Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07035 and DZA65_RS07040 are separated by 24 nucleotides DZA65_RS07040 and DZA65_RS07045 are separated by 236 nucleotides DZA65_RS07045 and DZA65_RS07050 are separated by 291 nucleotides
DZA65_RS07035: DZA65_RS07035 - hypothetical protein, at 1,456,732 to 1,457,982
_RS07035
DZA65_RS07040: DZA65_RS07040 - sugar ABC transporter substrate-binding protein, at 1,458,007 to 1,459,083
_RS07040
DZA65_RS07045: DZA65_RS07045 - hypothetical protein, at 1,459,320 to 1,459,748
_RS07045
DZA65_RS07050: DZA65_RS07050 - methionine--tRNA ligase, at 1,460,040 to 1,462,070
_RS07050
Position (kb) 1458
1459
1460 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1457.036 kb on + strand, within DZA65_RS07035 at 1457.036 kb on + strand, within DZA65_RS07035 at 1457.037 kb on - strand, within DZA65_RS07035 at 1457.037 kb on - strand, within DZA65_RS07035 at 1457.346 kb on - strand, within DZA65_RS07035 at 1457.430 kb on + strand, within DZA65_RS07035 at 1457.498 kb on + strand, within DZA65_RS07035 at 1457.498 kb on + strand, within DZA65_RS07035 at 1457.498 kb on + strand, within DZA65_RS07035 at 1457.499 kb on - strand, within DZA65_RS07035 at 1457.519 kb on + strand, within DZA65_RS07035 at 1457.519 kb on + strand, within DZA65_RS07035 at 1457.519 kb on + strand, within DZA65_RS07035 at 1457.519 kb on + strand, within DZA65_RS07035 at 1457.554 kb on + strand, within DZA65_RS07035 at 1457.592 kb on + strand, within DZA65_RS07035 at 1457.592 kb on + strand, within DZA65_RS07035 at 1457.592 kb on + strand, within DZA65_RS07035 at 1457.592 kb on + strand, within DZA65_RS07035 at 1457.669 kb on + strand, within DZA65_RS07035 at 1457.670 kb on - strand, within DZA65_RS07035 at 1457.670 kb on - strand, within DZA65_RS07035 at 1457.672 kb on + strand, within DZA65_RS07035 at 1457.673 kb on - strand, within DZA65_RS07035 at 1457.673 kb on - strand, within DZA65_RS07035 at 1457.862 kb on + strand at 1457.862 kb on + strand at 1457.863 kb on - strand at 1457.863 kb on - strand at 1457.863 kb on - strand at 1457.864 kb on + strand at 1457.864 kb on + strand at 1457.864 kb on + strand at 1457.864 kb on + strand at 1457.864 kb on + strand at 1457.864 kb on + strand at 1457.864 kb on + strand at 1457.865 kb on - strand at 1457.865 kb on - strand at 1457.865 kb on - strand at 1457.865 kb on - strand at 1457.894 kb on - strand at 1457.932 kb on + strand at 1457.951 kb on + strand at 1457.952 kb on - strand at 1457.984 kb on + strand at 1457.984 kb on + strand at 1457.984 kb on + strand at 1457.984 kb on + strand at 1457.984 kb on + strand at 1457.985 kb on - strand at 1458.048 kb on + strand at 1458.048 kb on + strand at 1458.162 kb on - strand, within DZA65_RS07040 at 1458.162 kb on - strand, within DZA65_RS07040 at 1458.187 kb on + strand, within DZA65_RS07040 at 1458.188 kb on - strand, within DZA65_RS07040 at 1458.264 kb on + strand, within DZA65_RS07040 at 1458.265 kb on - strand, within DZA65_RS07040 at 1458.303 kb on + strand, within DZA65_RS07040 at 1458.303 kb on + strand, within DZA65_RS07040 at 1458.304 kb on - strand, within DZA65_RS07040 at 1458.314 kb on + strand, within DZA65_RS07040 at 1458.315 kb on - strand, within DZA65_RS07040 at 1458.315 kb on - strand, within DZA65_RS07040 at 1458.315 kb on - strand, within DZA65_RS07040 at 1458.356 kb on + strand, within DZA65_RS07040 at 1458.356 kb on + strand, within DZA65_RS07040 at 1458.356 kb on + strand, within DZA65_RS07040 at 1458.356 kb on + strand, within DZA65_RS07040 at 1458.356 kb on + strand, within DZA65_RS07040 at 1458.356 kb on + strand, within DZA65_RS07040 at 1458.357 kb on - strand, within DZA65_RS07040 at 1458.357 kb on - strand, within DZA65_RS07040 at 1458.357 kb on - strand, within DZA65_RS07040 at 1458.357 kb on - strand, within DZA65_RS07040 at 1458.442 kb on - strand, within DZA65_RS07040 at 1458.442 kb on - strand, within DZA65_RS07040 at 1458.510 kb on + strand, within DZA65_RS07040 at 1458.510 kb on + strand, within DZA65_RS07040 at 1458.530 kb on + strand, within DZA65_RS07040 at 1458.530 kb on + strand, within DZA65_RS07040 at 1458.696 kb on + strand, within DZA65_RS07040 at 1458.697 kb on - strand, within DZA65_RS07040 at 1458.756 kb on - strand, within DZA65_RS07040 at 1458.791 kb on + strand, within DZA65_RS07040 at 1458.791 kb on + strand, within DZA65_RS07040 at 1458.792 kb on - strand, within DZA65_RS07040 at 1458.792 kb on - strand, within DZA65_RS07040 at 1458.792 kb on - strand, within DZA65_RS07040 at 1458.792 kb on - strand, within DZA65_RS07040 at 1458.792 kb on - strand, within DZA65_RS07040 at 1459.109 kb on - strand at 1459.124 kb on - strand at 1459.206 kb on + strand at 1459.206 kb on + strand at 1459.207 kb on - strand at 1459.207 kb on - strand at 1459.207 kb on - strand at 1459.207 kb on - strand at 1459.207 kb on - strand at 1459.207 kb on - strand at 1459.221 kb on + strand at 1459.226 kb on + strand at 1459.227 kb on - strand at 1459.227 kb on - strand at 1459.227 kb on - strand at 1459.227 kb on - strand at 1459.227 kb on - strand at 1459.227 kb on - strand at 1459.321 kb on + strand at 1459.321 kb on + strand at 1459.321 kb on + strand at 1459.321 kb on + strand at 1459.321 kb on + strand at 1459.321 kb on + strand at 1459.322 kb on - strand at 1459.363 kb on + strand, within DZA65_RS07045 at 1459.363 kb on + strand, within DZA65_RS07045 at 1459.363 kb on + strand, within DZA65_RS07045 at 1459.364 kb on - strand, within DZA65_RS07045 at 1459.364 kb on - strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.405 kb on + strand, within DZA65_RS07045 at 1459.406 kb on - strand, within DZA65_RS07045 at 1459.406 kb on - strand, within DZA65_RS07045 at 1459.406 kb on - strand, within DZA65_RS07045 at 1459.406 kb on - strand, within DZA65_RS07045 at 1459.406 kb on - strand, within DZA65_RS07045 at 1459.406 kb on - strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.411 kb on + strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.412 kb on - strand, within DZA65_RS07045 at 1459.540 kb on + strand, within DZA65_RS07045 at 1459.540 kb on + strand, within DZA65_RS07045 at 1459.540 kb on + strand, within DZA65_RS07045 at 1459.541 kb on - strand, within DZA65_RS07045 at 1459.541 kb on - strand, within DZA65_RS07045 at 1459.554 kb on + strand, within DZA65_RS07045 at 1459.555 kb on - strand, within DZA65_RS07045 at 1459.555 kb on - strand, within DZA65_RS07045 at 1459.555 kb on - strand, within DZA65_RS07045 at 1459.555 kb on - strand, within DZA65_RS07045 at 1459.656 kb on + strand, within DZA65_RS07045 at 1459.656 kb on + strand, within DZA65_RS07045 at 1459.656 kb on + strand, within DZA65_RS07045 at 1459.656 kb on + strand, within DZA65_RS07045 at 1459.657 kb on - strand, within DZA65_RS07045 at 1459.739 kb on + strand at 1459.739 kb on + strand at 1459.739 kb on + strand at 1459.740 kb on - strand at 1459.740 kb on - strand at 1459.740 kb on - strand at 1459.754 kb on - strand at 1459.774 kb on + strand at 1459.775 kb on - strand at 1459.775 kb on - strand at 1459.775 kb on - strand at 1459.775 kb on - strand at 1459.792 kb on + strand at 1459.793 kb on - strand at 1459.793 kb on - strand at 1459.793 kb on - strand at 1459.799 kb on + strand at 1459.799 kb on + strand at 1459.799 kb on + strand at 1459.799 kb on + strand at 1459.799 kb on + strand at 1459.868 kb on - strand at 1459.868 kb on - strand at 1459.911 kb on + strand at 1459.982 kb on + strand at 1459.984 kb on + strand at 1459.984 kb on + strand at 1459.985 kb on - strand at 1459.985 kb on - strand at 1460.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 1,457,036 + DZA65_RS07035 0.24 +0.6 1,457,036 + DZA65_RS07035 0.24 -0.4 1,457,037 - DZA65_RS07035 0.24 +0.4 1,457,037 - DZA65_RS07035 0.24 -0.4 1,457,346 - DZA65_RS07035 0.49 -0.1 1,457,430 + DZA65_RS07035 0.56 +1.3 1,457,498 + DZA65_RS07035 0.61 +1.2 1,457,498 + DZA65_RS07035 0.61 +1.3 1,457,498 + DZA65_RS07035 0.61 -0.6 1,457,499 - DZA65_RS07035 0.61 -0.1 1,457,519 + DZA65_RS07035 0.63 -1.0 1,457,519 + DZA65_RS07035 0.63 -0.1 1,457,519 + DZA65_RS07035 0.63 -1.1 1,457,519 + DZA65_RS07035 0.63 +0.3 1,457,554 + DZA65_RS07035 0.66 +0.4 1,457,592 + DZA65_RS07035 0.69 -0.2 1,457,592 + DZA65_RS07035 0.69 +1.0 1,457,592 + DZA65_RS07035 0.69 -1.6 1,457,592 + DZA65_RS07035 0.69 -0.1 1,457,669 + DZA65_RS07035 0.75 +0.4 1,457,670 - DZA65_RS07035 0.75 -0.4 1,457,670 - DZA65_RS07035 0.75 -0.6 1,457,672 + DZA65_RS07035 0.75 -2.0 1,457,673 - DZA65_RS07035 0.75 -2.1 1,457,673 - DZA65_RS07035 0.75 +0.9 1,457,862 + -1.9 1,457,862 + -0.9 1,457,863 - +0.8 1,457,863 - -0.7 1,457,863 - -0.7 1,457,864 + +0.8 1,457,864 + -1.1 1,457,864 + +1.4 1,457,864 + -1.9 1,457,864 + +1.3 1,457,864 + -0.6 1,457,864 + -0.3 1,457,865 - -0.1 1,457,865 - +1.0 1,457,865 - +0.8 1,457,865 - -0.2 1,457,894 - +0.4 1,457,932 + -0.8 1,457,951 + +0.0 1,457,952 - -1.1 1,457,984 + -1.1 1,457,984 + -0.0 1,457,984 + -0.0 1,457,984 + -1.1 1,457,984 + +0.7 1,457,985 - +0.4 1,458,048 + +0.2 1,458,048 + -1.6 1,458,162 - DZA65_RS07040 0.14 +0.6 1,458,162 - DZA65_RS07040 0.14 +0.9 1,458,187 + DZA65_RS07040 0.17 +1.4 1,458,188 - DZA65_RS07040 0.17 -1.4 1,458,264 + DZA65_RS07040 0.24 -2.1 1,458,265 - DZA65_RS07040 0.24 -1.4 1,458,303 + DZA65_RS07040 0.27 -1.6 1,458,303 + DZA65_RS07040 0.27 -0.6 1,458,304 - DZA65_RS07040 0.28 -1.6 1,458,314 + DZA65_RS07040 0.29 -0.3 1,458,315 - DZA65_RS07040 0.29 -0.6 1,458,315 - DZA65_RS07040 0.29 +0.6 1,458,315 - DZA65_RS07040 0.29 +0.0 1,458,356 + DZA65_RS07040 0.32 -0.6 1,458,356 + DZA65_RS07040 0.32 +0.3 1,458,356 + DZA65_RS07040 0.32 +0.8 1,458,356 + DZA65_RS07040 0.32 +0.4 1,458,356 + DZA65_RS07040 0.32 -0.9 1,458,356 + DZA65_RS07040 0.32 -0.0 1,458,357 - DZA65_RS07040 0.32 +0.4 1,458,357 - DZA65_RS07040 0.32 +3.6 1,458,357 - DZA65_RS07040 0.32 -1.7 1,458,357 - DZA65_RS07040 0.32 +1.5 1,458,442 - DZA65_RS07040 0.40 +0.9 1,458,442 - DZA65_RS07040 0.40 +0.7 1,458,510 + DZA65_RS07040 0.47 -0.1 1,458,510 + DZA65_RS07040 0.47 -2.1 1,458,530 + DZA65_RS07040 0.49 -1.6 1,458,530 + DZA65_RS07040 0.49 +1.9 1,458,696 + DZA65_RS07040 0.64 -0.2 1,458,697 - DZA65_RS07040 0.64 +1.6 1,458,756 - DZA65_RS07040 0.70 +1.4 1,458,791 + DZA65_RS07040 0.73 +0.4 1,458,791 + DZA65_RS07040 0.73 -1.9 1,458,792 - DZA65_RS07040 0.73 -0.4 1,458,792 - DZA65_RS07040 0.73 +1.7 1,458,792 - DZA65_RS07040 0.73 -1.4 1,458,792 - DZA65_RS07040 0.73 -1.6 1,458,792 - DZA65_RS07040 0.73 +0.4 1,459,109 - +0.9 1,459,124 - +1.4 1,459,206 + +1.6 1,459,206 + -2.1 1,459,207 - -1.4 1,459,207 - +1.0 1,459,207 - +0.4 1,459,207 - +2.3 1,459,207 - -0.2 1,459,207 - +0.6 1,459,221 + +1.0 1,459,226 + -1.1 1,459,227 - -0.2 1,459,227 - +0.4 1,459,227 - -2.1 1,459,227 - -1.0 1,459,227 - -1.6 1,459,227 - -0.3 1,459,321 + -0.1 1,459,321 + +1.0 1,459,321 + -0.8 1,459,321 + +0.1 1,459,321 + -0.6 1,459,321 + -0.4 1,459,322 - -0.1 1,459,363 + DZA65_RS07045 0.10 -2.1 1,459,363 + DZA65_RS07045 0.10 -1.1 1,459,363 + DZA65_RS07045 0.10 +0.1 1,459,364 - DZA65_RS07045 0.10 -1.6 1,459,364 - DZA65_RS07045 0.10 +0.4 1,459,405 + DZA65_RS07045 0.20 -1.1 1,459,405 + DZA65_RS07045 0.20 -0.7 1,459,405 + DZA65_RS07045 0.20 +1.4 1,459,405 + DZA65_RS07045 0.20 -0.3 1,459,405 + DZA65_RS07045 0.20 -0.6 1,459,405 + DZA65_RS07045 0.20 -1.6 1,459,405 + DZA65_RS07045 0.20 +1.4 1,459,405 + DZA65_RS07045 0.20 +0.4 1,459,406 - DZA65_RS07045 0.20 -0.3 1,459,406 - DZA65_RS07045 0.20 -1.1 1,459,406 - DZA65_RS07045 0.20 -1.1 1,459,406 - DZA65_RS07045 0.20 -0.1 1,459,406 - DZA65_RS07045 0.20 +0.4 1,459,406 - DZA65_RS07045 0.20 -0.6 1,459,411 + DZA65_RS07045 0.21 -0.4 1,459,411 + DZA65_RS07045 0.21 -0.9 1,459,411 + DZA65_RS07045 0.21 -0.3 1,459,411 + DZA65_RS07045 0.21 +0.3 1,459,411 + DZA65_RS07045 0.21 +0.1 1,459,411 + DZA65_RS07045 0.21 -1.1 1,459,411 + DZA65_RS07045 0.21 -0.6 1,459,411 + DZA65_RS07045 0.21 -0.8 1,459,411 + DZA65_RS07045 0.21 -0.2 1,459,411 + DZA65_RS07045 0.21 -2.4 1,459,411 + DZA65_RS07045 0.21 -1.1 1,459,411 + DZA65_RS07045 0.21 -1.1 1,459,411 + DZA65_RS07045 0.21 -1.9 1,459,411 + DZA65_RS07045 0.21 -0.7 1,459,412 - DZA65_RS07045 0.21 +0.4 1,459,412 - DZA65_RS07045 0.21 +0.4 1,459,412 - -1.1 1,459,412 - DZA65_RS07045 0.21 +0.6 1,459,412 - DZA65_RS07045 0.21 +1.4 1,459,412 - DZA65_RS07045 0.21 +1.8 1,459,412 - DZA65_RS07045 0.21 +0.4 1,459,412 - DZA65_RS07045 0.21 +0.4 1,459,412 - DZA65_RS07045 0.21 -0.8 1,459,412 - DZA65_RS07045 0.21 -0.6 1,459,540 + DZA65_RS07045 0.51 +0.4 1,459,540 + DZA65_RS07045 0.51 -0.2 1,459,540 + DZA65_RS07045 0.51 +0.2 1,459,541 - DZA65_RS07045 0.52 -0.4 1,459,541 - DZA65_RS07045 0.52 -0.1 1,459,554 + DZA65_RS07045 0.55 -0.1 1,459,555 - DZA65_RS07045 0.55 +1.0 1,459,555 - DZA65_RS07045 0.55 +0.6 1,459,555 - DZA65_RS07045 0.55 -0.6 1,459,555 - DZA65_RS07045 0.55 -0.1 1,459,656 + DZA65_RS07045 0.78 +0.2 1,459,656 + DZA65_RS07045 0.78 -0.1 1,459,656 + DZA65_RS07045 0.78 -0.6 1,459,656 + DZA65_RS07045 0.78 -0.3 1,459,657 - DZA65_RS07045 0.79 +0.2 1,459,739 + -0.2 1,459,739 + -0.1 1,459,739 + +0.9 1,459,740 - -0.4 1,459,740 - +2.0 1,459,740 - -0.1 1,459,754 - +1.7 1,459,774 + -1.1 1,459,775 - +0.2 1,459,775 - +1.8 1,459,775 - +0.6 1,459,775 - +0.9 1,459,792 + -0.4 1,459,793 - -0.1 1,459,793 - +0.1 1,459,793 - -1.1 1,459,799 + +0.4 1,459,799 + +0.3 1,459,799 + -1.9 1,459,799 + +0.9 1,459,799 + -0.1 1,459,868 - -0.3 1,459,868 - -1.3 1,459,911 + +1.3 1,459,982 + +0.1 1,459,984 + +0.7 1,459,984 + +1.2 1,459,985 - -0.6 1,459,985 - -0.9 1,460,042 - +0.9
Or see this region's nucleotide sequence