Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS12860

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
2,805,909	+				+0.1
2,805,910	-				+0.2
2,805,985	+				-1.6
2,805,985	+				-0.2
2,806,028	+		HGI48_RS12850	0.10	-0.5
2,806,065	-				+1.2
2,806,121	+		HGI48_RS12850	0.34	-0.8
2,806,122	-		HGI48_RS12850	0.34	+0.3
2,806,122	-		HGI48_RS12850	0.34	-3.3
2,806,122	-		HGI48_RS12850	0.34	-2.2
2,806,122	-		HGI48_RS12850	0.34	-0.9
2,806,269	-		HGI48_RS12850	0.70	-1.9
2,806,269	-				-2.1
2,806,271	+		HGI48_RS12850	0.71	-1.2
2,806,271	+		HGI48_RS12850	0.71	-3.1
2,806,272	-		HGI48_RS12850	0.71	-0.8
2,806,272	-		HGI48_RS12850	0.71	-1.4
2,806,360	+				+0.5
2,806,361	-				-1.1
2,806,537	-				+0.3
2,806,537	-		HGI48_RS12855	0.17	-0.4
2,806,867	+				-0.8
2,806,867	+				-0.4
2,806,867	+				-1.4
2,806,867	+				+0.8
2,806,867	+				-0.8
2,806,867	+				+0.3
2,806,867	+				+0.3
2,806,867	+				-2.1
2,806,868	-				-0.2
2,806,868	-				-2.2
2,806,872	+				-1.8
2,806,873	-				-0.3
2,806,940	+				+0.2
2,806,940	+				-2.2
2,806,966	+				-1.2
2,807,029	+				-2.3
2,807,029	+				+0.4
2,807,029	+				-2.4
2,807,029	+				-0.8
2,807,029	+				-1.1
2,807,029	+				-2.9
2,807,029	+				-1.2
2,807,029	+				-1.6
2,807,029	+				-2.4
2,807,029	+				-1.9
2,807,029	+				-0.6
2,807,029	+				+0.3
2,807,030	-				+0.8
2,807,030	-				-1.2
2,807,030	-				-1.6
2,807,030	-				-1.0
2,807,030	-				-1.1
2,807,030	-				-0.5
2,807,030	-				-1.8
2,807,030	-				+0.5
2,807,030	-				-0.6
2,807,030	-				-2.2
2,807,183	+				-0.2
2,807,184	-				-0.8
2,807,200	+				-2.4
2,807,200	+		HGI48_RS12860	0.10	-0.7
2,807,321	-		HGI48_RS12860	0.14	-0.2
2,807,548	+		HGI48_RS12860	0.22	-1.2
2,807,548	+		HGI48_RS12860	0.22	-1.8
2,807,549	-		HGI48_RS12860	0.22	-1.6
2,807,551	+		HGI48_RS12860	0.22	-1.2
2,807,551	+		HGI48_RS12860	0.22	-1.8
2,807,552	-		HGI48_RS12860	0.22	-1.1
2,807,791	+		HGI48_RS12860	0.30	-0.0
2,807,815	+				-1.6
2,807,815	+		HGI48_RS12860	0.30	-1.4
2,807,815	+		HGI48_RS12860	0.30	+1.2
2,807,815	+		HGI48_RS12860	0.30	-2.0
2,807,815	+		HGI48_RS12860	0.30	-2.8
2,807,849	-		HGI48_RS12860	0.31	-0.7
2,807,849	-		HGI48_RS12860	0.31	-1.6
2,807,907	-		HGI48_RS12860	0.33	-0.6
2,807,907	-				-1.6
2,807,968	+		HGI48_RS12860	0.35	-1.2
2,807,968	+		HGI48_RS12860	0.35	+0.9
2,808,137	+		HGI48_RS12860	0.41	-1.0
2,808,268	+		HGI48_RS12860	0.45	-1.2
2,808,268	+		HGI48_RS12860	0.45	+0.6
2,808,268	+		HGI48_RS12860	0.45	-0.2
2,808,268	+		HGI48_RS12860	0.45	+0.0
2,808,268	+		HGI48_RS12860	0.45	-0.7
2,808,268	+		HGI48_RS12860	0.45	-1.3
2,808,268	+		HGI48_RS12860	0.45	-1.2
2,808,269	-		HGI48_RS12860	0.45	+0.0
2,808,394	+		HGI48_RS12860	0.49	-0.2
2,808,394	+		HGI48_RS12860	0.49	-0.8
2,808,395	-		HGI48_RS12860	0.49	-1.0
2,808,395	-		HGI48_RS12860	0.49	-0.5
2,808,395	-		HGI48_RS12860	0.49	-3.0
2,808,472	+		HGI48_RS12860	0.52	-0.8
2,808,492	+		HGI48_RS12860	0.52	-0.8
2,808,492	+		HGI48_RS12860	0.52	+0.8
2,808,542	+		HGI48_RS12860	0.54	+0.5
2,808,543	-		HGI48_RS12860	0.54	-0.3
2,808,543	-		HGI48_RS12860	0.54	+1.2
2,808,543	-		HGI48_RS12860	0.54	+0.0
2,808,543	-		HGI48_RS12860	0.54	-1.4
2,808,543	-		HGI48_RS12860	0.54	-1.8
2,808,643	+		HGI48_RS12860	0.57	-0.1
2,808,643	+		HGI48_RS12860	0.57	-0.6
2,808,644	-		HGI48_RS12860	0.57	-1.1
2,808,644	-				-0.8
2,808,644	-		HGI48_RS12860	0.57	-1.6
2,808,644	-		HGI48_RS12860	0.57	-1.7
2,808,755	+		HGI48_RS12860	0.61	+0.8
2,808,756	-		HGI48_RS12860	0.61	-1.6
2,808,756	-		HGI48_RS12860	0.61	-0.8
2,808,756	-		HGI48_RS12860	0.61	-0.4
2,808,756	-		HGI48_RS12860	0.61	-0.8
2,808,756	-		HGI48_RS12860	0.61	-1.2
2,809,072	+		HGI48_RS12860	0.71	-0.6
2,809,073	-				-0.4
2,809,296	+		HGI48_RS12860	0.79	-1.2
2,809,306	+		HGI48_RS12860	0.79	-1.1
2,809,416	+		HGI48_RS12860	0.83	+0.8
2,809,416	+				-1.8
2,809,416	+		HGI48_RS12860	0.83	+0.8
2,809,417	-		HGI48_RS12860	0.83	-1.9
2,809,417	-		HGI48_RS12860	0.83	-1.5
2,809,631	-		HGI48_RS12860	0.90	-3.0
2,809,640	+		HGI48_RS12860	0.90	-2.7
2,809,641	-				-0.5
2,809,641	-				-0.8
2,809,804	+				-0.8
2,809,804	+				+1.5
2,809,805	-				-1.8
2,809,805	-				+0.5
2,809,805	-				+1.2
2,809,808	+				-0.0
2,809,808	+				-2.2
2,809,808	+				+0.8
2,809,808	+				-1.6
2,809,808	+				-0.7
2,809,808	+				-0.2
2,809,808	+				+0.2
2,809,808	+				-1.2
2,809,808	+				-1.1
2,809,809	-				-0.2
2,809,809	-				+0.0
2,809,809	-				-1.0
2,809,809	-				-1.7
2,809,809	-				-0.8
2,809,809	-				+0.8
2,809,809	-				-1.0
2,809,844	-				-1.8
2,809,947	+				-2.6
2,809,947	+				+0.8
2,809,947	+				+0.1
2,809,947	+				-1.6
2,809,947	+				-2.7
2,809,948	-				-1.0
2,809,948	-				-1.4
2,809,948	-				-0.2
2,809,948	-				-1.4
2,809,948	-				-0.2
2,809,985	+				-0.4
2,809,985	+				-0.5
2,809,990	+				-0.5
2,809,990	+				-0.6
2,809,990	+				+0.8
2,809,990	+				-2.0
2,809,990	+				-0.2
2,809,991	-				+0.1
2,809,991	-				+0.8
2,810,176	+				+1.2
2,810,177	-				+0.5
2,810,188	+				+0.2
2,810,188	+				+0.1
2,810,189	-				-0.8
2,810,203	-				-1.2
2,810,250	+				-0.4
2,810,268	+				-0.6
2,810,269	-				-0.6
2,810,276	+				-0.6
2,810,276	+				-0.3
2,810,276	+				+0.2
2,810,416	+		HGI48_RS12865	0.12	-0.8
2,810,445	+		HGI48_RS12865	0.14	-1.2
2,810,551	+		HGI48_RS12865	0.24	-1.2
2,810,726	+				-1.8
2,810,726	+		HGI48_RS12865	0.40	-1.6
2,810,726	+		HGI48_RS12865	0.40	-1.0
2,810,727	-		HGI48_RS12865	0.40	-1.5
2,810,825	+				-2.4
2,810,826	-				-0.8