Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03485 and DZA65_RS03490 are separated by 89 nucleotides DZA65_RS03490 and DZA65_RS03495 are separated by 23 nucleotides DZA65_RS03495 and DZA65_RS03500 are separated by 166 nucleotides
DZA65_RS03485: DZA65_RS03485 - site-specific tyrosine recombinase XerD, at 736,007 to 736,906
_RS03485
DZA65_RS03490: DZA65_RS03490 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 736,996 to 737,712
_RS03490
DZA65_RS03495: DZA65_RS03495 - single-stranded-DNA-specific exonuclease RecJ, at 737,736 to 739,466
_RS03495
DZA65_RS03500: DZA65_RS03500 - peptide chain release factor 2, at 739,633 to 740,731
_RS03500
Position (kb) 737
738
739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.981 kb on + strand at 736.981 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 736.989 kb on + strand at 737.009 kb on + strand at 737.009 kb on + strand at 737.009 kb on + strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.010 kb on - strand at 737.012 kb on + strand at 737.013 kb on - strand at 737.013 kb on - strand at 737.013 kb on - strand at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.170 kb on + strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.171 kb on - strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.212 kb on + strand, within DZA65_RS03490 at 737.213 kb on - strand, within DZA65_RS03490 at 737.253 kb on + strand, within DZA65_RS03490 at 737.254 kb on - strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.381 kb on + strand, within DZA65_RS03490 at 737.382 kb on - strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.389 kb on + strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.390 kb on - strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.391 kb on + strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.392 kb on - strand, within DZA65_RS03490 at 737.425 kb on + strand, within DZA65_RS03490 at 737.425 kb on + strand, within DZA65_RS03490 at 737.547 kb on + strand, within DZA65_RS03490 at 737.548 kb on - strand, within DZA65_RS03490 at 737.710 kb on + strand at 737.727 kb on + strand at 737.786 kb on - strand at 737.820 kb on + strand at 737.821 kb on - strand at 737.836 kb on + strand at 738.045 kb on + strand, within DZA65_RS03495 at 738.045 kb on + strand, within DZA65_RS03495 at 738.045 kb on + strand, within DZA65_RS03495 at 738.046 kb on - strand, within DZA65_RS03495 at 738.084 kb on - strand, within DZA65_RS03495 at 738.128 kb on + strand, within DZA65_RS03495 at 738.468 kb on - strand, within DZA65_RS03495 at 738.487 kb on + strand, within DZA65_RS03495 at 738.629 kb on + strand, within DZA65_RS03495 at 738.629 kb on + strand, within DZA65_RS03495 at 738.629 kb on + strand, within DZA65_RS03495 at 738.630 kb on - strand, within DZA65_RS03495 at 738.630 kb on - strand, within DZA65_RS03495 at 738.630 kb on - strand, within DZA65_RS03495 at 738.630 kb on - strand, within DZA65_RS03495 at 738.630 kb on - strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.813 kb on + strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.814 kb on - strand, within DZA65_RS03495 at 738.981 kb on - strand, within DZA65_RS03495 at 738.981 kb on - strand, within DZA65_RS03495 at 739.392 kb on + strand at 739.393 kb on - strand at 739.432 kb on + strand at 739.433 kb on - strand at 739.433 kb on - strand at 739.433 kb on - strand at 739.465 kb on - strand at 739.465 kb on - strand at 739.478 kb on + strand at 739.479 kb on - strand at 739.486 kb on - strand at 739.486 kb on - strand at 739.551 kb on + strand at 739.553 kb on + strand at 739.553 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.588 kb on + strand at 739.618 kb on + strand at 739.618 kb on + strand at 739.618 kb on + strand at 739.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 736,981 + -1.1 736,981 + +0.3 736,989 + -0.1 736,989 + -0.7 736,989 + -1.6 736,989 + +1.4 737,009 + -0.8 737,009 + -1.1 737,009 + +0.5 737,010 - +1.0 737,010 - +0.3 737,010 - +0.5 737,010 - +1.0 737,010 - -0.7 737,010 - +0.2 737,012 + -0.8 737,013 - +0.7 737,013 - -0.9 737,013 - -2.1 737,170 + DZA65_RS03490 0.24 -1.6 737,170 + DZA65_RS03490 0.24 +2.3 737,170 + DZA65_RS03490 0.24 -0.6 737,170 + DZA65_RS03490 0.24 +0.7 737,170 + DZA65_RS03490 0.24 -0.7 737,170 + DZA65_RS03490 0.24 +2.3 737,170 + DZA65_RS03490 0.24 +0.2 737,170 + DZA65_RS03490 0.24 +0.5 737,170 + DZA65_RS03490 0.24 -0.6 737,170 + DZA65_RS03490 0.24 -0.5 737,171 - DZA65_RS03490 0.24 +1.3 737,171 - DZA65_RS03490 0.24 -0.1 737,171 - DZA65_RS03490 0.24 -0.4 737,171 - DZA65_RS03490 0.24 +0.7 737,212 + DZA65_RS03490 0.30 -0.8 737,212 + DZA65_RS03490 0.30 +1.1 737,212 + DZA65_RS03490 0.30 -0.6 737,212 + DZA65_RS03490 0.30 -1.4 737,213 - DZA65_RS03490 0.30 -0.6 737,253 + DZA65_RS03490 0.36 -0.6 737,254 - DZA65_RS03490 0.36 +1.2 737,381 + DZA65_RS03490 0.54 +0.5 737,381 + DZA65_RS03490 0.54 -0.3 737,381 + DZA65_RS03490 0.54 -0.3 737,381 + DZA65_RS03490 0.54 -0.8 737,382 - DZA65_RS03490 0.54 -1.1 737,389 + DZA65_RS03490 0.55 -1.0 737,389 + DZA65_RS03490 0.55 +1.7 737,389 + DZA65_RS03490 0.55 -0.7 737,389 + DZA65_RS03490 0.55 +0.3 737,389 + DZA65_RS03490 0.55 -2.1 737,390 - DZA65_RS03490 0.55 -2.1 737,390 - DZA65_RS03490 0.55 -0.3 737,390 - DZA65_RS03490 0.55 +1.2 737,391 + DZA65_RS03490 0.55 -1.3 737,391 + DZA65_RS03490 0.55 -0.7 737,391 + DZA65_RS03490 0.55 -1.1 737,392 - DZA65_RS03490 0.55 -0.6 737,392 - DZA65_RS03490 0.55 -0.3 737,392 - DZA65_RS03490 0.55 +0.7 737,392 - DZA65_RS03490 0.55 -0.8 737,392 - DZA65_RS03490 0.55 +0.0 737,392 - DZA65_RS03490 0.55 +1.7 737,425 + DZA65_RS03490 0.60 +0.6 737,425 + DZA65_RS03490 0.60 -2.7 737,547 + DZA65_RS03490 0.77 -0.7 737,548 - DZA65_RS03490 0.77 +0.4 737,710 + -0.3 737,727 + -0.1 737,786 - -0.3 737,820 + -0.3 737,821 - -1.6 737,836 + +0.2 738,045 + DZA65_RS03495 0.18 -1.3 738,045 + DZA65_RS03495 0.18 +0.2 738,045 + DZA65_RS03495 0.18 -2.0 738,046 - DZA65_RS03495 0.18 -0.3 738,084 - DZA65_RS03495 0.20 +0.7 738,128 + DZA65_RS03495 0.23 +0.7 738,468 - DZA65_RS03495 0.42 +0.4 738,487 + DZA65_RS03495 0.43 -0.6 738,629 + DZA65_RS03495 0.52 +0.7 738,629 + DZA65_RS03495 0.52 -0.8 738,629 + DZA65_RS03495 0.52 -1.6 738,630 - DZA65_RS03495 0.52 -1.4 738,630 - DZA65_RS03495 0.52 -1.6 738,630 - DZA65_RS03495 0.52 +0.7 738,630 - DZA65_RS03495 0.52 -0.8 738,630 - DZA65_RS03495 0.52 -1.4 738,813 + DZA65_RS03495 0.62 -0.8 738,813 + DZA65_RS03495 0.62 -0.6 738,813 + DZA65_RS03495 0.62 -0.4 738,813 + DZA65_RS03495 0.62 +0.3 738,813 + DZA65_RS03495 0.62 -1.6 738,814 - DZA65_RS03495 0.62 +0.2 738,814 - DZA65_RS03495 0.62 +0.7 738,814 - DZA65_RS03495 0.62 -0.8 738,814 - DZA65_RS03495 0.62 -0.6 738,981 - DZA65_RS03495 0.72 -1.1 738,981 - DZA65_RS03495 0.72 -1.4 739,392 + -0.8 739,393 - -0.8 739,432 + -1.0 739,433 - +0.0 739,433 - -1.3 739,433 - +0.2 739,465 - +1.2 739,465 - +0.7 739,478 + -0.9 739,479 - -0.8 739,486 - -1.4 739,486 - -0.3 739,551 + +0.1 739,553 + +1.5 739,553 + +0.7 739,588 + -0.3 739,588 + +0.7 739,588 + -0.6 739,588 + +1.9 739,588 + -1.6 739,618 + -1.1 739,618 + -0.8 739,618 + +0.7 739,618 + -1.4
Or see this region's nucleotide sequence