Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17435

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,902,667	+		HGI48_RS17425	0.52	+0.2
3,902,667	+		HGI48_RS17425	0.52	+0.3
3,902,667	+		HGI48_RS17425	0.52	+0.2
3,902,667	+		HGI48_RS17425	0.52	+0.5
3,902,667	+		HGI48_RS17425	0.52	-1.6
3,902,668	-		HGI48_RS17425	0.52	-0.3
3,902,668	-		HGI48_RS17425	0.52	+0.2
3,902,713	-		HGI48_RS17425	0.58	-0.5
3,902,813	+		HGI48_RS17425	0.71	-1.7
3,902,813	+		HGI48_RS17425	0.71	+0.9
3,902,813	+		HGI48_RS17425	0.71	+0.4
3,902,813	+		HGI48_RS17425	0.71	-1.7
3,902,813	+		HGI48_RS17425	0.71	+1.1
3,902,814	-		HGI48_RS17425	0.71	-0.3
3,902,814	-		HGI48_RS17425	0.71	+0.5
3,902,814	-		HGI48_RS17425	0.71	-0.1
3,902,814	-		HGI48_RS17425	0.71	+1.1
3,902,814	-		HGI48_RS17425	0.71	+0.1
3,902,814	-		HGI48_RS17425	0.71	-1.8
3,902,814	-				+2.3
3,902,814	-		HGI48_RS17425	0.71	-0.1
3,902,900	+		HGI48_RS17425	0.83	-0.3
3,902,901	-		HGI48_RS17425	0.83	+1.2
3,902,914	-		HGI48_RS17425	0.84	+0.4
3,902,986	+				+1.8
3,902,986	+				-1.5
3,902,986	+				+0.7
3,902,986	+				+0.8
3,902,986	+				+0.1
3,902,986	+				+0.1
3,902,987	-				+1.4
3,902,987	-				-2.5
3,902,987	-				-0.3
3,902,996	+				-0.8
3,902,996	+				+0.7
3,902,996	+				+0.1
3,902,997	-				+1.1
3,903,013	+				-2.9
3,903,013	+				+0.2
3,903,014	-				+0.4
3,903,014	-				+1.3
3,903,014	-				-0.5
3,903,164	-				-1.9
3,903,202	-				-0.9
3,903,431	+				-0.9
3,903,432	-		HGI48_RS17430	0.68	-0.7
3,903,432	-		HGI48_RS17430	0.68	+0.3
3,903,441	-		HGI48_RS17430	0.70	+0.7
3,903,520	+				-0.6
3,903,520	+				-1.0
3,903,545	+				-0.1
3,903,545	+				-1.5
3,903,545	+				-1.5
3,903,545	+				+2.7
3,903,545	+				+1.2
3,903,545	+				-0.5
3,903,546	-				-0.9
3,903,546	-				-0.5
3,903,549	+				-0.4
3,903,549	+				-1.2
3,903,549	+				-0.5
3,903,549	+				-0.2
3,903,549	+				+0.3
3,903,549	+				-1.9
3,903,549	+				-2.1
3,903,549	+				+0.2
3,903,550	-				-1.9
3,903,725	+		HGI48_RS17435	0.13	-0.0
3,903,725	+		HGI48_RS17435	0.13	-0.2
3,903,726	-		HGI48_RS17435	0.13	+0.9
3,903,726	-		HGI48_RS17435	0.13	+0.1
3,903,726	-				-1.2
3,903,726	-		HGI48_RS17435	0.13	+0.8
3,903,770	+		HGI48_RS17435	0.16	-0.7
3,903,801	-		HGI48_RS17435	0.18	+0.9
3,903,894	-		HGI48_RS17435	0.24	+0.5
3,903,894	-		HGI48_RS17435	0.24	+0.3
3,903,923	+				+0.4
3,903,924	-		HGI48_RS17435	0.26	-1.5
3,903,960	+		HGI48_RS17435	0.29	-0.0
3,903,960	+		HGI48_RS17435	0.29	+1.1
3,903,960	+		HGI48_RS17435	0.29	-1.0
3,903,961	-		HGI48_RS17435	0.29	-0.6
3,903,961	-		HGI48_RS17435	0.29	-0.4
3,903,961	-		HGI48_RS17435	0.29	-0.5
3,903,995	+		HGI48_RS17435	0.31	-0.2
3,903,995	+		HGI48_RS17435	0.31	-0.9
3,903,995	+		HGI48_RS17435	0.31	-2.5
3,903,995	+		HGI48_RS17435	0.31	-0.7
3,903,996	-		HGI48_RS17435	0.31	+0.2
3,903,996	-		HGI48_RS17435	0.31	-0.5
3,903,996	-		HGI48_RS17435	0.31	+0.2
3,903,998	+		HGI48_RS17435	0.32	+0.3
3,903,998	+		HGI48_RS17435	0.32	-1.7
3,903,998	+		HGI48_RS17435	0.32	+0.5
3,903,998	+		HGI48_RS17435	0.32	-1.3
3,903,998	+		HGI48_RS17435	0.32	+0.2
3,903,999	-		HGI48_RS17435	0.32	+0.5
3,903,999	-		HGI48_RS17435	0.32	+0.2
3,903,999	-		HGI48_RS17435	0.32	-0.5
3,903,999	-		HGI48_RS17435	0.32	+0.6
3,903,999	-				-0.2
3,903,999	-		HGI48_RS17435	0.32	-0.7
3,904,002	-		HGI48_RS17435	0.32	+2.2
3,904,067	+		HGI48_RS17435	0.36	+0.1
3,904,067	+				-0.1
3,904,095	+		HGI48_RS17435	0.38	-0.4
3,904,130	+		HGI48_RS17435	0.41	+0.1
3,904,130	+		HGI48_RS17435	0.41	-0.6
3,904,130	+		HGI48_RS17435	0.41	-0.7
3,904,130	+		HGI48_RS17435	0.41	+0.4
3,904,130	+		HGI48_RS17435	0.41	+0.3
3,904,130	+		HGI48_RS17435	0.41	+0.7
3,904,130	+				-3.0
3,904,131	-		HGI48_RS17435	0.41	+0.6
3,904,141	+		HGI48_RS17435	0.42	+0.3
3,904,141	+		HGI48_RS17435	0.42	-1.2
3,904,141	+		HGI48_RS17435	0.42	+1.3
3,904,141	+		HGI48_RS17435	0.42	-1.1
3,904,141	+		HGI48_RS17435	0.42	-2.9
3,904,142	-		HGI48_RS17435	0.42	-1.7
3,904,142	-		HGI48_RS17435	0.42	-0.5
3,904,142	-		HGI48_RS17435	0.42	-0.8
3,904,142	-		HGI48_RS17435	0.42	+1.0
3,904,220	+		HGI48_RS17435	0.47	-0.8
3,904,220	+		HGI48_RS17435	0.47	-0.1
3,904,220	+		HGI48_RS17435	0.47	+0.4
3,904,232	+		HGI48_RS17435	0.48	-0.1
3,904,232	+				-1.9
3,904,232	+				-0.5
3,904,233	-		HGI48_RS17435	0.48	+1.1
3,904,377	+		HGI48_RS17435	0.58	-0.9
3,904,529	+		HGI48_RS17435	0.69	-1.9
3,904,574	+		HGI48_RS17435	0.72	+0.5
3,904,574	+		HGI48_RS17435	0.72	+1.2
3,904,575	-		HGI48_RS17435	0.72	+0.4
3,904,575	-		HGI48_RS17435	0.72	+1.1
3,904,575	-		HGI48_RS17435	0.72	+1.4
3,904,575	-		HGI48_RS17435	0.72	-1.1
3,904,604	+				-0.1
3,904,604	+		HGI48_RS17435	0.74	+1.1
3,904,604	+		HGI48_RS17435	0.74	-0.2
3,904,605	-		HGI48_RS17435	0.74	+0.4
3,904,605	-		HGI48_RS17435	0.74	-0.5
3,904,605	-		HGI48_RS17435	0.74	+0.3
3,904,618	+		HGI48_RS17435	0.75	-0.0
3,904,618	+		HGI48_RS17435	0.75	+0.2
3,904,618	+				-1.5
3,904,618	+		HGI48_RS17435	0.75	+0.4
3,904,618	+		HGI48_RS17435	0.75	-2.2
3,904,618	+				+0.5
3,904,619	-		HGI48_RS17435	0.75	-0.9
3,904,619	-		HGI48_RS17435	0.75	-0.8
3,904,619	-		HGI48_RS17435	0.75	-1.7
3,904,619	-		HGI48_RS17435	0.75	+1.7
3,904,619	-		HGI48_RS17435	0.75	-1.5
3,904,619	-		HGI48_RS17435	0.75	+0.6
3,904,619	-		HGI48_RS17435	0.75	-0.1
3,904,619	-		HGI48_RS17435	0.75	+0.9
3,904,619	-		HGI48_RS17435	0.75	-1.2
3,904,670	+		HGI48_RS17435	0.78	-1.2
3,904,671	-		HGI48_RS17435	0.78	+0.0
3,904,671	-		HGI48_RS17435	0.78	+0.6
3,904,671	-		HGI48_RS17435	0.78	-1.9
3,904,671	-		HGI48_RS17435	0.78	+1.1
3,904,679	+		HGI48_RS17435	0.79	+1.1
3,904,680	-		HGI48_RS17435	0.79	+1.9
3,904,706	+		HGI48_RS17435	0.81	+0.6
3,904,706	+		HGI48_RS17435	0.81	+0.8
3,904,707	-		HGI48_RS17435	0.81	+1.5
3,904,707	-		HGI48_RS17435	0.81	+0.4
3,904,859	+				-1.2
3,904,859	+				+0.4
3,904,860	-				+0.8
3,904,860	-				-0.7
3,904,969	+				-0.1
3,904,970	-				-1.7
3,904,970	-				+1.1
3,904,970	-				+2.1
3,904,970	-				-0.2
3,904,981	+				-0.9
3,904,994	+				+0.2
3,904,994	+				-0.9
3,904,994	+				+0.3
3,904,994	+				-1.5
3,904,994	+				+1.1
3,904,995	-				-0.6
3,904,995	-				-0.9
3,904,995	-				-0.3
3,905,004	-				-1.7
3,905,020	+				+0.5
3,905,020	+				-1.1
3,905,021	-				-2.4
3,905,021	-				-0.7
3,905,050	+				-0.7
3,905,051	-				-0.6
3,905,131	-				+0.1
3,905,280	+		HGI48_RS17440	0.18	-1.3
3,905,434	+		HGI48_RS17440	0.30	-0.2
3,905,496	+				-1.7
3,905,496	+		HGI48_RS17440	0.34	-0.7
3,905,496	+		HGI48_RS17440	0.34	-1.9
3,905,496	+		HGI48_RS17440	0.34	-1.5
3,905,496	+		HGI48_RS17440	0.34	-0.9
3,905,496	+		HGI48_RS17440	0.34	+0.2
3,905,496	+		HGI48_RS17440	0.34	+1.2
3,905,497	-		HGI48_RS17440	0.34	+0.3
3,905,497	-		HGI48_RS17440	0.34	+0.3
3,905,497	-		HGI48_RS17440	0.34	+0.5
3,905,497	-		HGI48_RS17440	0.34	-0.3
3,905,497	-		HGI48_RS17440	0.34	+1.1
3,905,565	-		HGI48_RS17440	0.39	-0.9
3,905,721	+		HGI48_RS17440	0.51	-0.4
3,905,721	+		HGI48_RS17440	0.51	+0.8
3,905,721	+		HGI48_RS17440	0.51	-0.5
3,905,721	+		HGI48_RS17440	0.51	+0.1
3,905,722	-		HGI48_RS17440	0.51	+0.1
3,905,722	-		HGI48_RS17440	0.51	-2.2
3,905,722	-		HGI48_RS17440	0.51	+1.5
3,905,722	-		HGI48_RS17440	0.51	-0.5
3,905,722	-		HGI48_RS17440	0.51	-2.9
3,905,722	-				-1.7
3,905,733	+		HGI48_RS17440	0.52	-0.7
3,905,733	+		HGI48_RS17440	0.52	-1.2
3,905,733	+		HGI48_RS17440	0.52	-1.7
3,905,739	+		HGI48_RS17440	0.52	-1.9
3,905,739	+		HGI48_RS17440	0.52	-0.2
3,905,740	-		HGI48_RS17440	0.52	+0.5
3,905,764	+		HGI48_RS17440	0.54	-0.9
3,905,896	-		HGI48_RS17440	0.64	-0.5