Experiment: M9+polygalacturonate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00640 and DZA65_RS00645 are separated by 19 nucleotides DZA65_RS00645 and DZA65_RS00650 are separated by 19 nucleotides DZA65_RS00650 and DZA65_RS00655 are separated by 89 nucleotides DZA65_RS00655 and DZA65_RS00660 overlap by 32 nucleotides
DZA65_RS00640: DZA65_RS00640 - hypothetical protein, at 149,119 to 149,883
_RS00640
DZA65_RS00645: DZA65_RS00645 - hypothetical protein, at 149,903 to 150,667
_RS00645
DZA65_RS00650: DZA65_RS00650 - hypothetical protein, at 150,687 to 151,449
_RS00650
DZA65_RS00655: DZA65_RS00655 - ABC transporter ATP-binding protein, at 151,539 to 152,240
_RS00655
DZA65_RS00660: DZA65_RS00660 - ABC transporter permease, at 152,209 to 153,453
_RS00660
Position (kb) 150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 149.704 kb on + strand, within DZA65_RS00640 at 149.704 kb on - strand, within DZA65_RS00640 at 149.705 kb on - strand, within DZA65_RS00640 at 149.723 kb on + strand, within DZA65_RS00640 at 149.750 kb on - strand, within DZA65_RS00640 at 149.903 kb on - strand at 150.319 kb on + strand, within DZA65_RS00645 at 150.323 kb on + strand, within DZA65_RS00645 at 150.323 kb on + strand, within DZA65_RS00645 at 150.343 kb on + strand at 150.343 kb on + strand, within DZA65_RS00645 at 150.343 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.380 kb on + strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.381 kb on - strand, within DZA65_RS00645 at 150.434 kb on + strand, within DZA65_RS00645 at 150.434 kb on + strand, within DZA65_RS00645 at 150.434 kb on + strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.435 kb on - strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.463 kb on + strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.464 kb on - strand, within DZA65_RS00645 at 150.467 kb on + strand, within DZA65_RS00645 at 150.468 kb on - strand, within DZA65_RS00645 at 150.468 kb on - strand, within DZA65_RS00645 at 150.489 kb on - strand, within DZA65_RS00645 at 150.489 kb on - strand, within DZA65_RS00645 at 150.507 kb on + strand, within DZA65_RS00645 at 150.508 kb on - strand, within DZA65_RS00645 at 150.533 kb on + strand, within DZA65_RS00645 at 150.533 kb on + strand, within DZA65_RS00645 at 151.105 kb on + strand, within DZA65_RS00650 at 151.105 kb on + strand, within DZA65_RS00650 at 151.162 kb on + strand, within DZA65_RS00650 at 151.162 kb on + strand, within DZA65_RS00650 at 151.162 kb on + strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.163 kb on - strand, within DZA65_RS00650 at 151.206 kb on - strand, within DZA65_RS00650 at 151.216 kb on + strand, within DZA65_RS00650 at 151.216 kb on + strand, within DZA65_RS00650 at 151.216 kb on + strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.217 kb on - strand, within DZA65_RS00650 at 151.224 kb on + strand, within DZA65_RS00650 at 151.249 kb on + strand, within DZA65_RS00650 at 151.249 kb on + strand, within DZA65_RS00650 at 151.249 kb on + strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.250 kb on - strand, within DZA65_RS00650 at 151.270 kb on + strand, within DZA65_RS00650 at 151.271 kb on - strand, within DZA65_RS00650 at 151.271 kb on - strand, within DZA65_RS00650 at 151.416 kb on - strand at 151.493 kb on + strand at 151.493 kb on + strand at 151.493 kb on + strand at 151.493 kb on + strand at 151.494 kb on - strand at 151.494 kb on - strand at 151.494 kb on - strand at 151.494 kb on - strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.497 kb on + strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.498 kb on - strand at 151.509 kb on - strand at 151.574 kb on - strand at 151.593 kb on + strand at 151.594 kb on - strand at 151.610 kb on + strand, within DZA65_RS00655 at 151.610 kb on + strand, within DZA65_RS00655 at 151.649 kb on + strand, within DZA65_RS00655 at 151.691 kb on + strand, within DZA65_RS00655 at 151.692 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.698 kb on - strand, within DZA65_RS00655 at 151.806 kb on - strand, within DZA65_RS00655 at 151.825 kb on + strand, within DZA65_RS00655 at 151.825 kb on + strand, within DZA65_RS00655 at 151.826 kb on - strand, within DZA65_RS00655 at 151.891 kb on - strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.898 kb on + strand, within DZA65_RS00655 at 151.899 kb on - strand, within DZA65_RS00655 at 151.899 kb on - strand, within DZA65_RS00655 at 151.899 kb on - strand at 151.900 kb on + strand, within DZA65_RS00655 at 151.901 kb on - strand, within DZA65_RS00655 at 151.901 kb on - strand, within DZA65_RS00655 at 151.901 kb on - strand, within DZA65_RS00655 at 152.073 kb on - strand, within DZA65_RS00655 at 152.113 kb on + strand, within DZA65_RS00655 at 152.113 kb on + strand, within DZA65_RS00655 at 152.152 kb on + strand, within DZA65_RS00655 at 152.257 kb on + strand at 152.258 kb on - strand at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.339 kb on + strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.340 kb on - strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.343 kb on + strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.344 kb on - strand, within DZA65_RS00660 at 152.410 kb on - strand, within DZA65_RS00660 at 152.417 kb on + strand, within DZA65_RS00660 at 152.418 kb on - strand, within DZA65_RS00660 at 152.418 kb on - strand, within DZA65_RS00660 at 152.418 kb on - strand, within DZA65_RS00660 at 152.427 kb on + strand, within DZA65_RS00660 at 152.427 kb on + strand, within DZA65_RS00660 at 152.428 kb on - strand, within DZA65_RS00660
Per-strain Table
Position Strand Gene LocusTag Fraction M9+polygalacturonate remove 149,704 + DZA65_RS00640 0.76 +1.1 149,704 - DZA65_RS00640 0.76 +0.8 149,705 - DZA65_RS00640 0.77 -0.7 149,723 + DZA65_RS00640 0.79 +0.1 149,750 - DZA65_RS00640 0.82 -0.2 149,903 - -1.5 150,319 + DZA65_RS00645 0.54 +0.3 150,323 + DZA65_RS00645 0.55 +0.1 150,323 + DZA65_RS00645 0.55 -0.5 150,343 + +0.1 150,343 + DZA65_RS00645 0.58 +0.6 150,343 + DZA65_RS00645 0.58 -0.5 150,380 + DZA65_RS00645 0.62 -0.5 150,380 + DZA65_RS00645 0.62 -0.0 150,380 + DZA65_RS00645 0.62 -0.2 150,380 + DZA65_RS00645 0.62 -0.5 150,381 - DZA65_RS00645 0.62 -0.3 150,381 - DZA65_RS00645 0.62 -0.1 150,381 - DZA65_RS00645 0.62 +0.9 150,381 - DZA65_RS00645 0.62 -1.5 150,381 - DZA65_RS00645 0.62 +1.1 150,434 + DZA65_RS00645 0.69 -0.4 150,434 + DZA65_RS00645 0.69 +0.6 150,434 + DZA65_RS00645 0.69 +2.4 150,435 - DZA65_RS00645 0.70 +1.1 150,435 - DZA65_RS00645 0.70 +0.6 150,435 - DZA65_RS00645 0.70 +0.7 150,435 - DZA65_RS00645 0.70 +0.1 150,435 - DZA65_RS00645 0.70 +1.1 150,435 - DZA65_RS00645 0.70 -1.6 150,435 - DZA65_RS00645 0.70 +0.6 150,435 - DZA65_RS00645 0.70 +1.1 150,435 - DZA65_RS00645 0.70 -0.5 150,463 + DZA65_RS00645 0.73 -0.8 150,463 + DZA65_RS00645 0.73 +0.1 150,463 + DZA65_RS00645 0.73 +0.7 150,463 + DZA65_RS00645 0.73 +0.6 150,463 + DZA65_RS00645 0.73 -0.2 150,463 + DZA65_RS00645 0.73 -1.1 150,463 + DZA65_RS00645 0.73 -0.6 150,463 + DZA65_RS00645 0.73 -0.7 150,464 - DZA65_RS00645 0.73 -0.2 150,464 - DZA65_RS00645 0.73 +1.0 150,464 - DZA65_RS00645 0.73 +0.7 150,464 - DZA65_RS00645 0.73 -0.1 150,464 - DZA65_RS00645 0.73 -1.0 150,464 - DZA65_RS00645 0.73 -0.2 150,464 - DZA65_RS00645 0.73 -0.3 150,464 - DZA65_RS00645 0.73 -3.2 150,467 + DZA65_RS00645 0.74 -0.9 150,468 - DZA65_RS00645 0.74 -2.1 150,468 - DZA65_RS00645 0.74 +0.3 150,489 - DZA65_RS00645 0.77 +0.5 150,489 - DZA65_RS00645 0.77 -1.8 150,507 + DZA65_RS00645 0.79 +0.9 150,508 - DZA65_RS00645 0.79 -0.2 150,533 + DZA65_RS00645 0.82 +2.1 150,533 + DZA65_RS00645 0.82 +0.1 151,105 + DZA65_RS00650 0.55 +0.1 151,105 + DZA65_RS00650 0.55 -0.8 151,162 + DZA65_RS00650 0.62 +0.4 151,162 + DZA65_RS00650 0.62 -1.9 151,162 + DZA65_RS00650 0.62 -2.2 151,163 - DZA65_RS00650 0.62 +0.7 151,163 - DZA65_RS00650 0.62 +0.5 151,163 - DZA65_RS00650 0.62 +0.1 151,163 - DZA65_RS00650 0.62 +1.1 151,163 - DZA65_RS00650 0.62 +1.1 151,163 - DZA65_RS00650 0.62 -0.1 151,163 - DZA65_RS00650 0.62 -0.6 151,163 - DZA65_RS00650 0.62 -0.5 151,163 - DZA65_RS00650 0.62 -1.1 151,206 - DZA65_RS00650 0.68 +1.4 151,216 + DZA65_RS00650 0.69 -0.2 151,216 + DZA65_RS00650 0.69 -1.3 151,216 + DZA65_RS00650 0.69 -1.5 151,217 - DZA65_RS00650 0.69 -0.2 151,217 - DZA65_RS00650 0.69 -2.2 151,217 - DZA65_RS00650 0.69 +1.9 151,217 - DZA65_RS00650 0.69 +0.4 151,217 - DZA65_RS00650 0.69 -1.7 151,224 + DZA65_RS00650 0.70 -1.2 151,249 + DZA65_RS00650 0.74 -1.2 151,249 + DZA65_RS00650 0.74 +0.1 151,249 + DZA65_RS00650 0.74 -0.5 151,250 - DZA65_RS00650 0.74 +0.1 151,250 - DZA65_RS00650 0.74 +0.1 151,250 - DZA65_RS00650 0.74 +0.8 151,250 - DZA65_RS00650 0.74 -1.4 151,250 - DZA65_RS00650 0.74 +1.7 151,250 - DZA65_RS00650 0.74 +0.3 151,250 - DZA65_RS00650 0.74 +1.4 151,270 + DZA65_RS00650 0.76 -0.1 151,271 - DZA65_RS00650 0.77 +0.5 151,271 - DZA65_RS00650 0.77 -1.7 151,416 - -0.5 151,493 + +1.1 151,493 + +0.6 151,493 + -0.5 151,493 + +2.3 151,494 - +0.3 151,494 - -0.6 151,494 - -0.9 151,494 - -0.0 151,497 + -0.9 151,497 + +0.9 151,497 + -0.2 151,497 + -0.7 151,497 + -0.0 151,497 + -0.4 151,497 + -0.4 151,498 - -0.7 151,498 - -0.3 151,498 - +1.1 151,498 - -0.6 151,498 - +0.8 151,509 - +1.3 151,574 - +0.1 151,593 + +0.3 151,594 - -0.2 151,610 + DZA65_RS00655 0.10 -2.1 151,610 + DZA65_RS00655 0.10 +1.3 151,649 + DZA65_RS00655 0.16 +3.4 151,691 + DZA65_RS00655 0.22 +0.1 151,692 - DZA65_RS00655 0.22 +1.1 151,698 - DZA65_RS00655 0.23 +0.1 151,698 - DZA65_RS00655 0.23 -0.1 151,698 - DZA65_RS00655 0.23 +0.3 151,698 - DZA65_RS00655 0.23 -0.7 151,806 - DZA65_RS00655 0.38 -0.8 151,825 + DZA65_RS00655 0.41 +0.8 151,825 + DZA65_RS00655 0.41 -0.7 151,826 - DZA65_RS00655 0.41 +0.1 151,891 - DZA65_RS00655 0.50 -0.4 151,898 + DZA65_RS00655 0.51 +0.3 151,898 + DZA65_RS00655 0.51 +0.4 151,898 + DZA65_RS00655 0.51 -1.6 151,898 + DZA65_RS00655 0.51 -2.1 151,898 + DZA65_RS00655 0.51 -1.7 151,899 - DZA65_RS00655 0.51 -0.5 151,899 - DZA65_RS00655 0.51 -1.1 151,899 - -0.1 151,900 + DZA65_RS00655 0.51 -0.9 151,901 - DZA65_RS00655 0.52 -0.5 151,901 - DZA65_RS00655 0.52 +0.8 151,901 - DZA65_RS00655 0.52 -0.1 152,073 - DZA65_RS00655 0.76 -0.2 152,113 + DZA65_RS00655 0.82 -1.7 152,113 + DZA65_RS00655 0.82 -0.0 152,152 + DZA65_RS00655 0.87 +0.7 152,257 + -0.9 152,258 - +0.7 152,339 + DZA65_RS00660 0.10 +0.9 152,339 + DZA65_RS00660 0.10 -0.1 152,339 + DZA65_RS00660 0.10 -0.4 152,339 + DZA65_RS00660 0.10 +0.3 152,339 + DZA65_RS00660 0.10 -2.1 152,339 + DZA65_RS00660 0.10 -0.1 152,340 - DZA65_RS00660 0.11 +0.5 152,340 - DZA65_RS00660 0.11 +0.6 152,340 - DZA65_RS00660 0.11 +0.5 152,340 - DZA65_RS00660 0.11 +0.4 152,340 - DZA65_RS00660 0.11 +0.3 152,343 + DZA65_RS00660 0.11 -0.6 152,343 + DZA65_RS00660 0.11 -0.7 152,343 + DZA65_RS00660 0.11 +0.7 152,343 + DZA65_RS00660 0.11 -0.1 152,343 + DZA65_RS00660 0.11 +1.1 152,343 + DZA65_RS00660 0.11 -1.5 152,344 - DZA65_RS00660 0.11 +1.2 152,344 - DZA65_RS00660 0.11 -3.1 152,344 - DZA65_RS00660 0.11 -0.2 152,344 - DZA65_RS00660 0.11 +1.9 152,344 - DZA65_RS00660 0.11 +0.9 152,344 - DZA65_RS00660 0.11 +1.1 152,344 - DZA65_RS00660 0.11 -0.7 152,410 - DZA65_RS00660 0.16 -0.3 152,417 + DZA65_RS00660 0.17 -0.4 152,418 - DZA65_RS00660 0.17 -0.4 152,418 - DZA65_RS00660 0.17 -0.6 152,418 - DZA65_RS00660 0.17 +0.2 152,427 + DZA65_RS00660 0.18 +0.9 152,427 + DZA65_RS00660 0.18 +0.2 152,428 - DZA65_RS00660 0.18 +0.1
Or see this region's nucleotide sequence