Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05785

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,217,182	-		HGI48_RS05775	0.27	-1.2
1,217,185	+		HGI48_RS05775	0.28	-2.2
1,217,197	+				-1.6
1,217,200	-		HGI48_RS05775	0.32	-0.4
1,217,265	+		HGI48_RS05775	0.50	-2.5
1,217,266	-		HGI48_RS05775	0.50	+0.1
1,217,347	+				+0.4
1,217,348	-		HGI48_RS05775	0.72	+0.5
1,217,419	+				-0.0
1,217,424	+				-0.6
1,217,424	+				-2.0
1,217,424	+				+0.2
1,217,425	-				-1.4
1,217,440	-				+1.5
1,217,449	+				-0.6
1,217,449	+				-0.4
1,217,450	-				-2.2
1,217,450	-				-1.2
1,217,450	-				-0.6
1,217,450	-				+1.3
1,217,450	-				+1.2
1,217,450	-				-1.4
1,217,453	+				-2.0
1,217,453	+				+0.6
1,217,453	+				-0.8
1,217,454	-				+0.2
1,217,454	-				-0.0
1,217,463	+				-1.5
1,217,463	+				+1.4
1,217,485	+				-0.6
1,217,486	-				-0.9
1,217,532	+				-0.1
1,217,548	-				-1.6
1,217,548	-				-0.4
1,217,565	-				+0.0
1,217,570	+				+0.3
1,217,647	+				-0.4
1,217,648	-				-2.0
1,217,734	+				+0.1
1,217,734	+				+1.4
1,217,734	+				-0.0
1,217,735	-				+0.1
1,217,735	-				+0.2
1,217,736	+				+1.4
1,217,736	+				-0.6
1,217,736	+				-0.3
1,217,736	+				-1.6
1,217,738	+				-3.4
1,217,738	+				-1.8
1,217,738	+				-1.0
1,217,738	+				-1.8
1,217,738	+				-0.6
1,217,739	-				+0.2
1,217,743	-				-0.9
1,217,743	-				-2.0
1,217,761	+				-1.5
1,217,761	+				-0.6
1,217,761	+				-1.6
1,217,763	+				+1.6
1,217,764	-				-0.0
1,217,764	-				-1.2
1,217,802	-				-0.8
1,217,826	-				+0.2
1,217,952	+				-2.5
1,217,956	-				+1.0
1,217,956	-				-0.4
1,218,011	+		HGI48_RS05780	0.37	+0.6
1,218,022	+		HGI48_RS05780	0.44	-0.2
1,218,022	+		HGI48_RS05780	0.44	-1.8
1,218,022	+		HGI48_RS05780	0.44	-0.4
1,218,050	+		HGI48_RS05780	0.64	-0.4
1,218,050	+				-0.0
1,218,051	-		HGI48_RS05780	0.65	-1.4
1,218,051	-		HGI48_RS05780	0.65	-0.6
1,218,090	+				+0.7
1,218,090	+				-2.2
1,218,091	-				-0.6
1,218,091	-				+1.0
1,218,091	-				-0.4
1,218,091	-				-2.5
1,218,094	-				-1.5
1,218,106	-				+1.0
1,218,164	+		HGI48_RS05785	0.19	+0.4
1,218,179	-		HGI48_RS05785	0.25	+1.0
1,218,199	+		HGI48_RS05785	0.33	-1.0
1,218,199	+		HGI48_RS05785	0.33	-1.4
1,218,199	+		HGI48_RS05785	0.33	+1.1
1,218,199	+		HGI48_RS05785	0.33	-0.5
1,218,200	-		HGI48_RS05785	0.33	-1.4
1,218,200	-		HGI48_RS05785	0.33	+0.3
1,218,200	-		HGI48_RS05785	0.33	-0.2
1,218,202	+		HGI48_RS05785	0.34	-0.7
1,218,203	-		HGI48_RS05785	0.34	-1.0
1,218,203	-		HGI48_RS05785	0.34	-0.0
1,218,238	+		HGI48_RS05785	0.48	-1.6
1,218,238	+		HGI48_RS05785	0.48	+0.1
1,218,238	+		HGI48_RS05785	0.48	-0.3
1,218,238	+		HGI48_RS05785	0.48	-0.3
1,218,238	+		HGI48_RS05785	0.48	+1.0
1,218,238	+		HGI48_RS05785	0.48	-0.9
1,218,239	-		HGI48_RS05785	0.48	-2.5
1,218,239	-		HGI48_RS05785	0.48	-1.6
1,218,244	+		HGI48_RS05785	0.50	-0.2
1,218,265	+		HGI48_RS05785	0.59	+0.4
1,218,266	-		HGI48_RS05785	0.59	+0.2
1,218,343	+				+0.3
1,218,344	-				-0.1
1,218,347	+				-2.2
1,218,347	+				+0.7
1,218,347	+				-0.8
1,218,348	-				+1.4
1,218,348	-				-0.8
1,218,435	+				-0.9
1,218,435	+				-1.6
1,218,436	-				-0.6
1,218,490	-				-1.4
1,218,520	+				-1.4
1,218,520	+				-0.2
1,218,529	+				+0.1
1,218,529	+				-1.4
1,218,529	+				-0.4
1,218,530	-				-0.6
1,218,530	-				-0.4
1,218,531	+				+0.6
1,218,531	+				+1.0
1,218,531	+				-0.5
1,218,531	+				+0.3
1,218,531	+				+1.5
1,218,531	+				+0.1
1,218,532	-				+0.8
1,218,532	-				-0.0
1,218,532	-				-1.4
1,218,532	-				-0.6
1,218,532	-				+0.3
1,218,540	+				-1.4
1,218,611	+				-0.4
1,218,611	+				-3.0
1,218,611	+				-0.6
1,218,639	+				-0.8
1,218,640	-				-1.0
1,218,640	-				-0.0
1,218,640	-				+1.4
1,218,724	+				-2.2
1,218,808	+				+0.3
1,218,809	-				+0.6
1,218,809	-				-0.9
1,218,809	-				+0.7
1,218,911	+		HGI48_RS05790	0.12	-0.6
1,218,911	+		HGI48_RS05790	0.12	-0.0
1,218,911	+		HGI48_RS05790	0.12	-0.6
1,218,911	+		HGI48_RS05790	0.12	+0.4
1,218,912	-		HGI48_RS05790	0.12	-0.0
1,218,921	+		HGI48_RS05790	0.12	+0.1
1,219,023	+		HGI48_RS05790	0.15	-1.0
1,219,023	+		HGI48_RS05790	0.15	+1.0
1,219,023	+		HGI48_RS05790	0.15	-0.8
1,219,024	-		HGI48_RS05790	0.15	-0.6
1,219,024	-		HGI48_RS05790	0.15	+0.7
1,219,063	+		HGI48_RS05790	0.17	-1.7
1,219,064	-		HGI48_RS05790	0.17	-1.4
1,219,067	-				-1.6
1,219,067	-		HGI48_RS05790	0.17	+0.1
1,219,067	-		HGI48_RS05790	0.17	+0.1
1,219,067	-				-0.4
1,219,114	+		HGI48_RS05790	0.18	-0.5
1,219,114	+		HGI48_RS05790	0.18	-0.0
1,219,114	+				-2.0
1,219,114	+		HGI48_RS05790	0.18	-2.4
1,219,115	-		HGI48_RS05790	0.18	-1.9
1,219,240	+		HGI48_RS05790	0.22	-0.2
1,219,242	+		HGI48_RS05790	0.22	+0.2
1,219,242	+		HGI48_RS05790	0.22	-1.6
1,219,242	+		HGI48_RS05790	0.22	-1.4
1,219,243	-		HGI48_RS05790	0.22	-2.4
1,219,243	-		HGI48_RS05790	0.22	-1.2
1,219,267	-		HGI48_RS05790	0.23	+1.4
1,219,329	+		HGI48_RS05790	0.25	+1.4
1,219,329	+		HGI48_RS05790	0.25	-2.0
1,219,330	-		HGI48_RS05790	0.25	-0.6
1,219,330	-		HGI48_RS05790	0.25	-1.0
1,219,330	-		HGI48_RS05790	0.25	+2.0
1,219,367	-		HGI48_RS05790	0.26	-3.0