Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05405

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
1,110,506	+		DZA65_RS05400	0.16	-1.3
1,110,507	-		DZA65_RS05400	0.16	+0.8
1,110,545	+		DZA65_RS05400	0.19	-0.8
1,110,546	-		DZA65_RS05400	0.20	+1.3
1,110,546	-		DZA65_RS05400	0.20	-2.2
1,110,546	-		DZA65_RS05400	0.20	-2.0
1,110,546	-		DZA65_RS05400	0.20	-0.8
1,110,546	-		DZA65_RS05400	0.20	-0.2
1,110,786	+		DZA65_RS05400	0.41	+0.3
1,110,786	+		DZA65_RS05400	0.41	+1.1
1,110,786	+		DZA65_RS05400	0.41	+0.6
1,110,787	-		DZA65_RS05400	0.41	+2.2
1,110,787	-		DZA65_RS05400	0.41	+1.5
1,110,805	+		DZA65_RS05400	0.43	-0.1
1,110,805	+		DZA65_RS05400	0.43	-2.6
1,110,805	+		DZA65_RS05400	0.43	-0.9
1,110,805	+		DZA65_RS05400	0.43	+0.4
1,110,805	+		DZA65_RS05400	0.43	+1.8
1,110,805	+		DZA65_RS05400	0.43	-0.7
1,110,806	-		DZA65_RS05400	0.43	+0.4
1,110,806	-		DZA65_RS05400	0.43	+1.6
1,110,806	-		DZA65_RS05400	0.43	-0.4
1,110,806	-		DZA65_RS05400	0.43	-0.3
1,110,820	+		DZA65_RS05400	0.44	+0.2
1,110,820	+		DZA65_RS05400	0.44	-0.0
1,110,820	+		DZA65_RS05400	0.44	+0.1
1,110,821	-		DZA65_RS05400	0.45	-0.3
1,110,821	-		DZA65_RS05400	0.45	-1.0
1,110,828	+		DZA65_RS05400	0.45	+0.6
1,110,844	+		DZA65_RS05400	0.47	-0.4
1,110,844	+		DZA65_RS05400	0.47	+1.0
1,110,844	+		DZA65_RS05400	0.47	+0.6
1,110,844	+		DZA65_RS05400	0.47	-1.6
1,110,844	+		DZA65_RS05400	0.47	-1.0
1,110,844	+		DZA65_RS05400	0.47	+0.6
1,110,844	+		DZA65_RS05400	0.47	-1.6
1,110,844	+				+1.4
1,110,845	-		DZA65_RS05400	0.47	+0.4
1,110,845	-		DZA65_RS05400	0.47	-1.2
1,110,845	-		DZA65_RS05400	0.47	-1.7
1,110,845	-		DZA65_RS05400	0.47	+0.8
1,110,845	-		DZA65_RS05400	0.47	-2.0
1,110,845	-		DZA65_RS05400	0.47	-2.6
1,110,845	-		DZA65_RS05400	0.47	-0.4
1,110,845	-		DZA65_RS05400	0.47	+0.6
1,110,847	-				-1.2
1,110,966	+		DZA65_RS05400	0.58	-3.3
1,110,967	-		DZA65_RS05400	0.58	-1.4
1,110,967	-		DZA65_RS05400	0.58	-1.0
1,110,967	-		DZA65_RS05400	0.58	+0.6
1,111,009	+		DZA65_RS05400	0.62	-0.4
1,111,010	-		DZA65_RS05400	0.62	-0.2
1,111,010	-		DZA65_RS05400	0.62	-0.4
1,111,029	+		DZA65_RS05400	0.63	-0.1
1,111,029	+		DZA65_RS05400	0.63	-0.3
1,111,030	-		DZA65_RS05400	0.63	+1.0
1,111,030	-		DZA65_RS05400	0.63	-1.7
1,111,030	-		DZA65_RS05400	0.63	-0.9
1,111,030	-		DZA65_RS05400	0.63	-1.8
1,111,140	+		DZA65_RS05400	0.73	-0.0
1,111,140	+		DZA65_RS05400	0.73	+1.9
1,111,140	+		DZA65_RS05400	0.73	-0.7
1,111,140	+		DZA65_RS05400	0.73	+1.2
1,111,141	-				+0.6
1,111,141	-		DZA65_RS05400	0.74	-0.6
1,111,141	-		DZA65_RS05400	0.74	-0.2
1,111,141	-		DZA65_RS05400	0.74	-1.0
1,111,141	-		DZA65_RS05400	0.74	+1.3
1,111,141	-		DZA65_RS05400	0.74	-0.2
1,111,141	-		DZA65_RS05400	0.74	+0.3
1,111,144	+		DZA65_RS05400	0.74	-0.4
1,111,144	+		DZA65_RS05400	0.74	+2.6
1,111,145	-		DZA65_RS05400	0.74	-1.4
1,111,145	-		DZA65_RS05400	0.74	-1.6
1,111,145	-		DZA65_RS05400	0.74	-0.7
1,111,145	-		DZA65_RS05400	0.74	+0.3
1,111,145	-		DZA65_RS05400	0.74	+0.6
1,111,162	-		DZA65_RS05400	0.75	+0.6
1,111,245	+		DZA65_RS05400	0.83	+0.2
1,111,245	+		DZA65_RS05400	0.83	-0.0
1,111,246	-		DZA65_RS05400	0.83	-0.1
1,111,246	-		DZA65_RS05400	0.83	-1.4
1,111,246	-		DZA65_RS05400	0.83	-0.6
1,111,246	-		DZA65_RS05400	0.83	+0.3
1,111,354	+				-0.0
1,111,354	+				+0.6
1,111,392	+				+1.2
1,111,392	+				-0.1
1,111,393	-				+2.3
1,111,393	-				-0.6
1,111,510	+				-1.3
1,111,511	-				-0.2
1,111,511	-				-3.6
1,111,534	+				-1.1
1,111,575	-		DZA65_RS05405	0.11	+0.8
1,111,621	+		DZA65_RS05405	0.17	+1.6
1,111,640	+		DZA65_RS05405	0.20	+0.4
1,111,640	+		DZA65_RS05405	0.20	+0.6
1,111,640	+		DZA65_RS05405	0.20	-1.7
1,111,641	-		DZA65_RS05405	0.20	-0.4
1,111,642	+		DZA65_RS05405	0.20	+2.6
1,111,643	-		DZA65_RS05405	0.20	-0.4
1,111,643	-		DZA65_RS05405	0.20	+0.8
1,111,756	+		DZA65_RS05405	0.35	-0.7
1,111,823	+		DZA65_RS05405	0.44	+0.8
1,111,824	-		DZA65_RS05405	0.44	+0.6
1,111,852	+		DZA65_RS05405	0.48	-1.7
1,111,853	-		DZA65_RS05405	0.48	+0.6
1,111,862	+		DZA65_RS05405	0.49	+0.2
1,111,862	+		DZA65_RS05405	0.49	-0.4
1,111,863	-		DZA65_RS05405	0.49	+1.2
1,111,887	+		DZA65_RS05405	0.52	+0.2
1,111,888	-		DZA65_RS05405	0.52	+2.2
1,112,054	+				+0.6
1,112,055	-		DZA65_RS05405	0.74	-0.6
1,112,055	-		DZA65_RS05405	0.74	-0.6
1,112,055	-		DZA65_RS05405	0.74	-0.8
1,112,140	+		DZA65_RS05405	0.85	+0.1
1,112,140	+		DZA65_RS05405	0.85	-1.0
1,112,140	+		DZA65_RS05405	0.85	-1.2
1,112,140	+		DZA65_RS05405	0.85	+0.8
1,112,141	-		DZA65_RS05405	0.86	+0.3
1,112,141	-		DZA65_RS05405	0.86	+1.4
1,112,141	-		DZA65_RS05405	0.86	+1.4
1,112,141	-		DZA65_RS05405	0.86	-0.1
1,112,143	+		DZA65_RS05405	0.86	-0.4
1,112,143	+		DZA65_RS05405	0.86	-0.5
1,112,143	+		DZA65_RS05405	0.86	-0.0
1,112,143	+		DZA65_RS05405	0.86	+1.2
1,112,191	+				-0.0
1,112,191	+				+1.9
1,112,232	+				-0.4
1,112,233	-				+1.2
1,112,233	-				+0.5
1,112,233	-				+0.3
1,112,233	-				+1.0
1,112,242	+				+0.0
1,112,242	+				-0.0
1,112,242	+				-0.4
1,112,243	-				+1.6
1,112,243	-				-2.7
1,112,243	-				-0.2
1,112,243	-				-0.1
1,112,243	-				+1.6
1,112,243	-				+1.2
1,112,243	-				+0.1
1,112,243	-				-0.7
1,112,321	-				-1.6
1,112,332	+				+0.1
1,112,332	+				-1.7
1,112,332	+				-1.0
1,112,332	+				+1.1
1,112,332	+				+1.9
1,112,333	-				+0.6
1,112,333	-				-2.6
1,112,333	-				+1.6
1,112,333	-				+1.6
1,112,354	+				+1.8
1,112,354	+				-1.0
1,112,355	-				-1.9
1,112,355	-				+1.2
1,112,428	+				-1.0
1,112,437	+				-2.2
1,112,629	+		DZA65_RS05410	0.24	+0.6
1,112,629	+		DZA65_RS05410	0.24	-1.0
1,112,629	+		DZA65_RS05410	0.24	-2.0
1,112,630	-		DZA65_RS05410	0.24	+0.6
1,112,726	-		DZA65_RS05410	0.31	+1.2
1,112,726	-		DZA65_RS05410	0.31	+0.4
1,112,775	+		DZA65_RS05410	0.35	-1.0
1,112,785	+		DZA65_RS05410	0.35	-1.6
1,112,785	+		DZA65_RS05410	0.35	-0.4
1,112,785	+		DZA65_RS05410	0.35	-1.4
1,112,785	+		DZA65_RS05410	0.35	-1.7
1,112,786	-		DZA65_RS05410	0.35	-0.6
1,112,786	-		DZA65_RS05410	0.35	-0.0
1,112,786	-		DZA65_RS05410	0.35	-0.7
1,112,855	+		DZA65_RS05410	0.40	+0.6
1,112,855	+		DZA65_RS05410	0.40	-0.4
1,112,856	-		DZA65_RS05410	0.40	-0.0
1,112,856	-		DZA65_RS05410	0.40	-0.3
1,112,856	-		DZA65_RS05410	0.40	+0.4
1,112,869	+		DZA65_RS05410	0.41	-0.4
1,112,870	-		DZA65_RS05410	0.41	+0.4
1,112,870	-		DZA65_RS05410	0.41	-3.2
1,112,870	-		DZA65_RS05410	0.41	-1.6
1,112,870	-		DZA65_RS05410	0.41	-1.7
1,112,983	-		DZA65_RS05410	0.50	+0.3
1,112,983	-		DZA65_RS05410	0.50	-0.9
1,113,035	+		DZA65_RS05410	0.54	+0.0
1,113,036	-		DZA65_RS05410	0.54	-0.3
1,113,141	+		DZA65_RS05410	0.61	-0.4
1,113,142	-		DZA65_RS05410	0.61	+0.3
1,113,142	-		DZA65_RS05410	0.61	+1.0
1,113,172	+		DZA65_RS05410	0.64	-0.0
1,113,172	+		DZA65_RS05410	0.64	-0.4
1,113,172	+		DZA65_RS05410	0.64	+0.6
1,113,172	+		DZA65_RS05410	0.64	+0.4
1,113,173	-		DZA65_RS05410	0.64	+0.3
1,113,178	+				-1.0
1,113,178	+		DZA65_RS05410	0.64	+1.6