Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13325

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
2,850,019	+				-2.3
2,850,083	+				+0.3
2,850,084	-				+0.6
2,850,084	-				+1.3
2,850,084	-				-2.1
2,850,095	+				-0.5
2,850,096	-				-1.2
2,850,096	-				+0.1
2,850,174	+		DZA65_RS13315	0.19	-2.2
2,850,231	+		DZA65_RS13315	0.34	-1.5
2,850,231	+		DZA65_RS13315	0.34	-0.9
2,850,232	-		DZA65_RS13315	0.34	-0.9
2,850,232	-		DZA65_RS13315	0.34	-1.5
2,850,232	-		DZA65_RS13315	0.34	-1.7
2,850,232	-		DZA65_RS13315	0.34	+1.3
2,850,232	-		DZA65_RS13315	0.34	+1.1
2,850,234	+		DZA65_RS13315	0.34	+1.9
2,850,234	+		DZA65_RS13315	0.34	-1.0
2,850,234	+		DZA65_RS13315	0.34	-0.6
2,850,234	+		DZA65_RS13315	0.34	-0.5
2,850,292	-		DZA65_RS13315	0.49	-0.0
2,850,292	-		DZA65_RS13315	0.49	-0.9
2,850,292	-		DZA65_RS13315	0.49	+0.8
2,850,292	-		DZA65_RS13315	0.49	-0.4
2,850,378	+		DZA65_RS13315	0.70	+0.8
2,850,381	+		DZA65_RS13315	0.71	-1.0
2,850,381	+		DZA65_RS13315	0.71	+0.1
2,850,381	+		DZA65_RS13315	0.71	+0.1
2,850,381	+		DZA65_RS13315	0.71	+0.0
2,850,381	+		DZA65_RS13315	0.71	-0.1
2,850,382	-		DZA65_RS13315	0.71	+0.7
2,850,382	-		DZA65_RS13315	0.71	-1.4
2,850,382	-		DZA65_RS13315	0.71	+0.0
2,850,413	+		DZA65_RS13315	0.79	-0.1
2,850,413	+		DZA65_RS13315	0.79	+0.2
2,850,470	+				-0.7
2,850,471	-				+0.5
2,850,471	-				-0.5
2,850,640	+		DZA65_RS13320	0.17	-0.2
2,850,673	+		DZA65_RS13320	0.25	+0.6
2,850,749	+		DZA65_RS13320	0.43	-0.4
2,850,780	+		DZA65_RS13320	0.50	+0.3
2,850,781	-		DZA65_RS13320	0.50	-1.3
2,850,862	+		DZA65_RS13320	0.69	-0.1
2,850,967	+				-2.8
2,850,967	+				+0.3
2,850,967	+				+0.3
2,850,971	+				-0.9
2,850,971	+				-0.8
2,850,971	+				+0.0
2,850,971	+				-0.9
2,850,972	-				-0.9
2,850,972	-				-1.0
2,850,972	-				-0.7
2,850,972	-				-1.1
2,850,972	-				-2.0
2,850,976	+				+0.3
2,850,976	+				+1.1
2,850,976	+				-0.4
2,850,977	-				-1.1
2,850,977	-				+1.3
2,850,977	-				+0.2
2,850,977	-				+0.3
2,851,071	-				-1.1
2,851,133	+				-0.3
2,851,133	+				-0.7
2,851,133	+				-0.2
2,851,133	+				-0.0
2,851,133	+				-0.7
2,851,133	+				+0.3
2,851,133	+				+0.3
2,851,133	+				+0.3
2,851,133	+				-1.2
2,851,133	+				+0.0
2,851,133	+				-1.0
2,851,133	+				-1.7
2,851,134	-				+0.1
2,851,134	-				+0.1
2,851,134	-				-0.7
2,851,134	-				-1.1
2,851,134	-				-2.8
2,851,134	-				-0.7
2,851,134	-				-0.4
2,851,134	-				-2.2
2,851,134	-				+0.5
2,851,134	-				-0.3
2,851,134	-				-0.5
2,851,134	-				-1.7
2,851,134	-				-1.2
2,851,134	-				-2.7
2,851,134	-				-1.7
2,851,134	-				-1.0
2,851,134	-				+0.9
2,851,175	+				-1.0
2,851,175	+				+0.8
2,851,175	+				+0.9
2,851,176	-				-0.7
2,851,176	-				-1.2
2,851,176	-				-2.2
2,851,176	-				-0.2
2,851,176	-				-1.1
2,851,176	-				-0.4
2,851,288	-				+0.8
2,851,304	+		DZA65_RS13325	0.10	-2.4
2,851,305	-		DZA65_RS13325	0.10	-0.7
2,851,652	+		DZA65_RS13325	0.22	+0.7
2,851,652	+		DZA65_RS13325	0.22	+0.9
2,851,652	+		DZA65_RS13325	0.22	-1.5
2,851,652	+		DZA65_RS13325	0.22	-2.5
2,851,653	-		DZA65_RS13325	0.22	-1.4
2,851,655	+		DZA65_RS13325	0.22	+0.4
2,851,655	+		DZA65_RS13325	0.22	+0.5
2,851,656	-		DZA65_RS13325	0.22	-0.1
2,851,662	+		DZA65_RS13325	0.22	+0.1
2,851,789	+		DZA65_RS13325	0.26	+0.4
2,851,919	+		DZA65_RS13325	0.30	-1.7
2,851,919	+		DZA65_RS13325	0.30	-1.4
2,851,953	-		DZA65_RS13325	0.31	+0.2
2,851,953	-		DZA65_RS13325	0.31	+0.3
2,851,953	-		DZA65_RS13325	0.31	-0.5
2,852,010	+		DZA65_RS13325	0.33	-0.4
2,852,010	+		DZA65_RS13325	0.33	+0.3
2,852,010	+		DZA65_RS13325	0.33	-0.1
2,852,011	-		DZA65_RS13325	0.33	-1.5
2,852,011	-		DZA65_RS13325	0.33	-1.7
2,852,072	+		DZA65_RS13325	0.35	+1.3
2,852,241	+		DZA65_RS13325	0.41	-0.6
2,852,241	+		DZA65_RS13325	0.41	-0.8
2,852,242	-		DZA65_RS13325	0.41	-1.1
2,852,242	-		DZA65_RS13325	0.41	+0.2
2,852,242	-		DZA65_RS13325	0.41	-1.4
2,852,295	+		DZA65_RS13325	0.43	-1.7
2,852,372	+		DZA65_RS13325	0.45	-0.4
2,852,372	+		DZA65_RS13325	0.45	+0.3
2,852,372	+		DZA65_RS13325	0.45	+1.6
2,852,372	+		DZA65_RS13325	0.45	+0.1
2,852,372	+		DZA65_RS13325	0.45	-0.7
2,852,373	-		DZA65_RS13325	0.45	+0.7
2,852,373	-		DZA65_RS13325	0.45	-0.5
2,852,498	+		DZA65_RS13325	0.49	-1.2
2,852,498	+		DZA65_RS13325	0.49	-0.4
2,852,498	+		DZA65_RS13325	0.49	-1.5
2,852,498	+		DZA65_RS13325	0.49	-0.7
2,852,498	+		DZA65_RS13325	0.49	-0.7
2,852,498	+		DZA65_RS13325	0.49	-0.5
2,852,499	-		DZA65_RS13325	0.49	+0.3
2,852,499	-		DZA65_RS13325	0.49	-2.0
2,852,499	-		DZA65_RS13325	0.49	-1.2
2,852,529	-		DZA65_RS13325	0.50	-1.2
2,852,529	-		DZA65_RS13325	0.50	-0.9
2,852,576	+		DZA65_RS13325	0.52	-1.0
2,852,577	-		DZA65_RS13325	0.52	-0.2
2,852,577	-		DZA65_RS13325	0.52	+0.3
2,852,577	-		DZA65_RS13325	0.52	-1.0
2,852,646	+		DZA65_RS13325	0.54	+1.1
2,852,647	-		DZA65_RS13325	0.54	+0.8
2,852,647	-		DZA65_RS13325	0.54	+0.3
2,852,647	-		DZA65_RS13325	0.54	+2.3
2,852,647	-		DZA65_RS13325	0.54	-0.7
2,852,702	+		DZA65_RS13325	0.56	+0.3
2,852,703	-		DZA65_RS13325	0.56	-0.1
2,852,726	-		DZA65_RS13325	0.57	-0.6
2,852,747	+		DZA65_RS13325	0.57	-0.7
2,852,747	+		DZA65_RS13325	0.57	-1.3
2,852,748	-		DZA65_RS13325	0.57	-0.2
2,852,748	-		DZA65_RS13325	0.57	-1.0
2,852,748	-		DZA65_RS13325	0.57	+0.3
2,852,855	+		DZA65_RS13325	0.61	+0.3
2,852,856	-		DZA65_RS13325	0.61	+0.9
2,852,856	-		DZA65_RS13325	0.61	+0.0
2,852,859	+		DZA65_RS13325	0.61	-0.2
2,852,859	+		DZA65_RS13325	0.61	+1.1
2,852,860	-		DZA65_RS13325	0.61	-0.8
2,852,860	-		DZA65_RS13325	0.61	-0.4
2,852,860	-		DZA65_RS13325	0.61	-1.7
2,852,860	-		DZA65_RS13325	0.61	+1.9
2,852,860	-		DZA65_RS13325	0.61	-0.7
2,853,176	+		DZA65_RS13325	0.71	-0.8
2,853,176	+		DZA65_RS13325	0.71	-0.1
2,853,176	+		DZA65_RS13325	0.71	+0.3
2,853,176	+		DZA65_RS13325	0.71	-2.5
2,853,176	+		DZA65_RS13325	0.71	-0.9
2,853,176	+		DZA65_RS13325	0.71	-0.4
2,853,176	+		DZA65_RS13325	0.71	-0.2
2,853,177	-		DZA65_RS13325	0.71	-1.2
2,853,177	-		DZA65_RS13325	0.71	+0.3
2,853,298	-		DZA65_RS13325	0.75	-0.7
2,853,401	-		DZA65_RS13325	0.79	-1.2
2,853,410	+		DZA65_RS13325	0.79	-0.2
2,853,411	-		DZA65_RS13325	0.79	-1.5
2,853,411	-		DZA65_RS13325	0.79	-1.1
2,853,411	-		DZA65_RS13325	0.79	+1.3
2,853,411	-		DZA65_RS13325	0.79	-0.5
2,853,520	+		DZA65_RS13325	0.83	+1.1
2,853,520	+		DZA65_RS13325	0.83	-0.5
2,853,520	+		DZA65_RS13325	0.83	-0.7
2,853,520	+		DZA65_RS13325	0.83	-0.5
2,853,520	+		DZA65_RS13325	0.83	-0.7
2,853,520	+		DZA65_RS13325	0.83	+0.3
2,853,521	-		DZA65_RS13325	0.83	+0.3
2,853,521	-				-1.7
2,853,521	-		DZA65_RS13325	0.83	+0.0
2,853,521	-		DZA65_RS13325	0.83	+0.3
2,853,645	+		DZA65_RS13325	0.87	-0.8
2,853,645	+		DZA65_RS13325	0.87	+0.0
2,853,645	+		DZA65_RS13325	0.87	-1.2
2,853,646	-		DZA65_RS13325	0.87	-3.2
2,853,646	-		DZA65_RS13325	0.87	-1.2
2,853,646	-		DZA65_RS13325	0.87	-2.0
2,853,650	+		DZA65_RS13325	0.87	-1.2
2,853,651	-		DZA65_RS13325	0.87	-0.8
2,853,724	-		DZA65_RS13325	0.89	-0.5
2,853,735	-		DZA65_RS13325	0.90	+1.9
2,853,735	-		DZA65_RS13325	0.90	-2.5
2,853,744	+		DZA65_RS13325	0.90	-0.7
2,853,744	+		DZA65_RS13325	0.90	+0.3
2,853,744	+		DZA65_RS13325	0.90	-1.0
2,853,744	+		DZA65_RS13325	0.90	+1.3
2,853,745	-				-0.1
2,853,745	-				-0.5
2,853,745	-				-1.8
2,853,745	-				+0.8
2,853,745	-				-2.0
2,853,908	+				-0.7
2,853,908	+				-0.2
2,853,908	+				-0.4
2,853,909	-				-1.7
2,853,909	-				-1.3
2,853,909	-				-0.1
2,853,909	-				-0.7
2,853,909	-				-0.7
2,853,909	-				-1.2
2,853,909	-				+0.3
2,853,912	+				-1.9
2,853,912	+				+1.9
2,853,912	+				-2.2
2,853,912	+				-1.4
2,853,912	+				-1.9
2,853,912	+				+1.3
2,853,912	+				+0.3
2,853,912	+				+0.3
2,853,912	+				-1.7
2,853,913	-				+1.7
2,853,913	-				-0.1
2,853,913	-				+0.3
2,853,913	-				+0.8
2,853,913	-				+0.9
2,853,913	-				-1.8
2,853,913	-				-1.1
2,853,913	-				+0.6
2,853,913	-				+0.3
2,853,913	-				+1.1
2,853,913	-				-0.2
2,853,913	-				-2.1
2,853,918	+				-0.4
2,853,995	-				-0.7
2,854,002	+				-0.5
2,854,002	+				-1.2
2,854,003	-				-2.4
2,854,003	-				-0.1
2,854,003	-				-0.1
2,854,003	-				-0.8
2,854,051	+				+1.1
2,854,051	+				-0.9
2,854,051	+				-0.2
2,854,051	+				-1.5
2,854,051	+				-0.7
2,854,051	+				-0.2
2,854,051	+				-0.8
2,854,051	+				+0.1
2,854,052	-				-1.8
2,854,052	-				-2.2
2,854,052	-				+0.6
2,854,052	-				-1.7
2,854,052	-				-3.2
2,854,052	-				+0.8
2,854,052	-				-1.0
2,854,052	-				-1.7
2,854,052	-				-1.8
2,854,052	-				-1.0
2,854,052	-				-1.0
2,854,052	-				-0.7
2,854,052	-				+0.3
2,854,090	-				-0.5
2,854,090	-				-1.0
2,854,090	-				+1.3
2,854,094	+				-1.2
2,854,094	+				-0.4
2,854,094	+				-0.9
2,854,094	+				-0.4
2,854,094	+				+0.3
2,854,094	+				-2.2
2,854,094	+				-0.8
2,854,095	-				-0.6
2,854,095	-				+0.1
2,854,095	-				-0.2
2,854,109	+				-2.1
2,854,109	+				-0.2
2,854,109	+				-0.3
2,854,110	-				+0.8
2,854,110	-				+2.3
2,854,296	+				-0.1
2,854,308	+				+0.3
2,854,322	+				-0.7
2,854,370	+				+1.0
2,854,388	+				-0.7
2,854,389	-				+1.5
2,854,389	-				-0.2
2,854,396	+				-1.1
2,854,396	+				+0.3
2,854,397	-				+1.7
2,854,467	+				-2.0
2,854,468	-				+1.1
2,854,468	-				+0.5
2,854,468	-				-0.1
2,854,473	+				+0.0
2,854,512	+				-2.5
2,854,536	+		DZA65_RS13330	0.12	-2.1
2,854,537	-		DZA65_RS13330	0.12	+0.3
2,854,566	-		DZA65_RS13330	0.15	+1.2
2,854,574	+		DZA65_RS13330	0.15	+0.1
2,854,575	-				-0.4
2,854,671	+		DZA65_RS13330	0.24	-1.2
2,854,671	+		DZA65_RS13330	0.24	-0.4
2,854,671	+		DZA65_RS13330	0.24	-1.4
2,854,672	-		DZA65_RS13330	0.24	-1.4
2,854,728	+		DZA65_RS13330	0.29	-2.1
2,854,728	+		DZA65_RS13330	0.29	-1.2
2,854,728	+		DZA65_RS13330	0.29	+0.3
2,854,846	+		DZA65_RS13330	0.40	+0.3
2,854,846	+		DZA65_RS13330	0.40	-0.2
2,854,846	+		DZA65_RS13330	0.40	-0.3
2,854,846	+		DZA65_RS13330	0.40	-1.1
2,854,847	-		DZA65_RS13330	0.40	-1.7
2,854,847	-		DZA65_RS13330	0.40	+0.8
2,854,847	-		DZA65_RS13330	0.40	+0.5
2,854,847	-		DZA65_RS13330	0.40	+0.8
2,854,847	-		DZA65_RS13330	0.40	+0.3
2,854,847	-		DZA65_RS13330	0.40	-1.7
2,854,872	-		DZA65_RS13330	0.42	+0.6
2,854,872	-		DZA65_RS13330	0.42	-0.0
2,854,945	+		DZA65_RS13330	0.49	+1.1
2,854,946	-		DZA65_RS13330	0.49	-0.2