Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13835

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,968,207	+				-1.0
2,968,302	+				-0.5
2,968,303	-				-1.5
2,968,339	+				+0.1
2,968,343	+				-0.3
2,968,343	+				+0.9
2,968,344	-				+0.8
2,968,344	-				+0.1
2,968,362	+				-0.1
2,968,363	-				+0.2
2,968,384	+				+0.6
2,968,384	+				-0.2
2,968,385	-				+0.9
2,968,385	-				-0.7
2,968,385	-				-0.7
2,968,385	-				-0.2
2,968,385	-				+0.5
2,968,385	-				-0.3
2,968,415	+				-0.6
2,968,416	-				+0.3
2,968,416	-				-0.3
2,968,427	+				-0.4
2,968,428	-				-0.3
2,968,428	-				+0.3
2,968,489	+				+0.3
2,968,490	-				+0.6
2,968,503	+				-1.3
2,968,503	+				-1.0
2,968,503	+				+0.3
2,968,503	+				-0.3
2,968,503	+				+0.5
2,968,506	-				-0.4
2,968,506	-				-0.1
2,968,528	-				-0.4
2,968,548	+				-1.8
2,968,548	+				+1.3
2,968,548	+				-0.1
2,968,549	-				+1.3
2,968,554	+				+1.8
2,968,554	+				+0.8
2,968,555	-				-0.1
2,968,602	+				+1.3
2,968,602	+				+0.8
2,968,602	+				-0.1
2,968,602	+				-0.4
2,968,603	-				-0.2
2,968,603	-				-0.1
2,968,624	-				+0.3
2,968,633	-				+0.9
2,968,633	-				-1.8
2,968,633	-				+0.0
2,968,633	-				-0.6
2,968,653	+		DZA65_RS13830	0.11	-0.3
2,968,657	+		DZA65_RS13830	0.12	+0.0
2,968,657	+		DZA65_RS13830	0.12	-0.7
2,968,657	+		DZA65_RS13830	0.12	+0.1
2,968,657	+		DZA65_RS13830	0.12	-2.7
2,968,657	+		DZA65_RS13830	0.12	-0.6
2,968,657	+		DZA65_RS13830	0.12	+0.3
2,968,658	-		DZA65_RS13830	0.12	+1.5
2,968,658	-		DZA65_RS13830	0.12	-1.1
2,968,658	-		DZA65_RS13830	0.12	+1.0
2,968,658	-		DZA65_RS13830	0.12	-0.4
2,968,658	-		DZA65_RS13830	0.12	+0.4
2,968,658	-		DZA65_RS13830	0.12	+0.6
2,968,658	-		DZA65_RS13830	0.12	+0.8
2,968,658	-		DZA65_RS13830	0.12	-0.8
2,968,658	-		DZA65_RS13830	0.12	+0.5
2,968,783	-		DZA65_RS13830	0.36	+0.3
2,968,783	-		DZA65_RS13830	0.36	+2.6
2,968,783	-		DZA65_RS13830	0.36	-0.3
2,968,783	-		DZA65_RS13830	0.36	+0.5
2,968,783	-		DZA65_RS13830	0.36	-1.4
2,968,783	-		DZA65_RS13830	0.36	+0.4
2,968,783	-		DZA65_RS13830	0.36	-1.4
2,968,858	+		DZA65_RS13830	0.51	+0.5
2,968,868	-		DZA65_RS13830	0.53	+0.3
2,968,868	-		DZA65_RS13830	0.53	-1.0
2,968,899	-		DZA65_RS13830	0.59	-0.8
2,968,933	+		DZA65_RS13830	0.65	+0.3
2,968,933	+		DZA65_RS13830	0.65	-1.0
2,968,934	-		DZA65_RS13830	0.65	+0.9
2,968,934	-		DZA65_RS13830	0.65	-0.1
2,968,976	-		DZA65_RS13830	0.74	-0.7
2,968,976	-		DZA65_RS13830	0.74	-1.3
2,968,976	-		DZA65_RS13830	0.74	+1.1
2,968,976	-		DZA65_RS13830	0.74	-0.1
2,968,976	-		DZA65_RS13830	0.74	-0.4
2,969,125	+				-0.7
2,969,126	-				+0.3
2,969,126	-				+0.0
2,969,128	+				-0.1
2,969,128	+				-0.6
2,969,129	-				-0.6
2,969,129	-				-0.1
2,969,129	-				-1.0
2,969,129	-				-1.6
2,969,129	-				-0.2
2,969,138	-				-1.4
2,969,143	+				+0.5
2,969,143	+				+1.6
2,969,143	+				-1.3
2,969,143	+				-1.7
2,969,143	+				-0.3
2,969,143	+				-0.2
2,969,143	+				-1.1
2,969,143	+				+1.1
2,969,143	+				+0.3
2,969,143	+				+1.5
2,969,144	-				+0.3
2,969,144	-				+0.1
2,969,144	-				+0.9
2,969,144	-				+0.1
2,969,144	-				+0.5
2,969,144	-				-1.3
2,969,144	-				+1.3
2,969,144	-				-2.0
2,969,144	-				+1.0
2,969,144	-				-0.3
2,969,144	-				-1.3
2,969,144	-				-0.2
2,969,144	-				+0.3
2,969,144	-				+2.3
2,969,144	-				-2.0
2,969,147	+				-0.9
2,969,147	+				-0.3
2,969,147	+				+0.0
2,969,147	+				-1.7
2,969,147	+				-1.3
2,969,148	-				-0.7
2,969,148	-				+2.1
2,969,148	-				-0.4
2,969,148	-				+0.3
2,969,148	-				-1.5
2,969,148	-				-2.0
2,969,201	+				-2.0
2,969,267	+		DZA65_RS13835	0.14	-0.1
2,969,268	-		DZA65_RS13835	0.14	+1.1
2,969,286	+		DZA65_RS13835	0.17	+2.1
2,969,286	+		DZA65_RS13835	0.17	+0.5
2,969,290	-		DZA65_RS13835	0.17	+1.3
2,969,321	+		DZA65_RS13835	0.22	+1.2
2,969,321	+		DZA65_RS13835	0.22	+0.9
2,969,322	-		DZA65_RS13835	0.22	+0.8
2,969,378	+		DZA65_RS13835	0.29	-0.7
2,969,451	+		DZA65_RS13835	0.40	-1.0
2,969,467	+		DZA65_RS13835	0.42	+1.3
2,969,467	+		DZA65_RS13835	0.42	-1.0
2,969,468	-		DZA65_RS13835	0.42	+1.9
2,969,468	-		DZA65_RS13835	0.42	+0.9
2,969,468	-		DZA65_RS13835	0.42	+1.3
2,969,512	+		DZA65_RS13835	0.48	-0.3
2,969,513	-		DZA65_RS13835	0.48	-0.7
2,969,513	-		DZA65_RS13835	0.48	+1.1
2,969,513	-		DZA65_RS13835	0.48	-1.8
2,969,665	+		DZA65_RS13835	0.69	+0.6
2,969,665	+		DZA65_RS13835	0.69	+0.6
2,969,665	+		DZA65_RS13835	0.69	+1.1
2,969,666	-		DZA65_RS13835	0.69	+0.6
2,969,666	-		DZA65_RS13835	0.69	+0.3
2,969,666	-		DZA65_RS13835	0.69	-1.6
2,969,666	-		DZA65_RS13835	0.69	+0.5
2,969,666	-		DZA65_RS13835	0.69	-0.5
2,969,679	+		DZA65_RS13835	0.71	-0.0
2,969,679	+		DZA65_RS13835	0.71	+2.1
2,969,679	+		DZA65_RS13835	0.71	+1.9
2,969,679	+		DZA65_RS13835	0.71	-3.4
2,969,680	-		DZA65_RS13835	0.71	-1.4
2,969,680	-		DZA65_RS13835	0.71	+0.6
2,969,680	-		DZA65_RS13835	0.71	+0.7
2,969,680	-		DZA65_RS13835	0.71	-0.7
2,969,680	-		DZA65_RS13835	0.71	+0.0
2,969,712	+		DZA65_RS13835	0.76	+0.3
2,969,713	-		DZA65_RS13835	0.76	+0.4
2,969,796	-		DZA65_RS13835	0.87	+1.3
2,969,801	+		DZA65_RS13835	0.88	-0.3
2,969,802	-		DZA65_RS13835	0.88	-0.4
2,969,802	-		DZA65_RS13835	0.88	-0.2
2,969,802	-				-0.9
2,969,830	-				-0.5
2,969,830	-				-0.2
2,969,874	+				+1.1
2,969,874	+				+0.5
2,969,874	+				+0.4
2,969,875	-				-0.7
2,969,875	-				+0.2
2,969,875	-				-0.3
2,969,893	+				+1.5
2,969,893	+				-0.3
2,969,894	-				+0.1
2,969,894	-				+0.7
2,969,897	+				+2.6
2,969,897	+				-0.7
2,969,897	+				+0.3
2,969,897	+				+1.9
2,969,897	+				+0.7
2,969,897	+				-0.5
2,969,897	+				+0.7
2,969,897	+				+0.6
2,969,897	+				-0.2
2,969,898	-				+0.3
2,969,898	-				+0.7
2,969,902	-				-1.0
2,969,904	-				+0.4
2,969,909	+				-0.3
2,969,921	+				+1.0
2,969,927	+				-0.1
2,969,928	-				+0.3
2,969,935	+				+1.3
2,969,935	+				-2.0
2,969,936	-				-0.3
2,969,940	+				-0.5
2,969,940	+				-0.7
2,969,940	+				+0.2
2,969,940	+				+0.1
2,969,941	-				-0.4
2,969,941	-				+0.1
2,969,943	+				+0.3
2,969,943	+				+0.3
2,969,944	-				-0.7
2,969,944	-				+0.7
2,969,944	-				-1.8
2,969,960	+				+0.8
2,969,960	+				+0.1
2,969,961	-				-0.5
2,969,989	-				-0.7
2,970,015	-				-1.1
2,970,028	+				-0.3
2,970,033	+				-0.2
2,970,033	+				+0.6
2,970,034	-				-0.1
2,970,042	+				+0.6
2,970,059	+				-1.0
2,970,059	+				+0.3
2,970,059	+				-0.8
2,970,060	-				+0.1
2,970,078	+				-2.0
2,970,078	+				+0.3
2,970,078	+				+0.8
2,970,078	+				+0.1
2,970,079	-				+0.1
2,970,079	-				-0.7
2,970,079	-				+0.1
2,970,079	-				+1.8
2,970,079	-				-0.4
2,970,094	+				+0.3
2,970,107	+				-0.3
2,970,107	+				-0.1
2,970,108	-				+0.6
2,970,118	+				-1.7
2,970,122	-				-1.3
2,970,165	-				+0.3
2,970,165	-				+1.2
2,970,173	-				-1.1
2,970,173	-				+0.3
2,970,207	+				+0.3
2,970,208	-				+1.3
2,970,208	-				+0.0
2,970,221	-				-0.0
2,970,259	+				+0.2
2,970,281	+				-0.8
2,970,282	-				+1.0
2,970,285	+				-0.2
2,970,286	-				-2.2
2,970,326	+				+0.1
2,970,327	-				+0.0
2,970,433	-		DZA65_RS13840	0.11	-0.7
2,970,501	+		DZA65_RS13840	0.15	-2.0
2,970,526	-		DZA65_RS13840	0.17	+0.9
2,970,578	+		DZA65_RS13840	0.21	+0.6
2,970,579	-		DZA65_RS13840	0.21	+0.2
2,970,636	+		DZA65_RS13840	0.25	+0.7
2,970,708	+		DZA65_RS13840	0.30	-1.0
2,970,709	-		DZA65_RS13840	0.30	+0.9
2,970,730	-		DZA65_RS13840	0.32	+0.3
2,970,740	+		DZA65_RS13840	0.32	-0.4
2,970,741	-		DZA65_RS13840	0.32	-0.4
2,970,741	-		DZA65_RS13840	0.32	-2.5
2,970,780	+		DZA65_RS13840	0.35	+0.3
2,970,780	+		DZA65_RS13840	0.35	+0.1
2,970,790	+		DZA65_RS13840	0.36	+0.9
2,970,822	+		DZA65_RS13840	0.38	-1.7
2,970,886	-		DZA65_RS13840	0.42	+0.9