Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15630

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS15625 and HGI48_RS15630 are separated by 77 nucleotidesHGI48_RS15630 and HGI48_RS15635 are separated by 97 nucleotidesHGI48_RS15635 and HGI48_RS15640 are separated by 25 nucleotidesHGI48_RS15640 and HGI48_RS15645 are separated by 24 nucleotides HGI48_RS15625: HGI48_RS15625 - Fe-S protein assembly chaperone HscA, at 3,511,533 to 3,513,383 _RS15625 HGI48_RS15630: HGI48_RS15630 - co-chaperone HscB, at 3,513,461 to 3,513,979 _RS15630 HGI48_RS15635: HGI48_RS15635 - iron-sulfur cluster assembly protein IscA, at 3,514,077 to 3,514,400 _RS15635 HGI48_RS15640: HGI48_RS15640 - Fe-S cluster assembly scaffold IscU, at 3,514,426 to 3,514,809 _RS15640 HGI48_RS15645: HGI48_RS15645 - cysteine desulfurase, at 3,514,834 to 3,516,048 _RS15645 Position (kb) 3513 3514Strain fitness (log2 ratio) -3 -2 -1 0 1at 3513.529 kb on + strand, within HGI48_RS15630at 3513.769 kb on + strand, within HGI48_RS15630at 3513.770 kb on - strand, within HGI48_RS15630at 3513.772 kb on - strand, within HGI48_RS15630at 3513.942 kb on + strandat 3514.024 kb on + strandat 3514.086 kb on - strandat 3514.190 kb on - strand, within HGI48_RS15635at 3514.401 kb on - strandat 3514.813 kb on - strandat 3514.836 kb on - strandat 3514.836 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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3,513,529 + HGI48_RS15630 0.13 -3.5
3,513,769 + HGI48_RS15630 0.59 -0.9
3,513,770 - HGI48_RS15630 0.60 -1.6
3,513,772 - HGI48_RS15630 0.60 -1.8
3,513,942 + +0.1
3,514,024 + -1.9
3,514,086 - -1.0
3,514,190 - HGI48_RS15635 0.35 -1.4
3,514,401 - -2.4
3,514,813 - -2.0
3,514,836 - -0.9
3,514,836 - +0.2

Or see this region's nucleotide sequence