Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06140

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
1,268,708	+		DZA65_RS06130	0.83	-0.1
1,268,729	+		DZA65_RS06130	0.84	-0.7
1,268,730	-		DZA65_RS06130	0.84	+1.2
1,268,730	-		DZA65_RS06130	0.84	-0.1
1,268,852	+		DZA65_RS06130	0.88	-0.2
1,268,852	+		DZA65_RS06130	0.88	-0.7
1,268,852	+		DZA65_RS06130	0.88	-0.7
1,268,944	-				-0.4
1,268,980	+				+1.0
1,268,981	-				-0.1
1,268,981	-				+0.2
1,268,981	-				-0.5
1,268,981	-				-0.2
1,268,997	-				-0.9
1,269,081	+				+0.2
1,269,081	+				-1.0
1,269,082	-				-1.0
1,269,082	-				-1.0
1,269,082	-				+0.0
1,269,108	+				-0.6
1,269,108	+				-0.1
1,269,109	-				-1.5
1,269,109	-				-0.2
1,269,109	-				-1.1
1,269,192	+				+0.0
1,269,193	-				-2.0
1,269,226	+				+0.0
1,269,226	+				+0.9
1,269,226	+				+1.2
1,269,226	+				-0.4
1,269,226	+				+0.0
1,269,226	+				+0.9
1,269,226	+				-0.1
1,269,227	-				+0.3
1,269,227	-				-0.4
1,269,227	-				+1.0
1,269,227	-				-0.7
1,269,259	+				-2.0
1,269,260	-				+1.0
1,269,260	-				-0.1
1,269,260	-				+0.0
1,269,260	-				-0.1
1,269,270	+				+1.4
1,269,274	+				-0.0
1,269,275	-				+0.6
1,269,285	+				-0.4
1,269,289	+				+0.0
1,269,289	+				-0.6
1,269,290	-				+0.4
1,269,290	-				+0.0
1,269,300	+				-0.0
1,269,304	+				+0.4
1,269,304	+				+0.0
1,269,320	-				+0.6
1,269,442	-		DZA65_RS06135	0.55	-1.7
1,269,525	-				-0.7
1,269,525	-				+1.0
1,269,554	+				-0.8
1,269,561	+				-1.2
1,269,561	+				-0.4
1,269,561	+				-0.4
1,269,561	+				-1.0
1,269,561	+				+1.6
1,269,561	+				-2.7
1,269,562	-				-1.2
1,269,562	-				+0.0
1,269,562	-				+0.0
1,269,595	+				-2.4
1,269,596	-				-0.5
1,269,785	-		DZA65_RS06140	0.36	-0.4
1,269,871	-		DZA65_RS06140	0.52	-0.2
1,269,936	+		DZA65_RS06140	0.64	-0.6
1,269,936	+		DZA65_RS06140	0.64	+0.3
1,269,936	+		DZA65_RS06140	0.64	+1.6
1,269,936	+		DZA65_RS06140	0.64	+0.2
1,269,936	+		DZA65_RS06140	0.64	+1.0
1,269,937	-		DZA65_RS06140	0.64	+0.2
1,269,937	-		DZA65_RS06140	0.64	+0.5
1,269,937	-		DZA65_RS06140	0.64	+0.1
1,269,937	-		DZA65_RS06140	0.64	-0.2
1,269,937	-		DZA65_RS06140	0.64	+2.4
1,269,937	-		DZA65_RS06140	0.64	+0.6
1,269,937	-		DZA65_RS06140	0.64	+0.6
1,269,937	-		DZA65_RS06140	0.64	+0.3
1,269,937	-		DZA65_RS06140	0.64	+0.4
1,269,937	-		DZA65_RS06140	0.64	+0.2
1,269,937	-		DZA65_RS06140	0.64	+0.6
1,269,937	-		DZA65_RS06140	0.64	+1.2
1,269,937	-		DZA65_RS06140	0.64	-0.8
1,269,940	+		DZA65_RS06140	0.65	-0.4
1,269,940	+		DZA65_RS06140	0.65	+1.2
1,269,940	+		DZA65_RS06140	0.65	+1.0
1,269,940	+		DZA65_RS06140	0.65	-1.0
1,269,940	+		DZA65_RS06140	0.65	-1.4
1,269,940	+		DZA65_RS06140	0.65	-0.4
1,269,940	+		DZA65_RS06140	0.65	-0.0
1,269,940	+		DZA65_RS06140	0.65	+0.8
1,269,940	+		DZA65_RS06140	0.65	+1.9
1,269,940	+		DZA65_RS06140	0.65	+0.2
1,269,941	-		DZA65_RS06140	0.65	-1.2
1,269,941	-		DZA65_RS06140	0.65	-1.4
1,269,941	-		DZA65_RS06140	0.65	-1.0
1,269,941	-		DZA65_RS06140	0.65	-1.4
1,269,941	-		DZA65_RS06140	0.65	+0.6
1,269,941	-		DZA65_RS06140	0.65	+0.2
1,269,941	-		DZA65_RS06140	0.65	+0.6
1,269,941	-		DZA65_RS06140	0.65	+1.0
1,269,941	-		DZA65_RS06140	0.65	-0.6
1,269,941	-		DZA65_RS06140	0.65	+0.0
1,269,958	+		DZA65_RS06140	0.68	-0.5
1,269,958	+		DZA65_RS06140	0.68	-0.2
1,269,958	+		DZA65_RS06140	0.68	+1.1
1,269,958	+		DZA65_RS06140	0.68	-0.1
1,269,958	+		DZA65_RS06140	0.68	+0.1
1,269,959	-		DZA65_RS06140	0.68	-0.4
1,269,959	-		DZA65_RS06140	0.68	+1.3
1,269,959	-		DZA65_RS06140	0.68	-1.4
1,269,962	+		DZA65_RS06140	0.69	+0.6
1,269,962	+		DZA65_RS06140	0.69	-1.1
1,269,962	+		DZA65_RS06140	0.69	-1.0
1,269,962	+		DZA65_RS06140	0.69	+0.6
1,269,962	+		DZA65_RS06140	0.69	+0.4
1,269,962	+		DZA65_RS06140	0.69	+0.4
1,269,963	-		DZA65_RS06140	0.69	-0.1
1,269,963	-		DZA65_RS06140	0.69	+0.9
1,269,963	-		DZA65_RS06140	0.69	-0.4
1,269,963	-		DZA65_RS06140	0.69	-0.2
1,269,982	+		DZA65_RS06140	0.73	+1.0
1,270,003	+		DZA65_RS06140	0.77	+0.5
1,270,082	+				-0.8
1,270,082	+				+1.0
1,270,082	+				-1.2
1,270,083	-				-0.2
1,270,102	-				-0.6
1,270,160	+				+0.2
1,270,170	+				-0.4
1,270,171	-				-0.5
1,270,171	-				-0.2
1,270,171	-				-1.4
1,270,255	+				+1.6
1,270,267	-				-0.7
1,270,267	-				-0.3
1,270,271	+				+0.4
1,270,271	+				+0.0
1,270,271	+				+0.4
1,270,271	+				+0.2
1,270,271	+				+0.3
1,270,271	+				-0.2
1,270,271	+				+0.3
1,270,271	+				+1.0
1,270,271	+				+0.2
1,270,271	+				+1.4
1,270,272	-				-0.7
1,270,272	-				-0.5
1,270,272	-				-0.4
1,270,272	-				-0.6
1,270,272	-				+0.0
1,270,272	-				-0.6
1,270,272	-				-0.6
1,270,272	-				+0.3
1,270,272	-				+0.6
1,270,336	+				+0.0
1,270,336	+				-1.5
1,270,371	+				-0.7
1,270,371	+				-1.0
1,270,371	+				+0.6
1,270,372	-				-0.2
1,270,372	-				+0.0
1,270,372	-				+0.3
1,270,509	+		DZA65_RS06145	0.38	+0.6
1,270,522	-		DZA65_RS06145	0.42	-0.1
1,270,617	-		DZA65_RS06145	0.67	+0.6
1,270,700	+				+0.6
1,270,700	+				+0.0
1,270,700	+				+0.5
1,270,700	+				+1.2
1,270,700	+				-0.6
1,270,701	-				-1.4
1,270,701	-				-1.0
1,270,701	-				-0.4
1,270,701	-				-0.5
1,270,701	-				-1.0
1,270,745	-				-1.7
1,270,892	+				+1.3
1,270,902	+				-2.0
1,270,917	+				-0.4
1,270,917	+				-1.0
1,270,918	-				-0.5
1,270,918	-				-1.4
1,270,918	-				-1.0
1,270,956	+				-1.1
1,270,957	-				-0.4
1,270,965	+				+1.3
1,270,965	+				+0.4
1,270,991	+		DZA65_RS06150	0.13	-0.1
1,270,991	+		DZA65_RS06150	0.13	-0.4
1,270,992	-		DZA65_RS06150	0.13	-0.2
1,271,036	-		DZA65_RS06150	0.21	-0.1