Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06955

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,475,350	+		HGI48_RS06950	0.24	-0.5
1,475,350	+		HGI48_RS06950	0.24	-0.8
1,475,353	-		HGI48_RS06950	0.24	+1.1
1,475,424	+		HGI48_RS06950	0.32	+0.3
1,475,424	+		HGI48_RS06950	0.32	-0.7
1,475,424	+		HGI48_RS06950	0.32	-0.7
1,475,424	+		HGI48_RS06950	0.32	-1.1
1,475,424	+		HGI48_RS06950	0.32	+0.6
1,475,424	+		HGI48_RS06950	0.32	+0.8
1,475,424	+		HGI48_RS06950	0.32	-0.7
1,475,424	+		HGI48_RS06950	0.32	-0.9
1,475,425	-				-1.2
1,475,425	-		HGI48_RS06950	0.32	+0.4
1,475,425	-		HGI48_RS06950	0.32	+0.3
1,475,425	-		HGI48_RS06950	0.32	+0.3
1,475,425	-		HGI48_RS06950	0.32	+0.1
1,475,430	+		HGI48_RS06950	0.33	+1.2
1,475,430	+				-2.3
1,475,430	+		HGI48_RS06950	0.33	-0.7
1,475,431	-		HGI48_RS06950	0.33	+0.6
1,475,431	-		HGI48_RS06950	0.33	-2.5
1,475,650	+		HGI48_RS06950	0.57	-0.5
1,475,650	+		HGI48_RS06950	0.57	-0.3
1,475,651	-		HGI48_RS06950	0.58	-1.2
1,475,651	-		HGI48_RS06950	0.58	+0.5
1,475,765	+				-0.4
1,475,766	-		HGI48_RS06950	0.70	+0.3
1,475,818	+		HGI48_RS06950	0.76	-0.1
1,475,868	+		HGI48_RS06950	0.82	+0.8
1,475,868	+		HGI48_RS06950	0.82	-0.0
1,475,868	+		HGI48_RS06950	0.82	-0.7
1,475,868	+		HGI48_RS06950	0.82	-1.7
1,475,869	-		HGI48_RS06950	0.82	+0.8
1,475,969	-				+0.1
1,476,036	-				-1.5
1,476,038	+				-1.0
1,476,038	+				+0.0
1,476,039	-				+0.0
1,476,039	-				+0.5
1,476,039	-				-2.6
1,476,039	-				+0.8
1,476,039	-				-0.4
1,476,042	+				-1.7
1,476,042	+				+0.1
1,476,042	+				+0.8
1,476,042	+				+1.0
1,476,042	+				-1.6
1,476,042	+				-1.3
1,476,042	+				+0.4
1,476,042	+				-0.9
1,476,042	+				-0.7
1,476,042	+				-0.6
1,476,042	+				-1.3
1,476,043	-				-0.4
1,476,043	-				+0.8
1,476,043	-				-1.8
1,476,043	-				+0.3
1,476,043	-				-0.3
1,476,043	-				+0.5
1,476,043	-				-2.1
1,476,043	-				+0.8
1,476,043	-				+1.0
1,476,043	-				-0.7
1,476,043	-				+0.7
1,476,043	-				+0.0
1,476,046	+				+0.2
1,476,046	+				+0.1
1,476,046	+				-0.7
1,476,046	+				+0.4
1,476,046	+				+0.0
1,476,046	+				+0.3
1,476,046	+				+2.3
1,476,046	+				-0.7
1,476,046	+				-1.5
1,476,047	-				-0.4
1,476,047	-				-2.0
1,476,047	-				+0.3
1,476,047	-				-0.6
1,476,047	-				+1.3
1,476,047	-				-2.0
1,476,047	-				-3.0
1,476,047	-				+0.2
1,476,047	-				-0.7
1,476,047	-				+0.8
1,476,047	-				+1.6
1,476,047	-				-0.2
1,476,047	-				+1.2
1,476,047	-				-0.3
1,476,050	+				+0.1
1,476,050	+				-2.0
1,476,050	+				-0.4
1,476,050	+				+0.1
1,476,051	-				+0.1
1,476,051	-				+0.1
1,476,051	-				+1.4
1,476,054	+				-1.2
1,476,054	+				+0.0
1,476,054	+				-1.2
1,476,054	+				-2.3
1,476,054	+				+0.4
1,476,054	+				+0.3
1,476,055	-				+2.1
1,476,055	-				+0.6
1,476,055	-				-2.5
1,476,055	-				+0.4
1,476,055	-				-0.4
1,476,055	-				-1.5
1,476,055	-				+0.4
1,476,058	+				-2.2
1,476,058	+				-1.3
1,476,058	+				+0.8
1,476,058	+				+1.1
1,476,058	+				+1.2
1,476,058	+				-2.2
1,476,058	+				+0.2
1,476,058	+				+1.7
1,476,058	+				-2.3
1,476,058	+				+0.3
1,476,058	+				+0.0
1,476,059	-				-0.4
1,476,059	-				+2.4
1,476,062	+				-0.4
1,476,062	+				+0.4
1,476,062	+				-2.2
1,476,062	+				+0.6
1,476,063	-				-0.4
1,476,063	-				+1.5
1,476,063	-				-1.3
1,476,066	+				+1.4
1,476,066	+				-0.2
1,476,066	+				-0.4
1,476,066	+				+0.8
1,476,066	+				-0.2
1,476,067	-				+1.6
1,476,067	-				-0.2
1,476,067	-				-2.5
1,476,067	-				-1.2
1,476,067	-				-0.1
1,476,070	+				+1.8
1,476,070	+				-1.5
1,476,070	+				+1.5
1,476,070	+				+0.5
1,476,070	+				-0.2
1,476,070	+				-0.2
1,476,070	+				-0.4
1,476,071	-				-0.9
1,476,071	-				-0.6
1,476,071	-				+0.5
1,476,071	-				-0.7
1,476,071	-				+1.4
1,476,073	+				-0.6
1,476,115	+				+0.0
1,476,225	+				+0.4
1,476,225	+				+0.8
1,476,225	+				+0.4
1,476,228	+				-0.4
1,476,228	+				-0.3
1,476,229	-				+0.1
1,476,254	+				+0.4
1,476,254	+				+1.2
1,476,255	-				-0.8
1,476,255	-				-0.4
1,476,272	+				+1.0
1,476,273	-				+1.8
1,476,305	+				-0.2
1,476,306	-				-1.2
1,476,343	+				+0.7
1,476,344	-				-2.5
1,476,409	+				-1.9
1,476,413	-				-2.0
1,476,413	-				-2.2
1,476,440	+		HGI48_RS06955	0.11	-0.4
1,476,440	+		HGI48_RS06955	0.11	+1.1
1,476,441	-		HGI48_RS06955	0.11	-3.1
1,476,449	+		HGI48_RS06955	0.12	+0.6
1,476,450	-		HGI48_RS06955	0.12	-0.6
1,476,461	+				-2.3
1,476,462	-		HGI48_RS06955	0.13	+0.2
1,476,462	-		HGI48_RS06955	0.13	-0.0
1,476,479	+		HGI48_RS06955	0.15	-3.0
1,476,479	+		HGI48_RS06955	0.15	-0.4
1,476,506	+		HGI48_RS06955	0.18	-1.2
1,476,557	+				-1.0
1,476,561	+				-0.8
1,476,591	+		HGI48_RS06955	0.28	-1.0
1,476,591	+		HGI48_RS06955	0.28	+1.2
1,476,592	-		HGI48_RS06955	0.28	-0.1
1,476,659	+		HGI48_RS06955	0.35	+0.1
1,476,715	+		HGI48_RS06955	0.42	-0.3
1,476,716	-		HGI48_RS06955	0.42	-1.2
1,476,863	+		HGI48_RS06955	0.58	+0.8
1,476,913	-		HGI48_RS06955	0.64	-0.8
1,477,253	-				-0.2
1,477,256	-				+1.2
1,477,256	-				-3.3
1,477,276	+				-1.5
1,477,276	+				+1.8
1,477,277	-				+0.4
1,477,294	+				-1.8
1,477,294	+				+0.1
1,477,295	-				-0.5
1,477,317	+				+0.8
1,477,317	+				-2.3
1,477,317	+				-0.6
1,477,318	-				-0.8
1,477,437	+				-1.0
1,477,437	+				-0.6
1,477,461	+				-0.4
1,477,461	+				+0.8
1,477,462	-				-1.0
1,477,525	+		HGI48_RS06960	0.12	+0.2
1,477,525	+		HGI48_RS06960	0.12	+1.2
1,477,572	+		HGI48_RS06960	0.16	+1.6
1,477,572	+		HGI48_RS06960	0.16	-3.3
1,477,572	+		HGI48_RS06960	0.16	-0.0
1,477,572	+		HGI48_RS06960	0.16	+1.8
1,477,572	+		HGI48_RS06960	0.16	+1.2
1,477,573	-		HGI48_RS06960	0.16	+1.5
1,477,573	-		HGI48_RS06960	0.16	+0.8
1,477,573	-		HGI48_RS06960	0.16	-0.3
1,477,573	-		HGI48_RS06960	0.16	-2.5
1,477,573	-		HGI48_RS06960	0.16	+1.4
1,477,857	+		HGI48_RS06960	0.41	+0.4
1,477,857	+		HGI48_RS06960	0.41	+1.2
1,477,858	-		HGI48_RS06960	0.41	+0.8
1,477,858	-		HGI48_RS06960	0.41	-0.1
1,477,959	+		HGI48_RS06960	0.49	+0.2
1,477,960	-		HGI48_RS06960	0.49	+0.5
1,478,082	+				-0.6
1,478,082	+		HGI48_RS06960	0.60	+0.8
1,478,083	-		HGI48_RS06960	0.60	-1.8
1,478,083	-		HGI48_RS06960	0.60	-1.5
1,478,135	+		HGI48_RS06960	0.65	-0.3
1,478,135	+		HGI48_RS06960	0.65	+0.1
1,478,135	+		HGI48_RS06960	0.65	-0.0
1,478,136	-		HGI48_RS06960	0.65	-0.4
1,478,136	-		HGI48_RS06960	0.65	+0.4
1,478,167	-		HGI48_RS06960	0.67	-0.5
1,478,170	+		HGI48_RS06960	0.68	+0.8
1,478,170	+		HGI48_RS06960	0.68	-1.2
1,478,170	+		HGI48_RS06960	0.68	-0.6
1,478,170	+		HGI48_RS06960	0.68	+0.8
1,478,170	+		HGI48_RS06960	0.68	-0.5
1,478,170	+				-0.4
1,478,170	+		HGI48_RS06960	0.68	+1.2
1,478,170	+		HGI48_RS06960	0.68	-1.0
1,478,170	+		HGI48_RS06960	0.68	+0.5
1,478,170	+		HGI48_RS06960	0.68	-0.5
1,478,170	+		HGI48_RS06960	0.68	+0.7
1,478,171	-				+0.6
1,478,171	-		HGI48_RS06960	0.68	-0.2
1,478,171	-		HGI48_RS06960	0.68	+0.6
1,478,171	-		HGI48_RS06960	0.68	+1.1
1,478,172	+		HGI48_RS06960	0.68	+0.6
1,478,172	+		HGI48_RS06960	0.68	-0.5
1,478,172	+		HGI48_RS06960	0.68	+0.8
1,478,173	-		HGI48_RS06960	0.68	-0.2
1,478,173	-				-1.5
1,478,189	-		HGI48_RS06960	0.69	+0.4