209 kb on - strand at 802.273 kb on + strand at 802.278 kb on + strand at 802.279 kb on - strand at 802.279 kb on - strand at 802.279 kb on - strand at 802.279 kb on - strand at 802.288 kb on - strand at 802.299 kb on - strand at 802.310 kb on + strand at 802.310 kb on + strand at 802.310 kb on + strand at 802.310 kb on + strand at 802.310 kb on + strand at 802.310 kb on + strand at 802.310 kb on + strand at 802.311 kb on - strand at 802.311 kb on - strand at 802.311 kb on - strand at 802.311 kb on - strand at 802.311 kb on - strand at 802.311 kb on - strand at 802.369 kb on + strand at 802.420 kb on + strand at 802.420 kb on + strand at 802.421 kb on - strand at 802.668 kb on + strand, within HGI48_RS03765 at 802.668 kb on + strand, within HGI48_RS03765 at 802.668 kb on + strand, within HGI48_RS03765 at 802.669 kb on - strand at 802.669 kb on - strand, within HGI48_RS03765 at 802.669 kb on - strand, within HGI48_RS03765 at 802.669 kb on - strand, within HGI48_RS03765 at 802.696 kb on + strand, within HGI48_RS03765 at 802.696 kb on + strand at 802.696 kb on + strand, within HGI48_RS03765 at 802.696 kb on + strand, within HGI48_RS03765 at 802.696 kb on + strand, within HGI48_RS03765 at 802.697 kb on - strand, within HGI48_RS03765 at 802.697 kb on - strand, within HGI48_RS03765 at 802.697 kb on - strand at 802.697 kb on - strand, within HGI48_RS03765 at 802.783 kb on + strand, within HGI48_RS03765 at 802.989 kb on - strand, within HGI48_RS03765 at 803.134 kb on - strand, within HGI48_RS03765 at 803.139 kb on - strand, within HGI48_RS03765 at 803.139 kb on - strand, within HGI48_RS03765 at 803.161 kb on - strand, within HGI48_RS03765 at 803.182 kb on + strand, within HGI48_RS03765 at 803.183 kb on - strand, within HGI48_RS03765 at 803.183 kb on - strand, within HGI48_RS03765 at 803.299 kb on + strand, within HGI48_RS03765 at 803.299 kb on + strand at 803.300 kb on - strand, within HGI48_RS03765 at 803.300 kb on - strand, within HGI48_RS03765 at 803.300 kb on - strand, within HGI48_RS03765 at 803.300 kb on - strand, within HGI48_RS03765 at 803.567 kb on + strand at 803.609 kb on + strand, within HGI48_RS03765 at 803.630 kb on + strand, within HGI48_RS03765 at 803.630 kb on + strand, within HGI48_RS03765 at 803.631 kb on - strand, within HGI48_RS03765 at 803.631 kb on - strand at 803.631 kb on - strand, within HGI48_RS03765 at 803.631 kb on - strand, within HGI48_RS03765 at 803.633 kb on + strand, within HGI48_RS03765 at 803.634 kb on - strand at 803.668 kb on - strand, within HGI48_RS03765 at 803.668 kb on - strand, within HGI48_RS03765 at 803.971 kb on + strand, within HGI48_RS03765 at 803.972 kb on - strand, within HGI48_RS03765 at 803.972 kb on - strand, within HGI48_RS03765 at 803.972 kb on - strand, within HGI48_RS03765 at 804.116 kb on + strand at 804.116 kb on + strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.117 kb on - strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.255 kb on + strand at 804.256 kb on - strand at 804.256 kb on - strand at 804.259 kb on + strand at 804.259 kb on + strand at 804.259 kb on + strand at 804.259 kb on + strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.260 kb on - strand at 804.305 kb on + strand at 804.306 kb on - strand at 804.306 kb on - strand at 804.344 kb on + strand at 804.345 kb on - strand at 804.345 kb on - strand at 804.345 kb on - strand at 804.345 kb on - strand at 804.532 kb on - strand, within HGI48_RS03770 at 804.718 kb on - strand, within HGI48_RS03770 at 804.726 kb on - strand, within HGI48_RS03770 at 804.750 kb on - strand at 804.788 kb on + strand, within HGI48_RS03770 at 804.950 kb on + strand, within HGI48_RS03770 at 804.950 kb on + strand at 804.950 kb on + strand at 804.950 kb on + strand, within HGI48_RS03770 at 805.060 kb on - strand, within HGI48_RS03770 at 805.155 kb on + strand at 805.155 kb on + strand at 805.156 kb on - strand at 805.218 kb on + strand at 805.248 kb on + strand at 805.248 kb on + strand at 805.248 kb on + strand at 805.248 kb on + strand at 805.249 kb on - strand at 805.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 801,388 + HGI48_RS03760 0.26 +0.8 801,389 - HGI48_RS03760 0.26 -1.1 801,484 + HGI48_RS03760 0.34 +1.0 801,484 + +2.1 801,484 + HGI48_RS03760 0.34 -1.9 801,485 - HGI48_RS03760 0.34 +0.1 801,485 - HGI48_RS03760 0.34 -1.9 801,485 - HGI48_RS03760 0.34 -1.0 801,580 + HGI48_RS03760 0.43 -0.8 801,581 - HGI48_RS03760 0.43 +1.8 801,581 - HGI48_RS03760 0.43 -1.3 801,581 - HGI48_RS03760 0.43 +0.0 801,675 + HGI48_RS03760 0.51 +0.4 801,676 - HGI48_RS03760 0.51 -0.3 801,686 - HGI48_RS03760 0.52 -0.9 801,883 + HGI48_RS03760 0.69 +1.7 801,884 - HGI48_RS03760 0.69 -0.1 801,884 - HGI48_RS03760 0.69 +0.7 801,884 - HGI48_RS03760 0.69 -0.5 801,884 - HGI48_RS03760 0.69 -1.9 801,913 - HGI48_RS03760 0.72 -1.3 801,913 - HGI48_RS03760 0.72 +0.8 801,913 - HGI48_RS03760 0.72 +0.2 801,913 - HGI48_RS03760 0.72 -2.6 801,913 - HGI48_RS03760 0.72 +1.3 802,059 + HGI48_RS03760 0.84 -1.0 802,060 - HGI48_RS03760 0.84 +0.5 802,208 + +1.2 802,208 + +0.0 802,209 - -1.8 802,209 - +1.4 802,209 - -0.1 802,273 + -2.1 802,278 + +0.6 802,279 - +0.1 802,279 - +0.5 802,279 - +1.9 802,279 - -1.6 802,288 - -1.2 802,299 - -1.8 802,310 + +0.4 802,310 + -2.8 802,310 + +0.8 802,310 + +1.2 802,310 + -0.3 802,310 + -0.8 802,310 + +1.2 802,311 - -0.3 802,311 - -1.1 802,311 - +0.0 802,311 - +0.2 802,311 - -1.6 802,311 - -0.2 802,369 + -0.0 802,420 + -0.8 802,420 + +0.7 802,421 - +1.0 802,668 + HGI48_RS03765 0.18 -0.3 802,668 + HGI48_RS03765 0.18 -1.4 802,668 + HGI48_RS03765 0.18 -1.0 802,669 - -2.2 802,669 - HGI48_RS03765 0.18 +1.0 802,669 - HGI48_RS03765 0.18 +0.4 802,669 - HGI48_RS03765 0.18 -0.8 802,696 + HGI48_RS03765 0.19 -1.0 802,696 + -1.3 802,696 + HGI48_RS03765 0.19 -1.9 802,696 + HGI48_RS03765 0.19 -0.8 802,696 + HGI48_RS03765 0.19 +1.2 802,697 - HGI48_RS03765 0.19 +0.2 802,697 - HGI48_RS03765 0.19 +0.1 802,697 - -1.1 802,697 - HGI48_RS03765 0.19 -0.8 802,783 + HGI48_RS03765 0.24 -1.6 802,989 - HGI48_RS03765 0.34 -1.1 803,134 - HGI48_RS03765 0.41 +0.8 803,139 - HGI48_RS03765 0.42 +1.8 803,139 - HGI48_RS03765 0.42 +0.9 803,161 - HGI48_RS03765 0.43 -1.4 803,182 + HGI48_RS03765 0.44 -0.2 803,183 - HGI48_RS03765 0.44 +0.8 803,183 - HGI48_RS03765 0.44 +1.0 803,299 + HGI48_RS03765 0.50 -1.3 803,299 + -0.1 803,300 - HGI48_RS03765 0.50 -0.4 803,300 - HGI48_RS03765 0.50 -0.3 803,300 - HGI48_RS03765 0.50 +1.0 803,300 - HGI48_RS03765 0.50 -2.6 803,567 + -0.6 803,609 + HGI48_RS03765 0.65 +0.8 803,630 + HGI48_RS03765 0.66 +1.7 803,630 + HGI48_RS03765 0.66 +0.2 803,631 - HGI48_RS03765 0.66 -0.6 803,631 - -0.1 803,631 - HGI48_RS03765 0.66 +2.4 803,631 - HGI48_RS03765 0.66 -0.3 803,633 + HGI48_RS03765 0.67 +0.9 803,634 - -0.1 803,668 - HGI48_RS03765 0.68 -1.1 803,668 - HGI48_RS03765 0.68 -0.2 803,971 + HGI48_RS03765 0.84 -0.8 803,972 - HGI48_RS03765 0.84 -1.7 803,972 - HGI48_RS03765 0.84 -0.2 803,972 - HGI48_RS03765 0.84 -1.1 804,116 + -0.1 804,116 + -0.4 804,117 - +1.8 804,117 - -0.3 804,117 - -1.1 804,117 - -0.8 804,117 - -0.5 804,117 - +1.6 804,117 - -0.4 804,255 + -1.6 804,255 + -1.8 804,255 + -1.1 804,255 + +0.5 804,256 - -1.8 804,256 - +0.2 804,259 + -0.2 804,259 + +0.6 804,259 + +0.7 804,259 + +1.2 804,260 - -2.1 804,260 - -1.1 804,260 - -0.5 804,260 - -0.5 804,260 - -2.4 804,305 + -0.8 804,306 - +0.2 804,306 - -1.9 804,344 + -2.4 804,345 - +0.6 804,345 - -1.8 804,345 - -0.7 804,345 - -1.6 804,532 - HGI48_RS03770 0.23 -0.4 804,718 - HGI48_RS03770 0.44 -1.4 804,726 - HGI48_RS03770 0.45 -0.4 804,750 - -1.6 804,788 + HGI48_RS03770 0.52 +0.1 804,950 + HGI48_RS03770 0.70 +0.7 804,950 + -0.1 804,950 + -2.4 804,950 + HGI48_RS03770 0.70 -2.1 805,060 - HGI48_RS03770 0.83 +0.6 805,155 + -1.1 805,155 + -0.2 805,156 - +0.4 805,218 + +0.5 805,248 + +0.0 805,248 + -1.4 805,248 + -0.1 805,248 + -0.8 805,249 - -1.1 805,249 - +0.2
Or see this region's nucleotide sequence