Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14695

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,193,900	+		DZA65_RS14690	0.44	-0.3
3,193,900	+		DZA65_RS14690	0.44	-0.3
3,193,900	+				+0.4
3,193,900	+		DZA65_RS14690	0.44	-0.4
3,193,900	+		DZA65_RS14690	0.44	+0.7
3,193,901	-		DZA65_RS14690	0.45	-0.2
3,193,901	-		DZA65_RS14690	0.45	+0.4
3,193,901	-		DZA65_RS14690	0.45	-0.8
3,193,901	-		DZA65_RS14690	0.45	-0.5
3,193,901	-		DZA65_RS14690	0.45	+0.2
3,193,903	+		DZA65_RS14690	0.45	-0.4
3,193,903	+		DZA65_RS14690	0.45	-0.7
3,193,903	+		DZA65_RS14690	0.45	-1.4
3,193,903	+		DZA65_RS14690	0.45	-1.8
3,193,903	+		DZA65_RS14690	0.45	+0.9
3,193,904	-		DZA65_RS14690	0.45	-0.2
3,193,907	+		DZA65_RS14690	0.46	+0.2
3,193,907	+		DZA65_RS14690	0.46	+1.5
3,193,908	-		DZA65_RS14690	0.46	-2.2
3,193,992	+		DZA65_RS14690	0.61	-0.0
3,193,993	-		DZA65_RS14690	0.61	+0.4
3,193,993	-		DZA65_RS14690	0.61	-0.1
3,193,993	-		DZA65_RS14690	0.61	+0.4
3,193,993	-		DZA65_RS14690	0.61	+0.0
3,194,037	-		DZA65_RS14690	0.69	+1.4
3,194,237	+				-0.7
3,194,238	-				-1.6
3,194,269	+				+2.7
3,194,269	+				-2.8
3,194,269	+				+0.4
3,194,269	+				-0.4
3,194,269	+				-0.0
3,194,270	-				+1.4
3,194,270	-				-0.5
3,194,272	+				+1.6
3,194,272	+				+1.4
3,194,272	+				-1.0
3,194,273	-				-0.8
3,194,273	-				+0.2
3,194,298	+				-0.2
3,194,298	+				-0.6
3,194,299	-				-0.6
3,194,299	-				-1.0
3,194,299	-				+0.0
3,194,306	+				+0.8
3,194,306	+				-0.2
3,194,307	-				-0.2
3,194,321	+				-1.2
3,194,321	+				-1.5
3,194,358	+				-0.3
3,194,358	+				-0.2
3,194,359	-				-0.6
3,194,370	+				-0.8
3,194,458	+				+0.2
3,194,530	-				-1.0
3,194,538	+				+0.2
3,194,539	-				-0.4
3,194,540	+				+0.6
3,194,540	+				+0.2
3,194,540	+				-1.0
3,194,540	+				+0.4
3,194,540	+				+0.1
3,194,540	+				-0.6
3,194,540	+				-1.2
3,194,540	+				+0.5
3,194,540	+				+0.7
3,194,540	+				+0.4
3,194,540	+				-1.0
3,194,541	-				+0.7
3,194,541	-				-0.6
3,194,541	-				-0.3
3,194,541	-				-2.5
3,194,541	-				-0.2
3,194,541	-				+0.0
3,194,541	-				-0.6
3,194,541	-				+1.2
3,194,541	-				-0.3
3,194,541	-				-0.5
3,194,541	-				+0.7
3,194,542	+				+1.4
3,194,542	+				+0.0
3,194,542	+				+1.0
3,194,542	+				-0.7
3,194,542	+				+0.6
3,194,542	+				-0.3
3,194,542	+				+0.8
3,194,543	-				-0.6
3,194,543	-				-0.0
3,194,543	-				+1.2
3,194,543	-				+1.2
3,194,543	-				-2.4
3,194,543	-				+0.7
3,194,543	-				-1.5
3,194,543	-				-1.6
3,194,543	-				-1.6
3,194,544	+				-0.3
3,194,544	+				+0.4
3,194,544	+				-0.6
3,194,545	-				-0.5
3,194,545	-				+1.0
3,194,545	-				+0.5
3,194,546	+				-0.2
3,194,546	+				-0.4
3,194,546	+				+0.2
3,194,546	+				+0.4
3,194,547	-				-1.6
3,194,547	-				-0.0
3,194,547	-				+1.0
3,194,547	-				+0.9
3,194,547	-				-0.8
3,194,552	+				+1.0
3,194,552	+				-0.4
3,194,552	+				-0.1
3,194,577	+				-0.5
3,194,577	+				+0.4
3,194,605	+				+0.3
3,194,606	-				-0.6
3,194,606	-				-0.6
3,194,606	-				-1.0
3,194,606	-				+0.4
3,194,614	-				+0.1
3,194,627	+				-0.6
3,194,628	-				+0.2
3,194,628	-				-0.6
3,194,630	-				+1.2
3,194,641	+				-1.7
3,194,641	+				+0.1
3,194,641	+				+0.0
3,194,641	+				+1.4
3,194,642	-				-2.2
3,194,642	-				+0.4
3,194,642	-				+0.1
3,194,642	-				+0.8
3,194,661	+				+1.4
3,194,662	-				+0.0
3,194,662	-				-0.2
3,194,664	+				-0.4
3,194,664	+				-0.0
3,194,667	+				-0.3
3,194,668	-				-1.4
3,194,668	-				-0.3
3,194,704	+				+0.0
3,194,784	-				+1.1
3,194,803	-				-0.8
3,194,815	-				+0.9
3,194,847	+				-0.7
3,194,914	+				+0.4
3,194,914	+				-0.6
3,194,915	-				-0.9
3,194,915	-				-1.0
3,194,915	-				+1.0
3,194,931	-				+0.4
3,194,965	+				-0.2
3,194,965	+				+0.1
3,194,973	+				+0.4
3,194,973	+				-0.6
3,194,974	-				+1.7
3,194,977	-				-0.1
3,195,016	-		DZA65_RS14695	0.11	-1.2
3,195,021	+		DZA65_RS14695	0.12	+0.4
3,195,046	+		DZA65_RS14695	0.14	-0.2
3,195,047	-		DZA65_RS14695	0.14	-0.1
3,195,047	-		DZA65_RS14695	0.14	+0.4
3,195,097	-		DZA65_RS14695	0.18	-0.3
3,195,108	+		DZA65_RS14695	0.18	+0.1
3,195,202	-		DZA65_RS14695	0.26	-1.2
3,195,270	+		DZA65_RS14695	0.31	+1.4
3,195,270	+		DZA65_RS14695	0.31	+0.9
3,195,270	+		DZA65_RS14695	0.31	+0.4
3,195,271	-		DZA65_RS14695	0.31	+0.8
3,195,281	-		DZA65_RS14695	0.32	+0.0
3,195,308	+		DZA65_RS14695	0.34	-1.2
3,195,309	-		DZA65_RS14695	0.34	-1.2
3,195,309	-		DZA65_RS14695	0.34	+0.3
3,195,336	-		DZA65_RS14695	0.36	-0.5
3,195,336	-		DZA65_RS14695	0.36	-0.4
3,195,352	+		DZA65_RS14695	0.38	-1.8
3,195,368	-				-0.6
3,195,396	+		DZA65_RS14695	0.41	+0.6
3,195,396	+		DZA65_RS14695	0.41	+1.1
3,195,397	-		DZA65_RS14695	0.41	+1.0
3,195,400	-		DZA65_RS14695	0.41	+0.5
3,195,400	-		DZA65_RS14695	0.41	-0.4
3,195,730	+		DZA65_RS14695	0.67	-0.3
3,195,730	+		DZA65_RS14695	0.67	+1.4
3,195,775	-		DZA65_RS14695	0.71	-1.6
3,195,775	-		DZA65_RS14695	0.71	-0.9
3,195,777	+		DZA65_RS14695	0.71	-0.9
3,195,777	+		DZA65_RS14695	0.71	+0.6
3,195,777	+		DZA65_RS14695	0.71	-0.5
3,195,777	+		DZA65_RS14695	0.71	-1.4
3,195,777	+		DZA65_RS14695	0.71	-1.6
3,195,777	+		DZA65_RS14695	0.71	+0.2
3,195,778	-		DZA65_RS14695	0.71	+0.4
3,195,778	-		DZA65_RS14695	0.71	-0.0
3,195,778	-		DZA65_RS14695	0.71	+0.2
3,195,778	-		DZA65_RS14695	0.71	-0.6
3,195,778	-		DZA65_RS14695	0.71	-1.9
3,195,790	+		DZA65_RS14695	0.72	+0.0
3,195,790	+		DZA65_RS14695	0.72	-0.6
3,195,790	+		DZA65_RS14695	0.72	-0.3
3,195,790	+		DZA65_RS14695	0.72	-0.2
3,195,791	-		DZA65_RS14695	0.72	+1.0
3,195,791	-		DZA65_RS14695	0.72	-0.2
3,195,791	-		DZA65_RS14695	0.72	+1.4
3,195,975	+		DZA65_RS14695	0.86	-0.1
3,195,975	+		DZA65_RS14695	0.86	+1.5
3,195,975	+		DZA65_RS14695	0.86	+0.2
3,195,976	-		DZA65_RS14695	0.86	-0.5
3,195,976	-		DZA65_RS14695	0.86	-0.2
3,195,976	-		DZA65_RS14695	0.86	-0.5
3,195,976	-		DZA65_RS14695	0.86	-0.4
3,195,976	-		DZA65_RS14695	0.86	+1.4
3,196,133	+				+0.0
3,196,133	+				-0.4
3,196,134	-				-0.6
3,196,134	-				-0.4
3,196,134	-				-1.6
3,196,134	-				-1.9
3,196,290	+				+0.4
3,196,290	+				+0.0
3,196,291	-				-1.2
3,196,292	+				-0.2
3,196,292	+				-1.4
3,196,292	+				-0.2
3,196,326	+				+1.2
3,196,335	+				+0.4
3,196,336	-				-0.9
3,196,336	-				-0.6
3,196,354	+				-0.0
3,196,354	+				+0.4
3,196,355	-				+0.2
3,196,355	-				+1.4
3,196,355	-				-1.7
3,196,456	+				-0.8
3,196,456	+				-0.8
3,196,525	+				-1.2
3,196,526	-				+0.2
3,196,582	+		DZA65_RS14700	0.13	+0.7
3,196,633	+		DZA65_RS14700	0.16	+0.1
3,196,633	+		DZA65_RS14700	0.16	-2.2
3,196,633	+		DZA65_RS14700	0.16	+1.1
3,196,633	+		DZA65_RS14700	0.16	-0.7
3,196,633	+		DZA65_RS14700	0.16	+0.1
3,196,634	-		DZA65_RS14700	0.16	+2.0
3,196,634	-		DZA65_RS14700	0.16	-1.6
3,196,634	-		DZA65_RS14700	0.16	-0.9
3,196,681	+		DZA65_RS14700	0.18	+1.3
3,196,681	+		DZA65_RS14700	0.18	-2.2
3,196,681	+		DZA65_RS14700	0.18	-1.9
3,196,681	+		DZA65_RS14700	0.18	-1.6
3,196,681	+		DZA65_RS14700	0.18	-0.6
3,196,681	+		DZA65_RS14700	0.18	+0.4
3,196,681	+		DZA65_RS14700	0.18	+0.4
3,196,681	+		DZA65_RS14700	0.18	+0.4
3,196,682	-		DZA65_RS14700	0.19	-1.9
3,196,682	-		DZA65_RS14700	0.19	-0.1
3,196,682	-		DZA65_RS14700	0.19	-1.2
3,196,682	-		DZA65_RS14700	0.19	-0.4
3,196,682	-		DZA65_RS14700	0.19	+0.0
3,196,682	-		DZA65_RS14700	0.19	-0.4
3,196,685	+		DZA65_RS14700	0.19	-0.8
3,196,685	+		DZA65_RS14700	0.19	-0.4
3,196,685	+		DZA65_RS14700	0.19	+0.4
3,196,685	+		DZA65_RS14700	0.19	+0.9
3,196,685	+		DZA65_RS14700	0.19	-1.9
3,196,685	+		DZA65_RS14700	0.19	+1.2
3,196,686	-		DZA65_RS14700	0.19	+0.4
3,196,686	-		DZA65_RS14700	0.19	+0.8
3,196,686	-		DZA65_RS14700	0.19	-2.6
3,196,686	-		DZA65_RS14700	0.19	+1.5
3,196,686	-		DZA65_RS14700	0.19	+0.3
3,196,703	-		DZA65_RS14700	0.20	-2.2
3,196,708	+		DZA65_RS14700	0.20	+0.7
3,196,708	+		DZA65_RS14700	0.20	-0.0
3,196,709	-		DZA65_RS14700	0.20	+0.0
3,196,727	+		DZA65_RS14700	0.21	-0.3
3,196,727	+		DZA65_RS14700	0.21	-0.4
3,196,727	+		DZA65_RS14700	0.21	+1.6
3,196,728	-		DZA65_RS14700	0.21	-0.2
3,196,728	-		DZA65_RS14700	0.21	-0.5
3,196,728	-		DZA65_RS14700	0.21	+0.8
3,196,728	-		DZA65_RS14700	0.21	-0.9
3,196,734	-		DZA65_RS14700	0.21	-0.1
3,196,734	-		DZA65_RS14700	0.21	-0.2
3,196,734	-		DZA65_RS14700	0.21	-0.4
3,196,734	-		DZA65_RS14700	0.21	-0.2
3,196,852	+		DZA65_RS14700	0.28	+1.3
3,196,853	-		DZA65_RS14700	0.28	+0.4
3,196,928	-		DZA65_RS14700	0.32	+0.1
3,197,001	+		DZA65_RS14700	0.37	+0.4
3,197,002	-		DZA65_RS14700	0.37	+0.1
3,197,002	-		DZA65_RS14700	0.37	-0.6
3,197,002	-		DZA65_RS14700	0.37	+0.2
3,197,036	+		DZA65_RS14700	0.39	+0.4
3,197,036	+		DZA65_RS14700	0.39	+0.4
3,197,037	-		DZA65_RS14700	0.39	+0.4
3,197,037	-		DZA65_RS14700	0.39	-1.2
3,197,117	+		DZA65_RS14700	0.43	-0.3