Experiment: M9+sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01965 and HGI48_RS01970 are separated by 221 nucleotides HGI48_RS01970 and HGI48_RS01975 are separated by 218 nucleotides
HGI48_RS01965: HGI48_RS01965 - LPS export ABC transporter permease LptG, at 436,561 to 437,631
_RS01965
HGI48_RS01970: HGI48_RS01970 - tRNA-Leu, at 437,853 to 437,937
_RS01970
HGI48_RS01975: HGI48_RS01975 - integrase arm-type DNA-binding domain-containing protein, at 438,156 to 439,412
_RS01975
Position (kb) 437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 437.687 kb on + strand at 437.716 kb on - strand at 438.207 kb on + strand at 438.207 kb on + strand at 438.235 kb on - strand at 438.260 kb on + strand at 438.260 kb on + strand at 438.261 kb on - strand at 438.270 kb on + strand at 438.294 kb on - strand, within HGI48_RS01975 at 438.446 kb on + strand, within HGI48_RS01975 at 438.446 kb on + strand at 438.447 kb on - strand, within HGI48_RS01975 at 438.447 kb on - strand at 438.447 kb on - strand, within HGI48_RS01975 at 438.447 kb on - strand at 438.482 kb on + strand, within HGI48_RS01975 at 438.482 kb on + strand, within HGI48_RS01975 at 438.482 kb on + strand, within HGI48_RS01975 at 438.482 kb on + strand, within HGI48_RS01975 at 438.483 kb on - strand at 438.483 kb on - strand at 438.545 kb on + strand, within HGI48_RS01975 at 438.546 kb on - strand, within HGI48_RS01975 at 438.546 kb on - strand, within HGI48_RS01975 at 438.546 kb on - strand, within HGI48_RS01975 at 438.599 kb on - strand, within HGI48_RS01975 at 438.599 kb on - strand, within HGI48_RS01975 at 438.644 kb on - strand, within HGI48_RS01975 at 438.644 kb on - strand, within HGI48_RS01975 at 438.674 kb on + strand, within HGI48_RS01975 at 438.674 kb on + strand, within HGI48_RS01975 at 438.676 kb on + strand, within HGI48_RS01975 at 438.677 kb on + strand at 438.678 kb on - strand, within HGI48_RS01975 at 438.692 kb on - strand, within HGI48_RS01975 at 438.785 kb on + strand, within HGI48_RS01975 at 438.785 kb on + strand at 438.786 kb on - strand, within HGI48_RS01975 at 438.786 kb on - strand, within HGI48_RS01975 at 438.786 kb on - strand, within HGI48_RS01975 at 438.819 kb on + strand at 438.819 kb on + strand, within HGI48_RS01975 at 438.819 kb on + strand, within HGI48_RS01975 at 438.819 kb on + strand, within HGI48_RS01975 at 438.820 kb on - strand, within HGI48_RS01975 at 438.820 kb on - strand, within HGI48_RS01975 at 438.820 kb on - strand, within HGI48_RS01975 at 438.820 kb on - strand, within HGI48_RS01975 at 438.851 kb on - strand at 438.929 kb on + strand, within HGI48_RS01975 at 438.929 kb on + strand, within HGI48_RS01975 at 438.929 kb on + strand, within HGI48_RS01975 at 438.929 kb on + strand, within HGI48_RS01975 at 438.929 kb on + strand, within HGI48_RS01975 at 438.929 kb on + strand at 438.929 kb on + strand, within HGI48_RS01975 at 438.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+sucrose remove 437,687 + -0.2 437,716 - -0.2 438,207 + +0.6 438,207 + +0.8 438,235 - -0.5 438,260 + -2.1 438,260 + +0.6 438,261 - -1.9 438,270 + +0.7 438,294 - HGI48_RS01975 0.11 -0.0 438,446 + HGI48_RS01975 0.23 -1.6 438,446 + +1.0 438,447 - HGI48_RS01975 0.23 +2.0 438,447 - -0.6 438,447 - HGI48_RS01975 0.23 +0.7 438,447 - -0.4 438,482 + HGI48_RS01975 0.26 -2.8 438,482 + HGI48_RS01975 0.26 -1.1 438,482 + HGI48_RS01975 0.26 +1.0 438,482 + HGI48_RS01975 0.26 -1.2 438,483 - -1.4 438,483 - -1.4 438,545 + HGI48_RS01975 0.31 +0.3 438,546 - HGI48_RS01975 0.31 -2.2 438,546 - HGI48_RS01975 0.31 +1.2 438,546 - HGI48_RS01975 0.31 -1.4 438,599 - HGI48_RS01975 0.35 +0.2 438,599 - HGI48_RS01975 0.35 +0.1 438,644 - HGI48_RS01975 0.39 +1.8 438,644 - HGI48_RS01975 0.39 +0.5 438,674 + HGI48_RS01975 0.41 +0.2 438,674 + HGI48_RS01975 0.41 +0.8 438,676 + HGI48_RS01975 0.41 -0.8 438,677 + -2.1 438,678 - HGI48_RS01975 0.42 +1.0 438,692 - HGI48_RS01975 0.43 +0.2 438,785 + HGI48_RS01975 0.50 +0.0 438,785 + +0.2 438,786 - HGI48_RS01975 0.50 +1.5 438,786 - HGI48_RS01975 0.50 -0.8 438,786 - HGI48_RS01975 0.50 +0.8 438,819 + -1.4 438,819 + HGI48_RS01975 0.53 +0.7 438,819 + HGI48_RS01975 0.53 -1.6 438,819 + HGI48_RS01975 0.53 +2.0 438,820 - HGI48_RS01975 0.53 +0.8 438,820 - HGI48_RS01975 0.53 +1.2 438,820 - HGI48_RS01975 0.53 -1.1 438,820 - HGI48_RS01975 0.53 +0.5 438,851 - -0.1 438,929 + HGI48_RS01975 0.61 -0.8 438,929 + HGI48_RS01975 0.61 -0.8 438,929 + HGI48_RS01975 0.61 -0.0 438,929 + HGI48_RS01975 0.61 +0.9 438,929 + HGI48_RS01975 0.61 -0.1 438,929 + +0.6 438,929 + HGI48_RS01975 0.61 +0.2 438,930 - -1.1
Or see this region's nucleotide sequence