Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18190

Experiment: M9+polygalacturonate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+polygalacturonate
3,920,653	+		DZA65_RS18185	0.78	-1.3
3,920,685	+		DZA65_RS18185	0.81	-0.3
3,920,685	+		DZA65_RS18185	0.81	+0.7
3,920,685	+		DZA65_RS18185	0.81	+0.5
3,920,686	-		DZA65_RS18185	0.81	+0.4
3,920,686	-		DZA65_RS18185	0.81	+0.8
3,920,686	-		DZA65_RS18185	0.81	+1.1
3,920,686	-		DZA65_RS18185	0.81	+0.0
3,920,738	+		DZA65_RS18185	0.84	-0.0
3,920,739	-		DZA65_RS18185	0.85	-1.1
3,920,745	+		DZA65_RS18185	0.85	+0.8
3,920,745	+		DZA65_RS18185	0.85	+1.1
3,920,745	+		DZA65_RS18185	0.85	+0.9
3,920,745	+		DZA65_RS18185	0.85	-0.4
3,920,745	+		DZA65_RS18185	0.85	-0.1
3,920,746	-		DZA65_RS18185	0.85	-0.0
3,920,746	-		DZA65_RS18185	0.85	-1.3
3,920,746	-		DZA65_RS18185	0.85	-2.5
3,920,746	-		DZA65_RS18185	0.85	-0.7
3,920,746	-		DZA65_RS18185	0.85	+0.3
3,920,746	-		DZA65_RS18185	0.85	+0.1
3,920,772	+		DZA65_RS18185	0.87	-1.1
3,920,772	+		DZA65_RS18185	0.87	-0.9
3,920,772	+		DZA65_RS18185	0.87	-0.6
3,920,772	+		DZA65_RS18185	0.87	-1.3
3,920,772	+		DZA65_RS18185	0.87	+0.0
3,920,772	+		DZA65_RS18185	0.87	-1.9
3,920,773	-		DZA65_RS18185	0.87	-0.7
3,920,773	-				+0.2
3,920,773	-		DZA65_RS18185	0.87	+0.4
3,920,773	-		DZA65_RS18185	0.87	+0.1
3,920,773	-		DZA65_RS18185	0.87	+0.4
3,920,773	-		DZA65_RS18185	0.87	-0.4
3,920,791	+		DZA65_RS18185	0.88	-0.3
3,920,792	-		DZA65_RS18185	0.88	-0.9
3,920,851	-				-0.1
3,920,851	-				+0.2
3,920,851	-				-0.2
3,920,870	-				-0.1
3,920,892	+				-2.3
3,920,915	+				-0.3
3,920,915	+				+1.3
3,920,915	+				-0.3
3,920,915	+				-0.1
3,920,916	-				-1.3
3,920,918	+				+0.5
3,920,919	-				+0.4
3,920,919	-				+0.6
3,920,919	-				+0.7
3,920,941	+				-0.3
3,920,959	-				+0.7
3,920,959	-				+0.5
3,920,959	-				-0.3
3,920,976	-				+1.2
3,920,994	-				+0.1
3,921,006	+				-0.2
3,921,006	+				+0.3
3,921,006	+				-0.0
3,921,006	+				+0.7
3,921,006	+				+0.5
3,921,007	-				+0.3
3,921,007	-				+0.5
3,921,007	-				+0.3
3,921,007	-				-2.1
3,921,007	-				+0.7
3,921,007	-				+0.4
3,921,007	-				+0.3
3,921,017	+				-0.2
3,921,121	+				+0.1
3,921,121	+				-1.0
3,921,121	+				-0.8
3,921,121	+				+0.5
3,921,122	-				+0.7
3,921,122	-				-2.7
3,921,123	+				+0.7
3,921,124	-				+0.2
3,921,301	+				-2.1
3,921,321	+				+1.1
3,921,321	+				+0.7
3,921,321	+				+0.3
3,921,321	+				+0.1
3,921,321	+				+0.2
3,921,321	+				+0.1
3,921,321	+				-0.2
3,921,321	+				+0.7
3,921,321	+				+0.4
3,921,322	-				-1.7
3,921,322	-				-0.9
3,921,406	+				+2.1
3,921,406	+				-0.9
3,921,406	+				+1.4
3,921,407	-				-0.3
3,921,408	+				+0.6
3,921,409	-				-0.5
3,921,409	-				+0.9
3,921,409	-				+0.5
3,921,430	+				-0.3
3,921,431	-				-0.9
3,921,433	+				-0.9
3,921,433	+				+1.7
3,921,434	-				-0.7
3,921,463	+				-0.3
3,921,464	-				+0.1
3,921,465	+				+0.4
3,921,465	+				+1.4
3,921,465	+				-1.7
3,921,465	+				-0.3
3,921,465	+				+0.1
3,921,466	-				+0.4
3,921,466	-				-1.7
3,921,466	-				+0.7
3,921,471	+				+1.1
3,921,472	-				+1.0
3,921,481	+				+0.8
3,921,481	+				+0.3
3,921,481	+				-0.8
3,921,482	-				+0.5
3,921,482	-				+0.4
3,921,482	-				+0.7
3,921,482	-				-0.4
3,921,482	-				+0.0
3,921,482	-				+0.1
3,921,482	-				+0.4
3,921,482	-				-2.5
3,921,482	-				+2.2
3,921,482	-				-1.3
3,921,483	+				+0.6
3,921,483	+				+0.7
3,921,483	+				-0.2
3,921,483	+				-0.7
3,921,483	+				-0.1
3,921,484	-				+2.1
3,921,484	-				-0.0
3,921,484	-				+1.1
3,921,484	-				-1.3
3,921,484	-				-0.7
3,921,484	-				-0.1
3,921,484	-				+1.7
3,921,484	-				+0.2
3,921,486	-				+0.9
3,921,486	-				-0.3
3,921,597	+				+1.1
3,921,597	+				+0.3
3,921,597	+				+0.0
3,921,597	+				-0.7
3,921,597	+				+0.7
3,921,597	+				-0.3
3,921,597	+				+0.1
3,921,597	+				-0.9
3,921,608	+				-0.6
3,921,608	+				+0.4
3,921,608	+				+0.2
3,921,613	+				+0.3
3,921,613	+				+0.1
3,921,613	+				+0.1
3,921,613	+				+0.1
3,921,613	+				+1.2
3,921,613	+				-0.1
3,921,613	+				+1.2
3,921,613	+				-0.3
3,921,613	+				+1.7
3,921,613	+				-0.0
3,921,613	+				-0.9
3,921,613	+				+0.2
3,921,613	+				-0.7
3,921,613	+				-0.1
3,921,613	+				-2.1
3,921,613	+				-0.4
3,921,613	+				+0.5
3,921,613	+				-0.1
3,921,614	-				+1.2
3,921,614	-				+0.7
3,921,614	-				+0.1
3,921,614	-				-0.9
3,921,614	-				-1.3
3,921,614	-				-0.5
3,921,614	-				-0.8
3,921,614	-				-1.3
3,921,614	-				-2.8
3,921,614	-				+1.1
3,921,614	-				+0.1
3,921,614	-				+1.4
3,921,614	-				+0.2
3,921,614	-				-1.9
3,921,614	-				+0.1
3,921,614	-				+0.3
3,921,614	-				-0.9
3,921,614	-				-0.3
3,921,614	-				+0.1
3,921,614	-				-0.9
3,921,637	+				+0.0
3,921,637	+				-0.8
3,921,638	-				-0.8
3,921,638	-				+0.2
3,921,675	-				+0.3
3,921,675	-				+0.1
3,921,675	-				-0.9
3,921,675	-				-0.3
3,921,675	-				+0.1
3,921,676	+				-0.3
3,921,676	+				-1.3
3,921,676	+				+1.0
3,921,676	+				-0.3
3,921,676	+				-2.3
3,921,676	+				+0.1
3,921,677	-				+1.7
3,921,677	-				-0.5
3,921,677	-				+0.7
3,921,677	-				-0.7
3,921,677	-				+0.5
3,921,677	-				-0.1
3,921,778	-				+0.2
3,921,778	-				-0.1
3,921,801	+		DZA65_RS18190	0.11	-0.1
3,921,801	+		DZA65_RS18190	0.11	+0.5
3,921,801	+		DZA65_RS18190	0.11	-0.6
3,921,983	+				-0.9
3,921,983	+		DZA65_RS18190	0.22	+1.7
3,921,983	+		DZA65_RS18190	0.22	-0.5
3,921,984	-		DZA65_RS18190	0.23	-2.1
3,921,999	-		DZA65_RS18190	0.23	-0.9
3,922,056	+		DZA65_RS18190	0.27	+0.2
3,922,056	+		DZA65_RS18190	0.27	+0.5
3,922,056	+		DZA65_RS18190	0.27	-0.7
3,922,056	+		DZA65_RS18190	0.27	-0.3
3,922,056	+		DZA65_RS18190	0.27	-1.8
3,922,057	-		DZA65_RS18190	0.27	-1.1
3,922,057	-		DZA65_RS18190	0.27	+0.7
3,922,057	-		DZA65_RS18190	0.27	+0.5
3,922,057	-		DZA65_RS18190	0.27	-0.6
3,922,057	-		DZA65_RS18190	0.27	-0.8
3,922,057	-		DZA65_RS18190	0.27	-0.4
3,922,057	-		DZA65_RS18190	0.27	+0.4
3,922,082	+		DZA65_RS18190	0.29	+0.7
3,922,082	+		DZA65_RS18190	0.29	-0.9
3,922,082	+		DZA65_RS18190	0.29	-0.9
3,922,082	+		DZA65_RS18190	0.29	-0.9
3,922,082	+		DZA65_RS18190	0.29	-2.1
3,922,082	+		DZA65_RS18190	0.29	+0.3
3,922,082	+		DZA65_RS18190	0.29	+0.5
3,922,082	+		DZA65_RS18190	0.29	+0.1
3,922,082	+		DZA65_RS18190	0.29	+0.2
3,922,082	+		DZA65_RS18190	0.29	+3.0
3,922,083	-		DZA65_RS18190	0.29	-0.0
3,922,083	-		DZA65_RS18190	0.29	+2.1
3,922,083	-		DZA65_RS18190	0.29	-1.7
3,922,083	-		DZA65_RS18190	0.29	-0.3
3,922,083	-		DZA65_RS18190	0.29	+1.0
3,922,083	-		DZA65_RS18190	0.29	+0.2
3,922,083	-		DZA65_RS18190	0.29	+0.5
3,922,083	-		DZA65_RS18190	0.29	-0.1
3,922,210	+		DZA65_RS18190	0.37	-1.0
3,922,211	-		DZA65_RS18190	0.37	-1.3
3,922,219	+		DZA65_RS18190	0.37	-0.3
3,922,220	-		DZA65_RS18190	0.38	-1.0
3,922,348	+		DZA65_RS18190	0.46	-0.4
3,922,348	+		DZA65_RS18190	0.46	-0.6
3,922,348	+		DZA65_RS18190	0.46	-0.1
3,922,349	-		DZA65_RS18190	0.46	-0.6
3,922,349	-		DZA65_RS18190	0.46	-0.9
3,922,447	+		DZA65_RS18190	0.52	+1.4
3,922,448	-		DZA65_RS18190	0.52	+0.7
3,922,685	+		DZA65_RS18190	0.67	-0.3
3,922,685	+		DZA65_RS18190	0.67	+0.1
3,922,685	+		DZA65_RS18190	0.67	-0.1
3,922,686	-		DZA65_RS18190	0.67	-0.3
3,922,686	-		DZA65_RS18190	0.67	-0.1
3,922,686	-		DZA65_RS18190	0.67	+0.3
3,922,694	+		DZA65_RS18190	0.68	-0.1
3,922,695	-		DZA65_RS18190	0.68	-1.3
3,922,695	-		DZA65_RS18190	0.68	-1.3
3,922,807	+		DZA65_RS18190	0.75	-0.6
3,922,807	+		DZA65_RS18190	0.75	-1.7
3,922,808	-		DZA65_RS18190	0.75	+0.1
3,922,808	-		DZA65_RS18190	0.75	+0.3
3,922,865	+		DZA65_RS18190	0.78	+0.6
3,922,866	-		DZA65_RS18190	0.79	-1.9
3,923,107	+				+1.7
3,923,108	-				-0.9
3,923,205	-				+0.2
3,923,206	+				-0.0
3,923,206	+				+0.1
3,923,206	+				+0.3
3,923,207	-				-1.1
3,923,207	-				-0.5
3,923,207	-				-0.7
3,923,207	-				+0.6
3,923,207	-				-0.2
3,923,250	-				-1.1
3,923,274	-				+0.8
3,923,316	+				+0.1
3,923,316	+				-0.3
3,923,317	-				+0.1
3,923,317	-				-0.2
3,923,318	+				-0.9
3,923,318	+				-1.2
3,923,319	-				-0.3
3,923,393	+				-0.2
3,923,394	-				+0.3
3,923,567	+				-0.7
3,923,567	+				+0.5
3,923,568	-				+0.5
3,923,568	-				-0.3
3,923,704	+				+0.7
3,923,704	+				+1.2
3,923,705	-				-0.7
3,923,736	-				+0.7
3,923,747	-				-0.3
3,923,747	-				-0.6
3,923,747	-				+0.0
3,923,747	-				+0.2
3,923,747	-				+1.0
3,923,748	+				-1.3
3,923,748	+				-0.8
3,923,748	+				+0.7
3,923,748	+				-1.9
3,923,749	-				+0.4
3,923,749	-				+0.5
3,923,749	-				+3.0
3,923,749	-				+0.4
3,923,751	+				+0.1
3,923,751	+				+0.7
3,923,757	+				+0.8
3,923,795	+				+0.7
3,923,795	+				+0.7
3,923,795	+				-0.6
3,923,795	+				+0.2
3,923,795	+				-1.6
3,923,796	-				-0.3
3,923,796	-				-1.0
3,923,798	+				-0.2
3,923,799	-				+0.3
3,923,799	-				-1.5
3,923,799	-				-0.3
3,923,799	-				-0.5
3,923,812	-				+1.1
3,923,836	+				+0.0
3,923,868	-				+0.3
3,923,868	-				-0.3
3,923,872	-				+0.7
3,923,939	+		DZA65_RS18195	0.10	+0.7
3,923,940	-		DZA65_RS18195	0.11	+0.1
3,923,940	-		DZA65_RS18195	0.11	+0.7
3,923,940	-		DZA65_RS18195	0.11	-0.5
3,923,958	-		DZA65_RS18195	0.12	-0.6
3,923,981	+		DZA65_RS18195	0.13	+0.9
3,923,988	+		DZA65_RS18195	0.14	-0.8
3,924,093	-		DZA65_RS18195	0.21	-0.2
3,924,093	-		DZA65_RS18195	0.21	+0.1
3,924,110	+		DZA65_RS18195	0.22	+0.6
3,924,110	+		DZA65_RS18195	0.22	-0.7
3,924,110	+		DZA65_RS18195	0.22	+0.7
3,924,111	-		DZA65_RS18195	0.22	-0.3
3,924,125	+		DZA65_RS18195	0.23	-0.8
3,924,165	+		DZA65_RS18195	0.25	-0.8
3,924,165	+		DZA65_RS18195	0.25	-2.0
3,924,165	+				-1.3
3,924,165	+		DZA65_RS18195	0.25	+0.2
3,924,165	+		DZA65_RS18195	0.25	-1.3
3,924,165	+				-0.3
3,924,165	+		DZA65_RS18195	0.25	-2.3
3,924,166	-		DZA65_RS18195	0.25	+0.2
3,924,166	-		DZA65_RS18195	0.25	+0.7
3,924,175	+		DZA65_RS18195	0.26	+0.9
3,924,182	+		DZA65_RS18195	0.26	+0.4
3,924,182	+		DZA65_RS18195	0.26	+1.5