Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05575

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS05565 and HGI48_RS05570 are separated by 120 nucleotidesHGI48_RS05570 and HGI48_RS05575 are separated by 22 nucleotidesHGI48_RS05575 and HGI48_RS05580 are separated by 60 nucleotides HGI48_RS05565: HGI48_RS05565 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,173,527 to 1,174,639 _RS05565 HGI48_RS05570: HGI48_RS05570 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,174,760 to 1,175,233 _RS05570 HGI48_RS05575: HGI48_RS05575 - transcription antitermination factor NusB, at 1,175,256 to 1,175,675 _RS05575 HGI48_RS05580: HGI48_RS05580 - thiamine-phosphate kinase, at 1,175,736 to 1,176,710 _RS05580 Position (kb) 1175 1176Strain fitness (log2 ratio) -2 -1 0 1at 1174.709 kb on + strandat 1174.709 kb on + strandat 1174.709 kb on + strandat 1174.709 kb on + strandat 1174.710 kb on - strandat 1174.710 kb on - strandat 1174.710 kb on - strandat 1174.714 kb on + strandat 1174.714 kb on + strandat 1174.714 kb on + strandat 1174.714 kb on + strandat 1174.714 kb on + strandat 1175.716 kb on + strandat 1175.719 kb on + strandat 1175.719 kb on + strandat 1175.719 kb on + strandat 1175.735 kb on + strandat 1175.735 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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1,174,709 + +1.0
1,174,709 + -0.2
1,174,709 + +0.6
1,174,709 + +1.1
1,174,710 - -0.6
1,174,710 - -1.3
1,174,710 - +0.3
1,174,714 + +1.4
1,174,714 + -1.2
1,174,714 + -1.2
1,174,714 + -1.2
1,174,714 + -0.3
1,175,716 + +0.5
1,175,719 + +0.6
1,175,719 + -1.0
1,175,719 + -0.6
1,175,735 + -2.6
1,175,735 + -1.0

Or see this region's nucleotide sequence