Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09950

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,101,990	+				+0.3
2,101,990	+				-0.6
2,101,990	+				+0.2
2,101,990	+				+2.1
2,101,991	-				+0.9
2,101,991	-				+0.2
2,101,991	-				-0.6
2,102,031	-		DZA65_RS09945	0.11	+1.9
2,102,031	-		DZA65_RS09945	0.11	-0.7
2,102,048	+		DZA65_RS09945	0.14	+1.2
2,102,123	+		DZA65_RS09945	0.25	+0.5
2,102,124	-		DZA65_RS09945	0.26	+0.4
2,102,215	-				+0.3
2,102,215	-		DZA65_RS09945	0.40	-0.4
2,102,248	+		DZA65_RS09945	0.45	-0.1
2,102,248	+		DZA65_RS09945	0.45	+0.4
2,102,248	+		DZA65_RS09945	0.45	+0.3
2,102,248	+		DZA65_RS09945	0.45	-0.1
2,102,248	+		DZA65_RS09945	0.45	+0.4
2,102,249	-		DZA65_RS09945	0.45	-1.5
2,102,249	-		DZA65_RS09945	0.45	+0.6
2,102,249	-		DZA65_RS09945	0.45	+1.2
2,102,263	-				-2.3
2,102,263	-		DZA65_RS09945	0.47	-2.0
2,102,378	-		DZA65_RS09945	0.65	+0.3
2,102,378	-		DZA65_RS09945	0.65	-0.1
2,102,378	-		DZA65_RS09945	0.65	-0.7
2,102,437	+		DZA65_RS09945	0.74	+0.4
2,102,437	+		DZA65_RS09945	0.74	-1.0
2,102,437	+		DZA65_RS09945	0.74	-0.7
2,102,438	-		DZA65_RS09945	0.74	-0.3
2,102,438	-		DZA65_RS09945	0.74	-0.6
2,102,456	+		DZA65_RS09945	0.77	-0.4
2,102,459	+		DZA65_RS09945	0.78	-0.4
2,102,459	+		DZA65_RS09945	0.78	+1.2
2,102,459	+		DZA65_RS09945	0.78	-0.2
2,102,459	+		DZA65_RS09945	0.78	-2.0
2,102,459	+		DZA65_RS09945	0.78	-0.5
2,102,460	-		DZA65_RS09945	0.78	-0.8
2,102,460	-		DZA65_RS09945	0.78	+0.4
2,102,460	-		DZA65_RS09945	0.78	-0.2
2,102,460	-		DZA65_RS09945	0.78	+0.7
2,102,587	+				-0.2
2,102,587	+				-0.8
2,102,587	+				-0.5
2,102,587	+				-2.3
2,102,587	+				-1.9
2,102,588	-				-1.1
2,102,588	-				+0.5
2,102,588	-				-0.5
2,102,588	-				+0.9
2,102,588	-				+0.7
2,102,588	-				-0.2
2,102,588	-				-2.0
2,102,588	-				+0.7
2,102,588	-				-0.4
2,102,592	+				+0.5
2,102,592	+				-1.0
2,102,592	+				-1.7
2,102,592	+				-1.0
2,102,593	-				-1.7
2,102,593	-				+0.5
2,102,593	-				-0.7
2,102,607	+				-1.3
2,102,607	+				-1.4
2,102,616	+				-0.8
2,102,616	+				-0.4
2,102,616	+				+0.8
2,102,617	-				+0.9
2,102,655	+				-0.3
2,102,736	+				-0.2
2,102,737	-				-1.0
2,102,737	-				-0.6
2,102,740	+				-0.2
2,102,740	+				-1.7
2,102,741	-				+0.7
2,102,741	-				-0.4
2,102,741	-				+1.5
2,102,741	-				-0.1
2,102,747	+				-1.2
2,102,761	+				+2.0
2,102,761	+				+2.0
2,102,762	-				-1.6
2,102,762	-				-0.2
2,102,777	-				-0.3
2,102,777	-				-1.9
2,102,802	-				-2.3
2,102,989	+		DZA65_RS09950	0.12	+0.2
2,102,990	-		DZA65_RS09950	0.12	-0.1
2,103,034	-		DZA65_RS09950	0.17	+0.6
2,103,050	+		DZA65_RS09950	0.19	+0.6
2,103,096	+		DZA65_RS09950	0.24	+0.3
2,103,097	-		DZA65_RS09950	0.24	-0.4
2,103,130	+		DZA65_RS09950	0.28	+0.1
2,103,131	-		DZA65_RS09950	0.28	-0.1
2,103,205	+		DZA65_RS09950	0.37	+0.5
2,103,217	+		DZA65_RS09950	0.38	+0.3
2,103,218	-		DZA65_RS09950	0.38	+0.1
2,103,218	-		DZA65_RS09950	0.38	-0.6
2,103,218	-		DZA65_RS09950	0.38	-0.7
2,103,341	+		DZA65_RS09950	0.52	-0.7
2,103,396	+		DZA65_RS09950	0.58	+0.2
2,103,485	+		DZA65_RS09950	0.68	-0.3
2,103,485	+		DZA65_RS09950	0.68	+0.1
2,103,486	-		DZA65_RS09950	0.69	+0.3
2,103,486	-		DZA65_RS09950	0.69	-1.0
2,103,486	-		DZA65_RS09950	0.69	+0.3
2,103,528	+		DZA65_RS09950	0.73	-0.5
2,103,529	-		DZA65_RS09950	0.74	+1.7
2,103,529	-		DZA65_RS09950	0.74	+1.2
2,103,529	-		DZA65_RS09950	0.74	+1.6
2,103,529	-		DZA65_RS09950	0.74	+0.3
2,103,529	-		DZA65_RS09950	0.74	+0.8
2,103,529	-		DZA65_RS09950	0.74	-0.3
2,103,681	+				-0.4
2,103,682	-				-0.8
2,103,682	-				-1.0
2,103,682	-				-0.9
2,103,682	-				-0.6
2,103,755	+				+0.9
2,103,756	-				-0.5
2,103,763	+				-0.7
2,103,763	+				-1.7
2,103,763	+				-1.1
2,103,763	+				+0.7
2,103,764	-				+0.3
2,103,766	+				-1.3
2,103,766	+				-0.1
2,103,767	-				+2.1
2,103,767	-				-0.8
2,103,767	-				+1.3
2,103,767	-				+0.7
2,103,875	-				+0.0
2,103,875	-				+0.7
2,103,875	-				+0.5
2,103,955	+		DZA65_RS09955	0.10	-1.2
2,104,005	+		DZA65_RS09955	0.16	-1.3
2,104,005	+		DZA65_RS09955	0.16	-1.0
2,104,005	+				-0.7
2,104,005	+		DZA65_RS09955	0.16	+0.2
2,104,006	-		DZA65_RS09955	0.16	-0.4
2,104,006	-		DZA65_RS09955	0.16	-0.5
2,104,008	+		DZA65_RS09955	0.16	-1.7
2,104,008	+		DZA65_RS09955	0.16	-0.2
2,104,008	+		DZA65_RS09955	0.16	+0.6
2,104,008	+		DZA65_RS09955	0.16	-0.4
2,104,008	+		DZA65_RS09955	0.16	-0.2
2,104,008	+		DZA65_RS09955	0.16	+0.1
2,104,009	-		DZA65_RS09955	0.16	-0.7
2,104,009	-		DZA65_RS09955	0.16	-1.0
2,104,009	-		DZA65_RS09955	0.16	+0.9
2,104,009	-		DZA65_RS09955	0.16	-1.7
2,104,009	-		DZA65_RS09955	0.16	-1.6
2,104,056	+		DZA65_RS09955	0.21	+0.6
2,104,199	+		DZA65_RS09955	0.37	+0.3
2,104,370	+		DZA65_RS09955	0.56	+0.8
2,104,371	-		DZA65_RS09955	0.56	-0.7
2,104,420	+		DZA65_RS09955	0.61	+0.1
2,104,420	+		DZA65_RS09955	0.61	-0.2
2,104,420	+		DZA65_RS09955	0.61	-0.3
2,104,421	-		DZA65_RS09955	0.61	+1.7
2,104,421	-		DZA65_RS09955	0.61	+0.9
2,104,421	-		DZA65_RS09955	0.61	+0.6
2,104,421	-		DZA65_RS09955	0.61	+0.7
2,104,421	-		DZA65_RS09955	0.61	-0.3
2,104,433	+		DZA65_RS09955	0.63	+0.6
2,104,433	+		DZA65_RS09955	0.63	-0.4
2,104,433	+		DZA65_RS09955	0.63	-0.5
2,104,433	+		DZA65_RS09955	0.63	-0.7
2,104,433	+		DZA65_RS09955	0.63	+0.4
2,104,433	+		DZA65_RS09955	0.63	+0.3
2,104,433	+		DZA65_RS09955	0.63	-0.1
2,104,434	-		DZA65_RS09955	0.63	+0.3
2,104,434	-		DZA65_RS09955	0.63	+0.8
2,104,465	+		DZA65_RS09955	0.66	-0.9
2,104,511	-		DZA65_RS09955	0.71	-1.0
2,104,563	+		DZA65_RS09955	0.77	-0.3
2,104,563	+		DZA65_RS09955	0.77	-2.0
2,104,563	+				-0.3
2,104,564	-		DZA65_RS09955	0.77	-1.0
2,104,564	-		DZA65_RS09955	0.77	+1.0
2,104,564	-		DZA65_RS09955	0.77	-0.3
2,104,564	-		DZA65_RS09955	0.77	+0.6
2,104,564	-		DZA65_RS09955	0.77	+0.3
2,104,564	-		DZA65_RS09955	0.77	+1.4
2,104,564	-		DZA65_RS09955	0.77	+1.1
2,104,616	-		DZA65_RS09955	0.83	+0.3
2,104,658	+		DZA65_RS09955	0.87	+0.6
2,104,658	+		DZA65_RS09955	0.87	+0.5
2,104,658	+		DZA65_RS09955	0.87	+0.6
2,104,658	+		DZA65_RS09955	0.87	-2.0
2,104,659	-		DZA65_RS09955	0.88	+0.3
2,104,659	-		DZA65_RS09955	0.88	+0.0
2,104,667	+		DZA65_RS09955	0.88	-0.5
2,104,668	-		DZA65_RS09955	0.89	-1.3
2,104,668	-		DZA65_RS09955	0.89	+0.7