Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13845

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
2,970,822	+		DZA65_RS13840	0.38	-1.6
2,970,886	-		DZA65_RS13840	0.42	+0.5
2,970,901	+		DZA65_RS13840	0.43	+1.2
2,970,902	-		DZA65_RS13840	0.44	+0.7
2,970,929	+		DZA65_RS13840	0.45	+0.1
2,970,930	-		DZA65_RS13840	0.46	-1.0
2,970,969	-		DZA65_RS13840	0.48	-0.4
2,970,973	-		DZA65_RS13840	0.49	-0.8
2,970,973	-		DZA65_RS13840	0.49	+0.5
2,971,023	+		DZA65_RS13840	0.52	-1.6
2,971,024	-		DZA65_RS13840	0.52	+0.2
2,971,028	-		DZA65_RS13840	0.52	-0.6
2,971,037	+		DZA65_RS13840	0.53	+1.0
2,971,089	+		DZA65_RS13840	0.57	-0.9
2,971,092	-		DZA65_RS13840	0.57	+0.0
2,971,103	+		DZA65_RS13840	0.58	+0.1
2,971,120	+		DZA65_RS13840	0.59	-0.0
2,971,120	+		DZA65_RS13840	0.59	-0.1
2,971,164	+		DZA65_RS13840	0.62	-1.2
2,971,165	-		DZA65_RS13840	0.62	-0.3
2,971,169	+		DZA65_RS13840	0.62	+0.1
2,971,170	-		DZA65_RS13840	0.62	-0.1
2,971,214	+		DZA65_RS13840	0.65	+1.0
2,971,382	-		DZA65_RS13840	0.77	+1.4
2,971,397	+		DZA65_RS13840	0.78	-2.6
2,971,397	+		DZA65_RS13840	0.78	+0.5
2,971,398	-		DZA65_RS13840	0.78	+1.1
2,971,416	+		DZA65_RS13840	0.80	+0.8
2,971,419	-		DZA65_RS13840	0.80	-0.1
2,971,431	+		DZA65_RS13840	0.81	+0.7
2,971,431	+		DZA65_RS13840	0.81	-2.4
2,971,432	-		DZA65_RS13840	0.81	-1.3
2,971,432	-		DZA65_RS13840	0.81	+1.0
2,971,432	-		DZA65_RS13840	0.81	-0.5
2,971,435	+		DZA65_RS13840	0.81	+0.5
2,971,435	+		DZA65_RS13840	0.81	-0.0
2,971,435	+		DZA65_RS13840	0.81	-0.3
2,971,435	+		DZA65_RS13840	0.81	-0.3
2,971,435	+		DZA65_RS13840	0.81	-2.0
2,971,435	+		DZA65_RS13840	0.81	-1.2
2,971,435	+		DZA65_RS13840	0.81	+2.2
2,971,436	-		DZA65_RS13840	0.81	-0.2
2,971,436	-		DZA65_RS13840	0.81	+0.7
2,971,473	+		DZA65_RS13840	0.84	+0.2
2,971,474	-		DZA65_RS13840	0.84	-2.0
2,971,474	-		DZA65_RS13840	0.84	-1.2
2,971,568	+				-1.2
2,971,568	+				+0.9
2,971,573	-				+1.4
2,971,584	+				+0.7
2,971,585	-				+0.0
2,971,643	-				+0.8
2,971,643	-				+1.0
2,971,643	-				+2.2
2,971,670	+				+0.8
2,971,671	-				-0.5
2,971,687	+				-0.6
2,971,687	+				+1.0
2,971,729	-				-0.3
2,971,729	-				-2.1
2,971,733	-				-1.1
2,971,758	+				-0.5
2,971,758	+				-0.6
2,971,759	-				-2.2
2,971,762	-				-0.6
2,971,789	+				-0.4
2,971,790	-				+0.1
2,971,809	+				-1.9
2,971,906	+				+0.5
2,971,907	-				+0.4
2,971,907	-				-0.4
2,971,907	-				+0.4
2,971,907	-				+0.8
2,971,907	-				+0.2
2,971,908	+				+1.0
2,971,909	-				-0.2
2,971,944	+		DZA65_RS13845	0.12	+0.6
2,971,981	+		DZA65_RS13845	0.16	+1.7
2,971,981	+		DZA65_RS13845	0.16	-0.6
2,972,038	+		DZA65_RS13845	0.21	+0.4
2,972,056	+		DZA65_RS13845	0.23	-0.5
2,972,056	+		DZA65_RS13845	0.23	+1.7
2,972,057	-		DZA65_RS13845	0.23	+0.1
2,972,057	-		DZA65_RS13845	0.23	-0.8
2,972,060	+		DZA65_RS13845	0.23	+0.9
2,972,060	+		DZA65_RS13845	0.23	-0.8
2,972,061	-		DZA65_RS13845	0.23	-0.5
2,972,061	-		DZA65_RS13845	0.23	+1.7
2,972,061	-		DZA65_RS13845	0.23	+0.2
2,972,110	+		DZA65_RS13845	0.28	-0.4
2,972,152	+		DZA65_RS13845	0.31	-2.2
2,972,181	+		DZA65_RS13845	0.34	-0.1
2,972,181	+		DZA65_RS13845	0.34	+1.0
2,972,185	+		DZA65_RS13845	0.34	+1.2
2,972,186	-		DZA65_RS13845	0.35	+1.0
2,972,186	-		DZA65_RS13845	0.35	+0.4
2,972,186	-		DZA65_RS13845	0.35	+0.4
2,972,206	+		DZA65_RS13845	0.36	+0.9
2,972,206	+		DZA65_RS13845	0.36	-0.2
2,972,266	-		DZA65_RS13845	0.42	+0.4
2,972,299	+		DZA65_RS13845	0.45	+0.4
2,972,367	+		DZA65_RS13845	0.51	+0.7
2,972,367	+		DZA65_RS13845	0.51	+2.0
2,972,395	+		DZA65_RS13845	0.54	+0.4
2,972,395	+		DZA65_RS13845	0.54	+0.8
2,972,396	-		DZA65_RS13845	0.54	-1.2
2,972,514	+		DZA65_RS13845	0.65	-1.0
2,972,514	+		DZA65_RS13845	0.65	-1.0
2,972,515	-		DZA65_RS13845	0.65	-2.6
2,972,586	+				+0.8
2,972,586	+		DZA65_RS13845	0.71	+1.0
2,972,736	+		DZA65_RS13845	0.85	-0.1
2,972,737	-		DZA65_RS13845	0.85	-0.7
2,972,737	-		DZA65_RS13845	0.85	+0.0
2,972,746	+		DZA65_RS13845	0.86	-2.2
2,972,804	+				-0.0
2,972,804	+				-0.7
2,972,804	+				+0.1
2,972,804	+				+0.4
2,972,805	-				-0.0
2,972,805	-				-1.2
2,972,805	-				-0.3
2,972,805	-				+0.6
2,972,805	-				-1.0
2,972,805	-				-0.0
2,972,805	-				+0.1
2,972,808	+				-0.2
2,972,808	+				+0.4
2,972,808	+				+0.4
2,972,808	+				-0.6
2,972,809	-				+0.6
2,972,809	-				-0.2
2,972,809	-				+1.4
2,972,815	+				-2.0
2,972,816	-				-2.0
2,972,882	-				-0.2
2,972,890	+				+0.1
2,972,891	-				-1.6
2,972,891	-				+0.4
2,972,891	-				+1.0
2,972,912	+				-0.0
2,972,913	-				+0.0
2,973,003	-				+0.5
2,973,011	+				-0.6
2,973,012	-				-1.0
2,973,037	-				+2.0
2,973,042	-				+0.7
2,973,042	-				+1.2
2,973,042	-				-0.5
2,973,065	+				+1.0
2,973,090	-				-0.6
2,973,090	-				-0.3
2,973,117	+				+0.2
2,973,146	+				-1.2
2,973,185	+				+0.5
2,973,185	+				-0.6
2,973,186	-				+0.4
2,973,209	+		DZA65_RS13850	0.11	+0.8
2,973,210	-		DZA65_RS13850	0.11	-1.0
2,973,210	-		DZA65_RS13850	0.11	+0.0
2,973,210	-		DZA65_RS13850	0.11	+0.0
2,973,227	+		DZA65_RS13850	0.12	-0.9
2,973,227	+		DZA65_RS13850	0.12	-0.4
2,973,228	-		DZA65_RS13850	0.12	+0.4
2,973,228	-		DZA65_RS13850	0.12	-0.6
2,973,228	-		DZA65_RS13850	0.12	-1.2
2,973,230	+		DZA65_RS13850	0.13	+0.1
2,973,230	+		DZA65_RS13850	0.13	+0.8
2,973,230	+		DZA65_RS13850	0.13	-0.6
2,973,230	+		DZA65_RS13850	0.13	-0.1
2,973,230	+		DZA65_RS13850	0.13	+0.8
2,973,231	-		DZA65_RS13850	0.13	+0.1
2,973,231	-		DZA65_RS13850	0.13	+1.4
2,973,231	-		DZA65_RS13850	0.13	-0.1
2,973,231	-		DZA65_RS13850	0.13	+0.7
2,973,231	-		DZA65_RS13850	0.13	-0.6
2,973,231	-		DZA65_RS13850	0.13	+1.2
2,973,249	+		DZA65_RS13850	0.14	-0.2
2,973,250	-		DZA65_RS13850	0.14	+0.4
2,973,273	+		DZA65_RS13850	0.16	+1.3
2,973,284	+		DZA65_RS13850	0.17	-0.6
2,973,284	+		DZA65_RS13850	0.17	+1.4
2,973,284	+		DZA65_RS13850	0.17	-0.2
2,973,284	+		DZA65_RS13850	0.17	+1.4
2,973,284	+		DZA65_RS13850	0.17	+0.4
2,973,284	+		DZA65_RS13850	0.17	-0.2
2,973,284	+		DZA65_RS13850	0.17	-0.2
2,973,285	-		DZA65_RS13850	0.17	-0.0
2,973,335	+		DZA65_RS13850	0.22	-0.5
2,973,335	+		DZA65_RS13850	0.22	+0.5
2,973,335	+		DZA65_RS13850	0.22	+0.2
2,973,336	-		DZA65_RS13850	0.22	-0.6
2,973,351	+		DZA65_RS13850	0.23	+1.0
2,973,352	-		DZA65_RS13850	0.23	+1.0
2,973,413	+		DZA65_RS13850	0.29	-0.1
2,973,414	-		DZA65_RS13850	0.29	-0.6
2,973,461	+		DZA65_RS13850	0.33	+0.6
2,973,461	+		DZA65_RS13850	0.33	+1.1
2,973,462	-		DZA65_RS13850	0.33	-0.3
2,973,462	-		DZA65_RS13850	0.33	+0.8
2,973,468	-		DZA65_RS13850	0.34	+0.4
2,973,501	+		DZA65_RS13850	0.36	-0.5
2,973,502	-		DZA65_RS13850	0.37	+1.8
2,973,502	-		DZA65_RS13850	0.37	-1.2
2,973,502	-		DZA65_RS13850	0.37	+0.4
2,973,502	-		DZA65_RS13850	0.37	-0.1
2,973,514	-		DZA65_RS13850	0.38	-1.2
2,973,557	+		DZA65_RS13850	0.41	-2.0
2,973,557	+		DZA65_RS13850	0.41	-3.1
2,973,557	+		DZA65_RS13850	0.41	+0.4
2,973,557	+		DZA65_RS13850	0.41	-1.0
2,973,557	+		DZA65_RS13850	0.41	+0.8
2,973,557	+		DZA65_RS13850	0.41	-0.6
2,973,557	+		DZA65_RS13850	0.41	-1.2
2,973,558	-		DZA65_RS13850	0.41	-0.6
2,973,558	-		DZA65_RS13850	0.41	-0.2
2,973,558	-		DZA65_RS13850	0.41	-1.0
2,973,587	+		DZA65_RS13850	0.44	+0.6
2,973,587	+		DZA65_RS13850	0.44	+1.0
2,973,587	+		DZA65_RS13850	0.44	-1.7
2,973,587	+		DZA65_RS13850	0.44	+0.4
2,973,587	+		DZA65_RS13850	0.44	-0.1
2,973,587	+		DZA65_RS13850	0.44	-1.6
2,973,587	+		DZA65_RS13850	0.44	+1.2
2,973,587	+		DZA65_RS13850	0.44	-0.4
2,973,587	+		DZA65_RS13850	0.44	+0.0
2,973,587	+		DZA65_RS13850	0.44	-0.4
2,973,588	-		DZA65_RS13850	0.44	-0.6
2,973,588	-		DZA65_RS13850	0.44	+1.0
2,973,588	-		DZA65_RS13850	0.44	+0.4
2,973,588	-		DZA65_RS13850	0.44	+0.4
2,973,588	-		DZA65_RS13850	0.44	-0.2
2,973,588	-		DZA65_RS13850	0.44	+0.6
2,973,588	-		DZA65_RS13850	0.44	-0.4
2,973,588	-		DZA65_RS13850	0.44	-0.3
2,973,588	-		DZA65_RS13850	0.44	-1.6
2,973,588	-		DZA65_RS13850	0.44	-0.6
2,973,588	-		DZA65_RS13850	0.44	+1.2
2,973,588	-		DZA65_RS13850	0.44	-0.2
2,973,592	+		DZA65_RS13850	0.44	+0.4
2,973,592	+		DZA65_RS13850	0.44	+0.0
2,973,593	-		DZA65_RS13850	0.45	-0.6
2,973,593	-		DZA65_RS13850	0.45	-2.1
2,973,593	-		DZA65_RS13850	0.45	+0.6
2,973,593	-		DZA65_RS13850	0.45	+1.4
2,973,634	-		DZA65_RS13850	0.48	+0.4
2,973,804	-		DZA65_RS13850	0.63	+0.4
2,973,804	-		DZA65_RS13850	0.63	+0.6
2,973,804	-		DZA65_RS13850	0.63	-0.6