Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21625

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,824,919	+				+0.0
4,824,919	+				+1.7
4,824,919	+				-0.5
4,824,919	+				+0.2
4,824,920	-				-0.7
4,824,920	-				+0.3
4,824,920	-				-0.5
4,824,929	-				+0.3
4,824,967	-				-1.6
4,825,001	+				-0.1
4,825,001	+				+0.2
4,825,001	+				-1.7
4,825,001	+				-0.5
4,825,002	-				+0.3
4,825,002	-				+0.1
4,825,005	+				-1.0
4,825,005	+				+2.0
4,825,018	-				-0.2
4,825,018	-				-2.0
4,825,018	-				-0.9
4,825,018	-				-1.7
4,825,018	-				-1.7
4,825,021	-				+1.3
4,825,021	-				+1.7
4,825,030	-				-3.0
4,825,043	+				-1.6
4,825,043	+				+0.8
4,825,043	+				+0.8
4,825,043	+				-1.0
4,825,043	+				+1.3
4,825,044	-				-0.2
4,825,044	-				-1.1
4,825,044	-				+1.8
4,825,044	-				-1.0
4,825,044	-				+0.3
4,825,044	-				-1.2
4,825,044	-				+0.6
4,825,048	-				-0.7
4,825,048	-				-0.8
4,825,048	-				-1.7
4,825,048	-				-1.5
4,825,048	-				-2.0
4,825,058	+				+0.3
4,825,117	-				-2.0
4,825,183	+				-1.4
4,825,183	+				+0.2
4,825,185	+				-0.2
4,825,185	+				-0.1
4,825,185	+				+0.3
4,825,185	+				+0.0
4,825,185	+				-1.5
4,825,185	+				+1.2
4,825,185	+				+1.5
4,825,185	+				-0.2
4,825,185	+				-1.4
4,825,185	+				-0.8
4,825,185	+				+0.0
4,825,185	+				-1.1
4,825,185	+				+0.5
4,825,185	+				-1.2
4,825,186	-				+0.6
4,825,186	-				-0.3
4,825,186	-				-0.1
4,825,186	-				+0.6
4,825,186	-				+0.3
4,825,206	+				-1.7
4,825,207	-				-1.0
4,825,241	+				+2.7
4,825,254	+				-0.2
4,825,257	+				+1.7
4,825,258	-				-0.1
4,825,274	-				-1.1
4,825,284	+				-0.5
4,825,352	-				+0.0
4,825,366	+				-2.1
4,825,366	+				-1.0
4,825,366	+				+0.3
4,825,367	-				+0.9
4,825,367	-				-0.7
4,825,376	+				+0.1
4,825,384	+				-1.7
4,825,384	+				+2.0
4,825,385	-				-1.0
4,825,385	-				+0.3
4,825,385	-				-1.5
4,825,388	+				-0.2
4,825,389	-				-2.2
4,825,389	-				-0.9
4,825,389	-				+1.3
4,825,389	-				-1.2
4,825,389	-				+0.9
4,825,402	+				+3.1
4,825,402	+				-0.1
4,825,447	+				-1.7
4,825,448	-				+0.5
4,825,536	-				+0.5
4,825,610	+				+1.0
4,825,650	+				+0.3
4,825,665	+				-0.0
4,825,666	-				-0.8
4,825,669	-				+0.5
4,825,725	+				+1.3
4,825,726	-				-2.2
4,825,726	-				-2.2
4,825,737	+				-1.1
4,825,737	+				-1.3
4,825,737	+				-1.0
4,825,737	+				-0.3
4,825,738	-				-1.1
4,825,738	-				-2.7
4,825,738	-				-1.2
4,825,738	-				-1.0
4,825,740	+				+0.3
4,825,741	-				-0.6
4,825,741	-				-0.6
4,825,749	+				+1.0
4,825,749	+				+1.2
4,825,761	+				+0.8
4,825,761	+				+1.6
4,825,761	+				+0.0
4,825,762	-				+0.8
4,825,762	-				-0.5
4,825,765	+				-0.4
4,825,765	+				-1.2
4,825,766	-				-0.5
4,825,766	-				-0.2
4,825,781	+				-1.0
4,825,782	-				-0.5
4,825,782	-				-2.2
4,825,803	+				-0.5
4,825,803	+				+0.0
4,825,803	+				+0.1
4,825,803	+				-1.2
4,825,803	+				-1.5
4,825,804	-				-1.7
4,825,804	-				-1.5
4,825,804	-				-2.1
4,825,804	-				-3.1
4,825,808	-				-1.5
4,825,845	+				+1.7
4,825,881	+				+0.1
4,825,881	+				-1.0
4,825,882	-				+0.3
4,825,894	-				-0.7
4,825,928	+				+1.2
4,825,929	-				-1.1
4,825,929	-				+0.0
4,826,014	-				+0.7
4,826,229	+		HGI48_RS21625	0.27	+1.3
4,826,240	+				-2.0
4,826,280	+		HGI48_RS21625	0.32	+0.0
4,826,281	-		HGI48_RS21625	0.32	+0.1
4,826,281	-		HGI48_RS21625	0.32	-1.8
4,826,286	+				+0.5
4,826,286	+		HGI48_RS21625	0.32	-3.2
4,826,287	-		HGI48_RS21625	0.33	-1.1
4,826,287	-		HGI48_RS21625	0.33	-1.3
4,826,287	-		HGI48_RS21625	0.33	+1.8
4,826,287	-		HGI48_RS21625	0.33	-0.1
4,826,322	+		HGI48_RS21625	0.36	-0.8
4,826,323	-		HGI48_RS21625	0.36	+0.0
4,826,331	+		HGI48_RS21625	0.36	-1.2
4,826,332	-		HGI48_RS21625	0.36	-0.7
4,826,358	+		HGI48_RS21625	0.39	-0.7
4,826,398	+		HGI48_RS21625	0.42	+0.1
4,826,398	+		HGI48_RS21625	0.42	-1.2
4,826,399	-		HGI48_RS21625	0.42	-0.4
4,826,399	-		HGI48_RS21625	0.42	-1.1
4,826,399	-		HGI48_RS21625	0.42	+1.8
4,826,399	-		HGI48_RS21625	0.42	-0.8
4,826,399	-		HGI48_RS21625	0.42	-1.2
4,826,399	-		HGI48_RS21625	0.42	+0.5
4,826,399	-		HGI48_RS21625	0.42	+0.6
4,826,402	-		HGI48_RS21625	0.43	-0.9
4,826,621	-		HGI48_RS21625	0.62	-0.7
4,826,621	-		HGI48_RS21625	0.62	-1.5
4,826,713	+		HGI48_RS21625	0.70	-1.0
4,826,713	+		HGI48_RS21625	0.70	+0.9
4,826,713	+				-1.5
4,826,714	-				+0.9
4,826,793	+		HGI48_RS21625	0.77	-2.0
4,826,794	-		HGI48_RS21625	0.77	+0.2
4,826,898	+				-0.2
4,826,908	+		HGI48_RS21625	0.87	-0.1
4,826,908	+				+1.0
4,826,908	+		HGI48_RS21625	0.87	+0.0
4,826,909	-		HGI48_RS21625	0.87	+0.3
4,826,909	-				+1.7
4,826,909	-				-1.2
4,826,967	+				-0.6
4,826,994	+				-0.8
4,827,062	-				-0.5
4,827,062	-				-2.7
4,827,102	-				-0.6
4,827,198	+		HGI48_RS21630	0.14	-1.3
4,827,305	+		HGI48_RS21630	0.25	-0.7
4,827,305	+		HGI48_RS21630	0.25	+1.3
4,827,305	+		HGI48_RS21630	0.25	-1.3
4,827,306	-		HGI48_RS21630	0.25	-1.0
4,827,309	+		HGI48_RS21630	0.25	-0.2
4,827,309	+		HGI48_RS21630	0.25	-0.7
4,827,310	-		HGI48_RS21630	0.25	+1.6
4,827,310	-		HGI48_RS21630	0.25	-0.1
4,827,385	+				-2.0
4,827,386	-		HGI48_RS21630	0.33	-1.7
4,827,438	+		HGI48_RS21630	0.38	-0.7
4,827,439	-		HGI48_RS21630	0.38	+0.3
4,827,439	-		HGI48_RS21630	0.38	-0.6
4,827,553	-				+0.0
4,827,560	+		HGI48_RS21630	0.50	-1.1
4,827,560	+				-1.2
4,827,561	-		HGI48_RS21630	0.50	-1.8
4,827,561	-		HGI48_RS21630	0.50	-1.2
4,827,561	-		HGI48_RS21630	0.50	-1.8
4,827,561	-		HGI48_RS21630	0.50	-3.0
4,827,561	-		HGI48_RS21630	0.50	-1.2
4,827,561	-		HGI48_RS21630	0.50	-1.7
4,827,561	-		HGI48_RS21630	0.50	-0.2
4,827,584	+		HGI48_RS21630	0.52	-1.2
4,827,584	+				-1.2
4,827,585	-		HGI48_RS21630	0.53	-1.7
4,827,585	-		HGI48_RS21630	0.53	-0.7
4,827,585	-				-1.5
4,827,585	-		HGI48_RS21630	0.53	-1.5
4,827,626	+		HGI48_RS21630	0.57	+0.2
4,827,627	-		HGI48_RS21630	0.57	+0.8
4,827,644	+		HGI48_RS21630	0.58	-2.8
4,827,645	-		HGI48_RS21630	0.59	-0.6
4,827,671	+		HGI48_RS21630	0.61	-0.2
4,827,672	-		HGI48_RS21630	0.61	-0.4
4,827,711	+		HGI48_RS21630	0.65	+0.6
4,827,741	+		HGI48_RS21630	0.68	+0.5
4,827,741	+		HGI48_RS21630	0.68	-0.7
4,827,957	+		HGI48_RS21630	0.90	-0.2
4,827,957	+		HGI48_RS21630	0.90	-2.6
4,827,957	+				-2.0
4,827,957	+		HGI48_RS21630	0.90	-0.4
4,827,957	+		HGI48_RS21630	0.90	-0.2
4,827,958	-		HGI48_RS21630	0.90	-0.7
4,827,958	-		HGI48_RS21630	0.90	+1.1
4,827,958	-				-1.7
4,827,958	-		HGI48_RS21630	0.90	-0.7
4,827,959	+		HGI48_RS21630	0.90	-2.1
4,827,960	-		HGI48_RS21630	0.90	+0.3
4,827,960	-		HGI48_RS21630	0.90	+0.3
4,827,960	-		HGI48_RS21630	0.90	-1.5
4,827,960	-				-0.5
4,827,960	-		HGI48_RS21630	0.90	+0.1
4,827,960	-		HGI48_RS21630	0.90	-2.9
4,827,973	-				+0.9
4,827,999	+				-1.8
4,828,005	-				-1.0
4,828,013	+				-1.7
4,828,013	+				+0.0
4,828,013	+				-0.9
4,828,014	-				+0.3
4,828,014	-				-1.5
4,828,014	-				-1.0