Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18455

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,144,155	+				-1.3
4,144,156	-				-2.4
4,144,156	-				-2.5
4,144,285	+				+0.5
4,144,285	+				-0.1
4,144,286	-				-0.1
4,144,286	-				+0.2
4,144,286	-				+0.2
4,144,336	+				-0.1
4,144,336	+				-0.1
4,144,336	+				-1.0
4,144,337	-				-0.1
4,144,337	-				-1.4
4,144,337	-				+0.2
4,144,403	-				-0.3
4,144,559	+		HGI48_RS18455	0.10	-2.0
4,144,559	+		HGI48_RS18455	0.10	-0.6
4,144,559	+		HGI48_RS18455	0.10	-0.3
4,144,691	+		HGI48_RS18455	0.21	-0.3
4,144,691	+		HGI48_RS18455	0.21	-1.6
4,144,691	+		HGI48_RS18455	0.21	+0.4
4,144,691	+		HGI48_RS18455	0.21	+0.6
4,144,691	+				+1.6
4,144,692	-				-0.4
4,144,692	-		HGI48_RS18455	0.21	-0.6
4,144,692	-		HGI48_RS18455	0.21	-0.7
4,144,692	-				+0.7
4,144,692	-		HGI48_RS18455	0.21	-2.1
4,144,695	+		HGI48_RS18455	0.22	-2.1
4,144,695	+		HGI48_RS18455	0.22	+0.2
4,144,707	+				-2.0
4,144,707	+		HGI48_RS18455	0.23	+0.9
4,144,707	+		HGI48_RS18455	0.23	-0.2
4,144,707	+		HGI48_RS18455	0.23	-0.6
4,144,730	+		HGI48_RS18455	0.24	+0.2
4,144,731	-		HGI48_RS18455	0.25	-1.6
4,144,731	-		HGI48_RS18455	0.25	+0.1
4,144,769	+		HGI48_RS18455	0.28	-2.5
4,144,769	+		HGI48_RS18455	0.28	+1.2
4,144,769	+		HGI48_RS18455	0.28	+1.9
4,144,769	+		HGI48_RS18455	0.28	+0.2
4,144,769	+		HGI48_RS18455	0.28	-1.6
4,144,769	+		HGI48_RS18455	0.28	-0.3
4,144,769	+		HGI48_RS18455	0.28	+0.3
4,144,770	-		HGI48_RS18455	0.28	+0.9
4,144,770	-		HGI48_RS18455	0.28	-1.4
4,144,770	-		HGI48_RS18455	0.28	-1.0
4,144,799	-		HGI48_RS18455	0.30	-1.4
4,144,865	+		HGI48_RS18455	0.36	+0.9
4,144,865	+		HGI48_RS18455	0.36	-0.3
4,144,865	+		HGI48_RS18455	0.36	-0.4
4,144,865	+		HGI48_RS18455	0.36	+0.0
4,144,865	+		HGI48_RS18455	0.36	-0.2
4,144,865	+		HGI48_RS18455	0.36	+0.1
4,144,865	+		HGI48_RS18455	0.36	-1.0
4,144,866	-		HGI48_RS18455	0.36	-0.2
4,144,866	-		HGI48_RS18455	0.36	-1.1
4,144,866	-		HGI48_RS18455	0.36	-0.6
4,144,866	-		HGI48_RS18455	0.36	-0.6
4,144,866	-		HGI48_RS18455	0.36	+0.9
4,144,866	-		HGI48_RS18455	0.36	+1.2
4,144,934	+		HGI48_RS18455	0.42	-1.8
4,144,935	-		HGI48_RS18455	0.42	-0.7
4,144,935	-		HGI48_RS18455	0.42	+0.2
4,144,935	-				-0.1
4,144,935	-		HGI48_RS18455	0.42	+0.5
4,144,935	-		HGI48_RS18455	0.42	-0.8
4,144,976	+		HGI48_RS18455	0.45	-0.4
4,144,976	+		HGI48_RS18455	0.45	+0.2
4,144,976	+		HGI48_RS18455	0.45	-1.6
4,144,976	+		HGI48_RS18455	0.45	-0.9
4,144,976	+		HGI48_RS18455	0.45	-0.5
4,144,976	+		HGI48_RS18455	0.45	-0.6
4,144,977	-		HGI48_RS18455	0.45	-1.6
4,144,977	-		HGI48_RS18455	0.45	+0.2
4,145,098	+		HGI48_RS18455	0.55	+0.2
4,145,099	-		HGI48_RS18455	0.55	+0.3
4,145,114	+		HGI48_RS18455	0.57	-0.1
4,145,114	+		HGI48_RS18455	0.57	-2.0
4,145,135	+		HGI48_RS18455	0.58	+1.4
4,145,135	+		HGI48_RS18455	0.58	+1.8
4,145,135	+		HGI48_RS18455	0.58	+2.8
4,145,135	+		HGI48_RS18455	0.58	+3.5
4,145,136	-		HGI48_RS18455	0.58	-1.6
4,145,136	-		HGI48_RS18455	0.58	+0.2
4,145,136	-		HGI48_RS18455	0.58	+0.4
4,145,145	-		HGI48_RS18455	0.59	+0.3
4,145,259	-				-1.4
4,145,269	-		HGI48_RS18455	0.70	-0.4
4,145,295	+		HGI48_RS18455	0.72	-0.8
4,145,320	-		HGI48_RS18455	0.74	-0.3
4,145,325	+		HGI48_RS18455	0.74	+0.6
4,145,325	+		HGI48_RS18455	0.74	-1.1
4,145,325	+		HGI48_RS18455	0.74	-0.1
4,145,325	+		HGI48_RS18455	0.74	+0.6
4,145,325	+		HGI48_RS18455	0.74	+0.9
4,145,325	+		HGI48_RS18455	0.74	-0.2
4,145,326	-		HGI48_RS18455	0.74	-0.7
4,145,326	-		HGI48_RS18455	0.74	+0.8
4,145,326	-		HGI48_RS18455	0.74	-0.8
4,145,326	-		HGI48_RS18455	0.74	+0.6
4,145,326	-		HGI48_RS18455	0.74	-0.1
4,145,326	-				-2.0
4,145,386	+		HGI48_RS18455	0.79	-1.6
4,145,386	+		HGI48_RS18455	0.79	+1.2
4,145,387	-		HGI48_RS18455	0.79	-0.8
4,145,387	-				-1.0
4,145,387	-		HGI48_RS18455	0.79	+1.9
4,145,428	-		HGI48_RS18455	0.83	-0.7
4,145,428	-				-1.1
4,145,484	+		HGI48_RS18455	0.88	+0.2
4,145,484	+		HGI48_RS18455	0.88	+0.6
4,145,484	+		HGI48_RS18455	0.88	+0.2
4,145,485	-				+0.9
4,145,490	+		HGI48_RS18455	0.88	+2.2
4,145,631	+				-0.7
4,145,631	+				+0.6
4,145,631	+				-1.1
4,145,631	+				+2.4
4,145,631	+				-1.4
4,145,631	+				+0.3
4,145,631	+				+0.6
4,145,631	+				-0.6
4,145,631	+				+0.9
4,145,632	-				+0.6
4,145,632	-				-1.8
4,145,632	-				+0.2
4,145,632	-				-0.1
4,145,632	-				-0.6
4,145,632	-				-0.6
4,145,632	-				+0.3
4,145,632	-				-1.4
4,145,632	-				+1.0
4,145,632	-				-1.4
4,145,632	-				-1.5
4,145,633	+				+0.8
4,145,633	+				+0.8
4,145,633	+				+0.0
4,145,633	+				+0.2
4,145,633	+				+0.0
4,145,634	-				-1.1
4,145,634	-				+2.4
4,145,634	-				+0.7
4,145,634	-				+0.3
4,145,634	-				+1.0
4,145,634	-				+1.8
4,145,647	+				-0.2
4,145,704	+				-0.8
4,145,716	+				+0.0
4,145,716	+				+0.9
4,145,716	+				+0.2
4,145,717	-				+1.3
4,145,717	-				-1.5
4,145,717	-				-1.1
4,145,744	+				+0.5
4,145,744	+				-2.0
4,145,745	-				+0.6
4,145,750	-				-1.1
4,145,768	+				+0.5
4,145,768	+				-0.4
4,145,769	-				-0.4
4,145,769	-				-2.9
4,145,840	+				+1.0
4,145,840	+				-0.8
4,145,860	+				+0.4
4,145,872	-				-0.3
4,145,872	-				-0.8
4,145,872	-				-1.8
4,145,889	+				+1.0
4,145,890	-				+0.3
4,145,893	+				-0.4
4,145,893	+				-2.0
4,145,893	+				-0.4
4,145,893	+				-2.0
4,145,893	+				-3.0
4,145,893	+				-0.2
4,145,893	+				+0.5
4,145,893	+				+0.2
4,145,893	+				+0.7
4,145,893	+				+1.5
4,145,893	+				-1.6
4,145,894	-				+1.2
4,145,894	-				+0.3
4,145,894	-				+0.0
4,145,894	-				-1.8
4,145,894	-				-1.1
4,145,894	-				-0.2
4,145,894	-				-1.8
4,145,894	-				+0.8
4,145,894	-				+1.3
4,145,894	-				+0.8
4,145,894	-				+1.9
4,145,901	+				+0.7
4,145,901	+				+1.0
4,145,901	+				+1.0
4,145,902	-				+0.4
4,145,902	-				+1.8
4,145,902	-				-1.1
4,146,015	+				-0.6
4,146,015	+				-0.0
4,146,015	+				+0.1
4,146,015	+				-2.4
4,146,015	+				+0.6
4,146,016	-				+1.2
4,146,016	-				+0.2
4,146,016	-				+0.9
4,146,016	-				+0.6
4,146,016	-				-0.5
4,146,016	-				-0.9
4,146,100	+		HGI48_RS18460	0.11	-1.4
4,146,101	-		HGI48_RS18460	0.12	+1.2
4,146,101	-		HGI48_RS18460	0.12	+1.0
4,146,121	+		HGI48_RS18460	0.13	-0.4
4,146,122	-		HGI48_RS18460	0.13	+0.5
4,146,148	-		HGI48_RS18460	0.14	+2.8
4,146,196	-		HGI48_RS18460	0.16	+1.4
4,146,240	+		HGI48_RS18460	0.19	+1.6
4,146,240	+		HGI48_RS18460	0.19	+0.0
4,146,240	+		HGI48_RS18460	0.19	-0.8
4,146,240	+		HGI48_RS18460	0.19	-2.1
4,146,240	+		HGI48_RS18460	0.19	+0.7
4,146,240	+		HGI48_RS18460	0.19	-0.3
4,146,240	+		HGI48_RS18460	0.19	+1.4
4,146,241	-				-1.8
4,146,241	-		HGI48_RS18460	0.19	+0.8
4,146,241	-		HGI48_RS18460	0.19	+0.9
4,146,241	-		HGI48_RS18460	0.19	-0.4
4,146,241	-		HGI48_RS18460	0.19	+1.2
4,146,241	-		HGI48_RS18460	0.19	-2.1
4,146,241	-				+0.4
4,146,271	+		HGI48_RS18460	0.20	+0.0
4,146,271	+		HGI48_RS18460	0.20	+0.1
4,146,271	+		HGI48_RS18460	0.20	-0.4
4,146,271	+		HGI48_RS18460	0.20	+1.2
4,146,271	+		HGI48_RS18460	0.20	+0.6
4,146,272	-		HGI48_RS18460	0.20	-0.9
4,146,272	-		HGI48_RS18460	0.20	+1.2
4,146,393	+		HGI48_RS18460	0.26	-1.7
4,146,393	+		HGI48_RS18460	0.26	+3.5
4,146,393	+		HGI48_RS18460	0.26	+1.4
4,146,393	+		HGI48_RS18460	0.26	+0.4
4,146,394	-		HGI48_RS18460	0.26	-0.0
4,146,394	-		HGI48_RS18460	0.26	+0.3
4,146,394	-		HGI48_RS18460	0.26	-0.4
4,146,394	-		HGI48_RS18460	0.26	-0.8
4,146,394	-		HGI48_RS18460	0.26	-0.1
4,146,394	-		HGI48_RS18460	0.26	+0.6
4,146,495	+		HGI48_RS18460	0.31	+1.0
4,146,495	+		HGI48_RS18460	0.31	+0.6
4,146,495	+		HGI48_RS18460	0.31	+0.9
4,146,495	+		HGI48_RS18460	0.31	+1.6
4,146,496	-		HGI48_RS18460	0.32	-3.2
4,146,546	+				+1.9
4,146,553	+		HGI48_RS18460	0.34	-2.1