Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01195

Experiment: M9+polygalacturonate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01190 and DZA65_RS01195 overlap by 1 nucleotidesDZA65_RS01195 and DZA65_RS01200 are separated by 1 nucleotidesDZA65_RS01200 and DZA65_RS01205 overlap by 4 nucleotidesDZA65_RS01205 and DZA65_RS01210 are separated by 1 nucleotides DZA65_RS01190: DZA65_RS01190 - 2-iminoacetate synthase ThiH, at 267,556 to 268,704 _RS01190 DZA65_RS01195: DZA65_RS01195 - thiazole synthase, at 268,704 to 269,483 _RS01195 DZA65_RS01200: DZA65_RS01200 - sulfur carrier protein ThiS, at 269,485 to 269,685 _RS01200 DZA65_RS01205: DZA65_RS01205 - HesA/MoeB/ThiF family protein, at 269,682 to 270,431 _RS01205 DZA65_RS01210: DZA65_RS01210 - thiamine phosphate synthase, at 270,433 to 271,068 _RS01210 Position (kb) 268 269 270Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 267.938 kb on + strand, within DZA65_RS01190at 267.938 kb on + strand, within DZA65_RS01190at 267.938 kb on + strand, within DZA65_RS01190at 267.939 kb on - strand, within DZA65_RS01190at 267.939 kb on - strand, within DZA65_RS01190at 267.939 kb on - strand, within DZA65_RS01190at 267.939 kb on - strand, within DZA65_RS01190at 267.953 kb on + strand, within DZA65_RS01190at 267.953 kb on + strand, within DZA65_RS01190at 267.953 kb on + strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.954 kb on - strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.975 kb on + strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.976 kb on - strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.977 kb on + strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 267.978 kb on - strand, within DZA65_RS01190at 268.119 kb on - strand, within DZA65_RS01190at 268.133 kb on + strand, within DZA65_RS01190at 268.133 kb on + strand, within DZA65_RS01190at 268.133 kb on + strand, within DZA65_RS01190at 268.133 kb on + strand, within DZA65_RS01190at 268.134 kb on - strand, within DZA65_RS01190at 268.134 kb on - strand, within DZA65_RS01190at 268.134 kb on - strand, within DZA65_RS01190at 268.145 kb on + strand, within DZA65_RS01190at 268.146 kb on - strand, within DZA65_RS01190at 268.162 kb on + strand, within DZA65_RS01190at 268.162 kb on + strand, within DZA65_RS01190at 268.162 kb on + strand, within DZA65_RS01190at 268.188 kb on - strand, within DZA65_RS01190at 268.268 kb on + strand, within DZA65_RS01190at 268.268 kb on + strand, within DZA65_RS01190at 268.268 kb on + strand, within DZA65_RS01190at 268.268 kb on + strand, within DZA65_RS01190at 268.269 kb on - strand, within DZA65_RS01190at 268.284 kb on + strand, within DZA65_RS01190at 268.284 kb on + strand, within DZA65_RS01190at 268.284 kb on + strand, within DZA65_RS01190at 268.338 kb on + strand, within DZA65_RS01190at 268.339 kb on - strand, within DZA65_RS01190at 268.339 kb on - strand, within DZA65_RS01190at 268.339 kb on - strand, within DZA65_RS01190at 268.339 kb on - strand, within DZA65_RS01190at 268.339 kb on - strand, within DZA65_RS01190at 268.415 kb on + strand, within DZA65_RS01190at 268.415 kb on + strand, within DZA65_RS01190at 268.416 kb on - strand, within DZA65_RS01190at 268.416 kb on - strand, within DZA65_RS01190at 268.448 kb on + strand, within DZA65_RS01190at 268.448 kb on + strand, within DZA65_RS01190at 268.449 kb on - strand, within DZA65_RS01190at 268.449 kb on - strand, within DZA65_RS01190at 268.460 kb on + strand, within DZA65_RS01190at 268.460 kb on + strand, within DZA65_RS01190at 268.460 kb on + strand, within DZA65_RS01190at 268.461 kb on - strand, within DZA65_RS01190at 268.461 kb on - strand, within DZA65_RS01190at 268.461 kb on - strand, within DZA65_RS01190at 268.461 kb on - strand, within DZA65_RS01190at 268.473 kb on + strand, within DZA65_RS01190at 268.474 kb on - strand, within DZA65_RS01190at 268.563 kb on + strand, within DZA65_RS01190at 268.563 kb on + strand, within DZA65_RS01190at 268.564 kb on - strand, within DZA65_RS01190at 268.564 kb on - strand, within DZA65_RS01190at 268.564 kb on - strand, within DZA65_RS01190at 268.564 kb on - strand, within DZA65_RS01190at 268.792 kb on + strand, within DZA65_RS01195at 269.072 kb on + strand, within DZA65_RS01195at 269.072 kb on + strand, within DZA65_RS01195at 269.073 kb on - strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.173 kb on + strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.174 kb on - strand, within DZA65_RS01195at 269.279 kb on + strand, within DZA65_RS01195at 269.280 kb on - strand, within DZA65_RS01195at 269.280 kb on - strand, within DZA65_RS01195at 269.295 kb on + strand, within DZA65_RS01195at 269.296 kb on - strand, within DZA65_RS01195at 269.456 kb on + strandat 269.465 kb on + strandat 269.920 kb on + strand, within DZA65_RS01205at 269.920 kb on + strand, within DZA65_RS01205at 270.146 kb on + strand, within DZA65_RS01205at 270.292 kb on + strand, within DZA65_RS01205at 270.293 kb on - strand, within DZA65_RS01205at 270.293 kb on - strand, within DZA65_RS01205at 270.410 kb on + strandat 270.410 kb on + strandat 270.410 kb on + strandat 270.410 kb on + strandat 270.411 kb on - strandat 270.411 kb on - strandat 270.411 kb on - strandat 270.411 kb on - strandat 270.434 kb on + strandat 270.435 kb on - strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.454 kb on + strandat 270.455 kb on - strandat 270.455 kb on - strandat 270.455 kb on - strandat 270.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+polygalacturonate
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267,938 + DZA65_RS01190 0.33 -2.6
267,938 + DZA65_RS01190 0.33 -2.2
267,938 + DZA65_RS01190 0.33 +0.0
267,939 - DZA65_RS01190 0.33 -0.6
267,939 - DZA65_RS01190 0.33 -2.2
267,939 - DZA65_RS01190 0.33 -2.6
267,939 - DZA65_RS01190 0.33 -1.8
267,953 + DZA65_RS01190 0.35 +0.4
267,953 + DZA65_RS01190 0.35 -1.6
267,953 + DZA65_RS01190 0.35 -1.1
267,954 - DZA65_RS01190 0.35 -0.6
267,954 - DZA65_RS01190 0.35 -2.3
267,954 - DZA65_RS01190 0.35 -1.2
267,954 - DZA65_RS01190 0.35 -1.8
267,954 - DZA65_RS01190 0.35 -1.0
267,954 - DZA65_RS01190 0.35 -0.4
267,954 - DZA65_RS01190 0.35 -0.8
267,954 - DZA65_RS01190 0.35 -1.3
267,954 - DZA65_RS01190 0.35 -0.3
267,954 - DZA65_RS01190 0.35 -1.0
267,975 + DZA65_RS01190 0.36 -1.5
267,975 + DZA65_RS01190 0.36 -2.5
267,975 + DZA65_RS01190 0.36 -1.6
267,975 + DZA65_RS01190 0.36 -2.3
267,975 + DZA65_RS01190 0.36 -1.0
267,975 + DZA65_RS01190 0.36 -2.5
267,975 + DZA65_RS01190 0.36 -1.6
267,975 + DZA65_RS01190 0.36 -3.1
267,975 + DZA65_RS01190 0.36 -1.8
267,975 + DZA65_RS01190 0.36 -0.6
267,975 + DZA65_RS01190 0.36 -3.4
267,975 + DZA65_RS01190 0.36 +0.0
267,976 - DZA65_RS01190 0.37 -1.0
267,976 - DZA65_RS01190 0.37 -0.6
267,976 - DZA65_RS01190 0.37 -0.6
267,976 - DZA65_RS01190 0.37 -2.8
267,976 - DZA65_RS01190 0.37 -3.8
267,976 - DZA65_RS01190 0.37 -1.8
267,976 - DZA65_RS01190 0.37 -1.3
267,976 - DZA65_RS01190 0.37 -1.3
267,977 + DZA65_RS01190 0.37 -1.6
267,977 + DZA65_RS01190 0.37 -3.3
267,977 + DZA65_RS01190 0.37 -1.0
267,977 + DZA65_RS01190 0.37 -1.0
267,977 + DZA65_RS01190 0.37 -1.6
267,977 + DZA65_RS01190 0.37 -2.4
267,977 + DZA65_RS01190 0.37 -2.6
267,977 + DZA65_RS01190 0.37 -2.9
267,977 + DZA65_RS01190 0.37 -0.8
267,977 + DZA65_RS01190 0.37 -2.4
267,977 + DZA65_RS01190 0.37 -1.2
267,977 + DZA65_RS01190 0.37 -0.6
267,977 + DZA65_RS01190 0.37 -0.3
267,977 + DZA65_RS01190 0.37 -1.8
267,977 + DZA65_RS01190 0.37 +0.4
267,977 + DZA65_RS01190 0.37 +0.0
267,977 + DZA65_RS01190 0.37 -1.2
267,978 - DZA65_RS01190 0.37 +0.0
267,978 - DZA65_RS01190 0.37 +0.0
267,978 - DZA65_RS01190 0.37 -2.3
267,978 - DZA65_RS01190 0.37 -0.6
267,978 - DZA65_RS01190 0.37 -0.3
267,978 - DZA65_RS01190 0.37 -3.2
267,978 - DZA65_RS01190 0.37 -1.0
267,978 - DZA65_RS01190 0.37 -2.6
267,978 - DZA65_RS01190 0.37 -2.4
267,978 - DZA65_RS01190 0.37 +0.0
267,978 - DZA65_RS01190 0.37 -0.8
267,978 - DZA65_RS01190 0.37 -1.8
267,978 - DZA65_RS01190 0.37 -2.2
267,978 - DZA65_RS01190 0.37 -0.6
267,978 - DZA65_RS01190 0.37 -3.1
267,978 - DZA65_RS01190 0.37 -1.4
267,978 - DZA65_RS01190 0.37 -0.8
267,978 - DZA65_RS01190 0.37 -1.0
268,119 - DZA65_RS01190 0.49 -0.6
268,133 + DZA65_RS01190 0.50 -2.7
268,133 + DZA65_RS01190 0.50 -1.9
268,133 + DZA65_RS01190 0.50 +0.0
268,133 + DZA65_RS01190 0.50 -1.3
268,134 - DZA65_RS01190 0.50 -1.0
268,134 - DZA65_RS01190 0.50 -0.2
268,134 - DZA65_RS01190 0.50 -1.0
268,145 + DZA65_RS01190 0.51 -2.7
268,146 - DZA65_RS01190 0.51 -0.1
268,162 + DZA65_RS01190 0.53 -3.1
268,162 + DZA65_RS01190 0.53 -1.6
268,162 + DZA65_RS01190 0.53 -1.0
268,188 - DZA65_RS01190 0.55 -1.3
268,268 + DZA65_RS01190 0.62 -3.3
268,268 + DZA65_RS01190 0.62 -2.8
268,268 + DZA65_RS01190 0.62 +0.0
268,268 + DZA65_RS01190 0.62 -2.3
268,269 - DZA65_RS01190 0.62 -1.8
268,284 + DZA65_RS01190 0.63 -1.3
268,284 + DZA65_RS01190 0.63 -2.7
268,284 + DZA65_RS01190 0.63 -5.1
268,338 + DZA65_RS01190 0.68 -0.6
268,339 - DZA65_RS01190 0.68 -0.8
268,339 - DZA65_RS01190 0.68 -3.3
268,339 - DZA65_RS01190 0.68 -0.6
268,339 - DZA65_RS01190 0.68 -1.0
268,339 - DZA65_RS01190 0.68 -2.2
268,415 + DZA65_RS01190 0.75 -2.6
268,415 + DZA65_RS01190 0.75 -1.3
268,416 - DZA65_RS01190 0.75 +0.0
268,416 - DZA65_RS01190 0.75 -1.0
268,448 + DZA65_RS01190 0.78 +1.0
268,448 + DZA65_RS01190 0.78 -3.9
268,449 - DZA65_RS01190 0.78 -2.4
268,449 - DZA65_RS01190 0.78 -1.8
268,460 + DZA65_RS01190 0.79 -1.0
268,460 + DZA65_RS01190 0.79 -2.1
268,460 + DZA65_RS01190 0.79 -2.4
268,461 - DZA65_RS01190 0.79 -1.6
268,461 - DZA65_RS01190 0.79 -0.6
268,461 - DZA65_RS01190 0.79 -1.3
268,461 - DZA65_RS01190 0.79 -2.8
268,473 + DZA65_RS01190 0.80 -0.6
268,474 - DZA65_RS01190 0.80 -2.4
268,563 + DZA65_RS01190 0.88 -0.6
268,563 + DZA65_RS01190 0.88 -1.0
268,564 - DZA65_RS01190 0.88 -1.6
268,564 - DZA65_RS01190 0.88 -1.3
268,564 - DZA65_RS01190 0.88 -1.3
268,564 - DZA65_RS01190 0.88 -2.2
268,792 + DZA65_RS01195 0.11 -1.2
269,072 + DZA65_RS01195 0.47 -2.0
269,072 + DZA65_RS01195 0.47 -2.3
269,073 - DZA65_RS01195 0.47 -0.6
269,173 + DZA65_RS01195 0.60 -1.6
269,173 + DZA65_RS01195 0.60 -3.3
269,173 + DZA65_RS01195 0.60 -0.6
269,173 + DZA65_RS01195 0.60 +0.0
269,173 + DZA65_RS01195 0.60 +0.0
269,173 + DZA65_RS01195 0.60 -1.3
269,173 + DZA65_RS01195 0.60 -1.8
269,174 - DZA65_RS01195 0.60 -2.7
269,174 - DZA65_RS01195 0.60 -0.6
269,174 - DZA65_RS01195 0.60 +0.0
269,174 - DZA65_RS01195 0.60 -2.0
269,279 + DZA65_RS01195 0.74 -4.2
269,280 - DZA65_RS01195 0.74 -1.8
269,280 - DZA65_RS01195 0.74 -1.0
269,295 + DZA65_RS01195 0.76 -2.4
269,296 - DZA65_RS01195 0.76 -2.9
269,456 + -2.0
269,465 + -2.7
269,920 + DZA65_RS01205 0.32 +0.7
269,920 + DZA65_RS01205 0.32 -2.3
270,146 + DZA65_RS01205 0.62 -1.8
270,292 + DZA65_RS01205 0.81 -1.0
270,293 - DZA65_RS01205 0.81 -0.8
270,293 - DZA65_RS01205 0.81 -1.7
270,410 + -1.3
270,410 + -3.0
270,410 + +0.0
270,410 + -2.6
270,411 - -2.2
270,411 - -1.3
270,411 - -0.8
270,411 - +0.8
270,434 + -0.6
270,435 - -0.3
270,454 + -1.2
270,454 + -2.7
270,454 + -1.6
270,454 + -2.2
270,455 - -2.2
270,455 - +1.0
270,455 - -0.2
270,464 - -2.2

Or see this region's nucleotide sequence