Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02570

Experiment: M9+sucrose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS02565 and HGI48_RS02570 are separated by 302 nucleotidesHGI48_RS02570 and HGI48_RS02575 are separated by 33 nucleotides HGI48_RS02565: HGI48_RS02565 - N-acetylglucosamine kinase, at 553,610 to 554,497 _RS02565 HGI48_RS02570: HGI48_RS02570 - Gfo/Idh/MocA family oxidoreductase, at 554,800 to 555,951 _RS02570 HGI48_RS02575: HGI48_RS02575 - heavy metal translocating P-type ATPase, at 555,985 to 558,390 _RS02575 Position (kb) 554 555 556Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 553.829 kb on + strand, within HGI48_RS02565at 553.829 kb on + strand, within HGI48_RS02565at 553.829 kb on + strand, within HGI48_RS02565at 553.829 kb on + strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strandat 553.830 kb on - strand, within HGI48_RS02565at 553.830 kb on - strand, within HGI48_RS02565at 553.939 kb on + strand, within HGI48_RS02565at 553.939 kb on + strandat 553.939 kb on + strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 553.940 kb on - strand, within HGI48_RS02565at 554.018 kb on + strand, within HGI48_RS02565at 554.173 kb on + strand, within HGI48_RS02565at 554.173 kb on + strand, within HGI48_RS02565at 554.234 kb on + strand, within HGI48_RS02565at 554.235 kb on - strand, within HGI48_RS02565at 554.290 kb on + strand, within HGI48_RS02565at 554.291 kb on - strandat 554.291 kb on - strand, within HGI48_RS02565at 554.328 kb on - strand, within HGI48_RS02565at 554.328 kb on - strand, within HGI48_RS02565at 554.351 kb on - strand, within HGI48_RS02565at 554.383 kb on - strand, within HGI48_RS02565at 554.383 kb on - strand, within HGI48_RS02565at 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.484 kb on + strandat 554.485 kb on - strandat 554.485 kb on - strandat 554.489 kb on + strandat 554.490 kb on - strandat 554.490 kb on - strandat 554.490 kb on - strandat 554.490 kb on - strandat 554.545 kb on + strandat 554.584 kb on + strandat 554.752 kb on + strandat 554.797 kb on + strandat 554.797 kb on + strandat 554.797 kb on + strandat 554.798 kb on - strandat 554.798 kb on - strandat 554.798 kb on - strandat 554.860 kb on - strandat 555.024 kb on + strand, within HGI48_RS02570at 555.024 kb on + strandat 555.025 kb on - strand, within HGI48_RS02570at 555.054 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.065 kb on - strand, within HGI48_RS02570at 555.190 kb on + strand, within HGI48_RS02570at 555.191 kb on - strand, within HGI48_RS02570at 555.237 kb on + strandat 555.238 kb on - strand, within HGI48_RS02570at 555.238 kb on - strand, within HGI48_RS02570at 555.238 kb on - strand, within HGI48_RS02570at 555.307 kb on + strandat 555.307 kb on + strandat 555.308 kb on - strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.328 kb on + strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.329 kb on - strand, within HGI48_RS02570at 555.330 kb on + strand, within HGI48_RS02570at 555.330 kb on + strandat 555.330 kb on + strand, within HGI48_RS02570at 555.330 kb on + strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strandat 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.331 kb on - strand, within HGI48_RS02570at 555.453 kb on + strand, within HGI48_RS02570at 555.453 kb on + strand, within HGI48_RS02570at 555.475 kb on + strand, within HGI48_RS02570at 555.475 kb on + strand, within HGI48_RS02570at 555.484 kb on - strandat 555.565 kb on + strand, within HGI48_RS02570at 555.566 kb on - strandat 555.566 kb on - strand, within HGI48_RS02570at 555.566 kb on - strand, within HGI48_RS02570at 555.730 kb on + strand, within HGI48_RS02570at 555.731 kb on - strand, within HGI48_RS02570at 555.731 kb on - strand, within HGI48_RS02570at 555.738 kb on + strand, within HGI48_RS02570at 555.745 kb on + strand, within HGI48_RS02570at 555.746 kb on - strand, within HGI48_RS02570at 555.746 kb on - strand, within HGI48_RS02570at 555.746 kb on - strandat 555.746 kb on - strand, within HGI48_RS02570at 555.854 kb on + strandat 555.862 kb on - strandat 555.862 kb on - strandat 555.891 kb on + strandat 555.979 kb on + strandat 555.979 kb on + strandat 555.986 kb on + strandat 555.987 kb on - strandat 556.069 kb on + strandat 556.182 kb on + strandat 556.183 kb on - strandat 556.417 kb on + strand, within HGI48_RS02575at 556.417 kb on + strand, within HGI48_RS02575at 556.417 kb on + strand, within HGI48_RS02575at 556.418 kb on - strand, within HGI48_RS02575at 556.418 kb on - strand, within HGI48_RS02575at 556.418 kb on - strandat 556.445 kb on + strand, within HGI48_RS02575at 556.477 kb on + strand, within HGI48_RS02575at 556.477 kb on + strand, within HGI48_RS02575at 556.478 kb on - strand, within HGI48_RS02575at 556.683 kb on - strand, within HGI48_RS02575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
remove
553,829 + HGI48_RS02565 0.25 -1.7
553,829 + HGI48_RS02565 0.25 -0.6
553,829 + HGI48_RS02565 0.25 -0.4
553,829 + HGI48_RS02565 0.25 +0.7
553,830 - HGI48_RS02565 0.25 -2.1
553,830 - HGI48_RS02565 0.25 +1.0
553,830 - HGI48_RS02565 0.25 -0.8
553,830 - HGI48_RS02565 0.25 -2.2
553,830 - HGI48_RS02565 0.25 -1.4
553,830 - HGI48_RS02565 0.25 +0.4
553,830 - -1.2
553,830 - HGI48_RS02565 0.25 -2.4
553,830 - HGI48_RS02565 0.25 +0.4
553,939 + HGI48_RS02565 0.37 -1.5
553,939 + -0.2
553,939 + HGI48_RS02565 0.37 -3.3
553,940 - HGI48_RS02565 0.37 -0.6
553,940 - HGI48_RS02565 0.37 -1.6
553,940 - HGI48_RS02565 0.37 -1.3
553,940 - HGI48_RS02565 0.37 -2.4
554,018 + HGI48_RS02565 0.46 -1.2
554,173 + HGI48_RS02565 0.63 +0.9
554,173 + HGI48_RS02565 0.63 -1.0
554,234 + HGI48_RS02565 0.70 -1.2
554,235 - HGI48_RS02565 0.70 -0.7
554,290 + HGI48_RS02565 0.77 -1.6
554,291 - -2.1
554,291 - HGI48_RS02565 0.77 -0.5
554,328 - HGI48_RS02565 0.81 +1.8
554,328 - HGI48_RS02565 0.81 -1.2
554,351 - HGI48_RS02565 0.83 -0.9
554,383 - HGI48_RS02565 0.87 -1.6
554,383 - HGI48_RS02565 0.87 +0.1
554,484 + -0.5
554,484 + -3.0
554,484 + +0.4
554,484 + -2.8
554,484 + -0.2
554,484 + -2.7
554,485 - -2.1
554,485 - -1.2
554,489 + +3.7
554,490 - -0.1
554,490 - -1.1
554,490 - -0.6
554,490 - -0.2
554,545 + -0.6
554,584 + -0.1
554,752 + -1.0
554,797 + +0.8
554,797 + +0.9
554,797 + +0.4
554,798 - +1.2
554,798 - +0.5
554,798 - -0.5
554,860 - +1.6
555,024 + HGI48_RS02570 0.19 -0.2
555,024 + -1.4
555,025 - HGI48_RS02570 0.20 +0.8
555,054 - HGI48_RS02570 0.22 +0.3
555,065 - HGI48_RS02570 0.23 -0.6
555,065 - HGI48_RS02570 0.23 +0.4
555,065 - HGI48_RS02570 0.23 -2.0
555,190 + HGI48_RS02570 0.34 +0.2
555,191 - HGI48_RS02570 0.34 -0.6
555,237 + -1.0
555,238 - HGI48_RS02570 0.38 +0.0
555,238 - HGI48_RS02570 0.38 -1.8
555,238 - HGI48_RS02570 0.38 -1.2
555,307 + +0.4
555,307 + -0.2
555,308 - HGI48_RS02570 0.44 -0.6
555,328 + HGI48_RS02570 0.46 -1.0
555,328 + HGI48_RS02570 0.46 -0.5
555,328 + HGI48_RS02570 0.46 +1.1
555,328 + HGI48_RS02570 0.46 +0.5
555,329 - HGI48_RS02570 0.46 -0.8
555,329 - HGI48_RS02570 0.46 +2.1
555,329 - HGI48_RS02570 0.46 +1.0
555,329 - HGI48_RS02570 0.46 -0.5
555,329 - HGI48_RS02570 0.46 +0.0
555,330 + HGI48_RS02570 0.46 -0.1
555,330 + -1.2
555,330 + HGI48_RS02570 0.46 -0.5
555,330 + HGI48_RS02570 0.46 -1.2
555,331 - HGI48_RS02570 0.46 +0.1
555,331 - -1.2
555,331 - HGI48_RS02570 0.46 -1.6
555,331 - HGI48_RS02570 0.46 -0.6
555,331 - HGI48_RS02570 0.46 -0.2
555,453 + HGI48_RS02570 0.57 -1.3
555,453 + HGI48_RS02570 0.57 +3.0
555,475 + HGI48_RS02570 0.59 +0.3
555,475 + HGI48_RS02570 0.59 -0.1
555,484 - -1.0
555,565 + HGI48_RS02570 0.66 -1.4
555,566 - -0.6
555,566 - HGI48_RS02570 0.66 +1.1
555,566 - HGI48_RS02570 0.66 -0.8
555,730 + HGI48_RS02570 0.81 -0.9
555,731 - HGI48_RS02570 0.81 -0.0
555,731 - HGI48_RS02570 0.81 +0.6
555,738 + HGI48_RS02570 0.81 +0.2
555,745 + HGI48_RS02570 0.82 -0.6
555,746 - HGI48_RS02570 0.82 +0.2
555,746 - HGI48_RS02570 0.82 -1.0
555,746 - +0.6
555,746 - HGI48_RS02570 0.82 +0.1
555,854 + -1.0
555,862 - -0.8
555,862 - -0.6
555,891 + +1.7
555,979 + -0.6
555,979 + +0.4
555,986 + -1.6
555,987 - +1.0
556,069 + -1.6
556,182 + -0.1
556,183 - +0.1
556,417 + HGI48_RS02575 0.18 +2.5
556,417 + HGI48_RS02575 0.18 +0.5
556,417 + HGI48_RS02575 0.18 +0.7
556,418 - HGI48_RS02575 0.18 +1.0
556,418 - HGI48_RS02575 0.18 -0.3
556,418 - -2.0
556,445 + HGI48_RS02575 0.19 -2.2
556,477 + HGI48_RS02575 0.20 -0.2
556,477 + HGI48_RS02575 0.20 -1.6
556,478 - HGI48_RS02575 0.20 -2.1
556,683 - HGI48_RS02575 0.29 +1.8

Or see this region's nucleotide sequence