Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10020

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,121,388	+		DZA65_RS10015	0.57	+0.3
2,121,389	-		DZA65_RS10015	0.57	-0.7
2,121,435	+		DZA65_RS10015	0.60	+1.1
2,121,435	+		DZA65_RS10015	0.60	+0.3
2,121,454	+		DZA65_RS10015	0.61	-0.5
2,121,455	-		DZA65_RS10015	0.61	+0.4
2,121,457	+		DZA65_RS10015	0.61	+1.4
2,121,457	+		DZA65_RS10015	0.61	+0.0
2,121,462	-		DZA65_RS10015	0.61	-0.1
2,121,529	+		DZA65_RS10015	0.64	-1.7
2,121,530	-		DZA65_RS10015	0.64	-1.3
2,121,530	-		DZA65_RS10015	0.64	+2.2
2,121,557	+		DZA65_RS10015	0.66	-0.3
2,121,557	+		DZA65_RS10015	0.66	+0.3
2,121,557	+		DZA65_RS10015	0.66	+0.3
2,121,559	+		DZA65_RS10015	0.66	+2.3
2,121,559	+		DZA65_RS10015	0.66	-0.2
2,121,559	+		DZA65_RS10015	0.66	+0.1
2,121,560	-		DZA65_RS10015	0.66	-1.3
2,121,560	-		DZA65_RS10015	0.66	-2.7
2,121,560	-		DZA65_RS10015	0.66	+0.0
2,121,560	-		DZA65_RS10015	0.66	+1.1
2,121,560	-		DZA65_RS10015	0.66	-0.5
2,121,608	-		DZA65_RS10015	0.68	-0.0
2,121,650	+		DZA65_RS10015	0.71	-0.0
2,121,650	+		DZA65_RS10015	0.71	+0.1
2,121,650	+		DZA65_RS10015	0.71	+0.6
2,121,650	+		DZA65_RS10015	0.71	+1.3
2,121,650	+		DZA65_RS10015	0.71	+1.4
2,121,651	-		DZA65_RS10015	0.71	-2.0
2,121,651	-		DZA65_RS10015	0.71	+0.3
2,121,713	-		DZA65_RS10015	0.74	+2.6
2,121,774	+		DZA65_RS10015	0.77	+2.2
2,121,774	+		DZA65_RS10015	0.77	+0.0
2,121,774	+		DZA65_RS10015	0.77	-0.3
2,121,774	+		DZA65_RS10015	0.77	-0.7
2,121,774	+		DZA65_RS10015	0.77	-1.3
2,121,774	+		DZA65_RS10015	0.77	-1.3
2,121,775	-		DZA65_RS10015	0.77	+0.4
2,121,775	-		DZA65_RS10015	0.77	+0.9
2,121,775	-		DZA65_RS10015	0.77	+0.7
2,121,787	+		DZA65_RS10015	0.78	-0.5
2,121,788	-		DZA65_RS10015	0.78	+0.0
2,121,837	+		DZA65_RS10015	0.80	-0.4
2,121,856	+		DZA65_RS10015	0.81	+1.0
2,121,857	-		DZA65_RS10015	0.81	-0.2
2,121,857	-		DZA65_RS10015	0.81	+1.3
2,121,857	-		DZA65_RS10015	0.81	+2.2
2,122,016	+		DZA65_RS10015	0.89	-1.3
2,122,016	+		DZA65_RS10015	0.89	-0.1
2,122,017	-		DZA65_RS10015	0.90	+0.1
2,122,017	-		DZA65_RS10015	0.90	+1.0
2,122,017	-		DZA65_RS10015	0.90	-0.4
2,122,115	+				-1.7
2,122,115	+				-0.7
2,122,199	+				-0.8
2,122,200	-				+1.5
2,122,217	+				+0.3
2,122,217	+				+0.1
2,122,218	-				-1.0
2,122,245	+				+2.6
2,122,246	-				-0.7
2,122,268	+				+0.5
2,122,272	+				+0.1
2,122,273	-				-0.4
2,122,276	+				+0.1
2,122,276	+				-1.1
2,122,276	+				-0.4
2,122,276	+				+0.9
2,122,276	+				+0.3
2,122,277	-				+0.0
2,122,277	-				-0.3
2,122,277	-				+0.2
2,122,277	-				-1.7
2,122,303	-				-0.7
2,122,303	-				-2.5
2,122,306	+				+0.5
2,122,307	-				+2.3
2,122,339	+				-2.3
2,122,355	+				-1.0
2,122,374	-				-0.3
2,122,446	+		DZA65_RS10020	0.15	-0.4
2,122,446	+		DZA65_RS10020	0.15	+0.0
2,122,447	-		DZA65_RS10020	0.15	-0.7
2,122,447	-		DZA65_RS10020	0.15	+0.5
2,122,447	-		DZA65_RS10020	0.15	-0.7
2,122,448	+		DZA65_RS10020	0.16	+1.3
2,122,448	+		DZA65_RS10020	0.16	+0.0
2,122,448	+		DZA65_RS10020	0.16	+0.1
2,122,449	-		DZA65_RS10020	0.16	+0.9
2,122,533	+		DZA65_RS10020	0.30	-3.2
2,122,533	+		DZA65_RS10020	0.30	+1.5
2,122,533	+		DZA65_RS10020	0.30	-0.4
2,122,533	+		DZA65_RS10020	0.30	+0.9
2,122,534	-		DZA65_RS10020	0.30	-0.2
2,122,550	+		DZA65_RS10020	0.33	+1.9
2,122,550	+		DZA65_RS10020	0.33	-0.7
2,122,568	-		DZA65_RS10020	0.35	+0.4
2,122,614	-		DZA65_RS10020	0.43	+1.1
2,122,629	+		DZA65_RS10020	0.46	-0.3
2,122,629	+		DZA65_RS10020	0.46	+0.9
2,122,629	+		DZA65_RS10020	0.46	+0.6
2,122,629	+		DZA65_RS10020	0.46	-0.5
2,122,630	-		DZA65_RS10020	0.46	+0.6
2,122,630	-		DZA65_RS10020	0.46	-1.7
2,122,630	-		DZA65_RS10020	0.46	+0.3
2,122,630	-		DZA65_RS10020	0.46	-1.1
2,122,632	-		DZA65_RS10020	0.46	-0.2
2,122,632	-		DZA65_RS10020	0.46	-0.2
2,122,641	+		DZA65_RS10020	0.48	-0.9
2,122,641	+		DZA65_RS10020	0.48	+1.4
2,122,642	-		DZA65_RS10020	0.48	-2.5
2,122,642	-		DZA65_RS10020	0.48	-0.7
2,122,642	-		DZA65_RS10020	0.48	+0.6
2,122,642	-		DZA65_RS10020	0.48	+1.1
2,122,642	-		DZA65_RS10020	0.48	-0.1
2,122,675	+		DZA65_RS10020	0.53	-0.1
2,122,676	-		DZA65_RS10020	0.53	+1.9
2,122,683	+		DZA65_RS10020	0.55	+0.7
2,122,683	+		DZA65_RS10020	0.55	-0.1
2,122,683	+		DZA65_RS10020	0.55	-0.1
2,122,683	+		DZA65_RS10020	0.55	+0.4
2,122,683	+		DZA65_RS10020	0.55	+0.9
2,122,684	-		DZA65_RS10020	0.55	-1.0
2,122,684	-		DZA65_RS10020	0.55	-0.5
2,122,684	-		DZA65_RS10020	0.55	-0.1
2,122,686	-		DZA65_RS10020	0.55	-1.3
2,122,686	-		DZA65_RS10020	0.55	+0.3
2,122,686	-		DZA65_RS10020	0.55	+1.5
2,122,686	-		DZA65_RS10020	0.55	+0.6
2,122,686	-		DZA65_RS10020	0.55	+0.1
2,122,686	-		DZA65_RS10020	0.55	-2.2
2,122,689	+		DZA65_RS10020	0.56	-0.2
2,122,689	+		DZA65_RS10020	0.56	+1.5
2,122,690	-		DZA65_RS10020	0.56	+0.7
2,122,710	-				-2.7
2,122,726	-		DZA65_RS10020	0.62	+0.3
2,122,726	-		DZA65_RS10020	0.62	+0.8
2,122,739	+		DZA65_RS10020	0.64	+0.6
2,122,739	+		DZA65_RS10020	0.64	+1.2
2,122,739	+		DZA65_RS10020	0.64	+0.3
2,122,739	+		DZA65_RS10020	0.64	+0.5
2,122,740	-				-0.3
2,122,740	-		DZA65_RS10020	0.64	-0.2
2,122,785	+		DZA65_RS10020	0.71	-0.0
2,122,794	+		DZA65_RS10020	0.73	-0.1
2,122,794	+		DZA65_RS10020	0.73	-0.1
2,122,795	-		DZA65_RS10020	0.73	+0.3
2,122,795	-		DZA65_RS10020	0.73	-0.9
2,122,795	-		DZA65_RS10020	0.73	+0.2
2,122,825	+		DZA65_RS10020	0.78	+0.2
2,122,825	+		DZA65_RS10020	0.78	+0.5
2,122,825	+		DZA65_RS10020	0.78	-0.5
2,122,825	+		DZA65_RS10020	0.78	-0.0
2,122,841	+		DZA65_RS10020	0.81	+0.3
2,122,841	+		DZA65_RS10020	0.81	-0.6
2,122,842	-				-1.3
2,122,842	-		DZA65_RS10020	0.81	+1.2
2,122,845	+		DZA65_RS10020	0.81	+0.6
2,122,845	+		DZA65_RS10020	0.81	+0.3
2,122,845	+		DZA65_RS10020	0.81	-0.5
2,122,845	+		DZA65_RS10020	0.81	+1.3
2,122,845	+		DZA65_RS10020	0.81	+0.5
2,122,846	-		DZA65_RS10020	0.82	-0.5
2,122,846	-		DZA65_RS10020	0.82	-0.4
2,122,846	-		DZA65_RS10020	0.82	+1.9
2,122,846	-		DZA65_RS10020	0.82	+1.4
2,122,846	-		DZA65_RS10020	0.82	+2.0
2,122,846	-		DZA65_RS10020	0.82	-0.0
2,122,846	-		DZA65_RS10020	0.82	-1.0
2,122,846	-		DZA65_RS10020	0.82	-0.6
2,122,846	-		DZA65_RS10020	0.82	-0.5
2,122,846	-		DZA65_RS10020	0.82	-0.0
2,122,860	+		DZA65_RS10020	0.84	-0.3
2,122,951	+				+0.6
2,122,951	+				+0.9
2,122,951	+				+1.0
2,122,952	-				+0.3
2,122,952	-				+0.7
2,122,952	-				-0.3
2,122,967	+				+0.4
2,122,989	+				+0.4
2,123,019	+				-0.2
2,123,101	-				-0.7
2,123,101	-				+0.3
2,123,156	+				-1.1
2,123,157	-				+0.3
2,123,275	+				-2.0
2,123,319	+		DZA65_RS10025	0.13	-0.9
2,123,319	+		DZA65_RS10025	0.13	+0.3
2,123,320	-		DZA65_RS10025	0.13	-1.9
2,123,436	+		DZA65_RS10025	0.32	-0.7
2,123,437	-		DZA65_RS10025	0.33	-1.8
2,123,451	+		DZA65_RS10025	0.35	-1.0
2,123,451	+				-2.3
2,123,477	-		DZA65_RS10025	0.39	-1.3
2,123,620	+				-1.3
2,123,691	+		DZA65_RS10025	0.74	-2.7
2,123,727	-		DZA65_RS10025	0.80	-2.3
2,123,745	+		DZA65_RS10025	0.83	-2.5
2,123,745	+		DZA65_RS10025	0.83	-2.5
2,123,783	+		DZA65_RS10025	0.89	-1.3
2,123,783	+		DZA65_RS10025	0.89	-2.7
2,123,784	-		DZA65_RS10025	0.89	-2.0
2,123,784	-				+0.3
2,123,784	-		DZA65_RS10025	0.89	-2.3
2,123,878	-				-1.3