Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18575

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
4,002,204	+				+0.3
4,002,205	-				+1.1
4,002,254	-				+0.1
4,002,374	+		DZA65_RS18570	0.14	+0.6
4,002,374	+		DZA65_RS18570	0.14	-0.4
4,002,374	+		DZA65_RS18570	0.14	+1.1
4,002,375	-		DZA65_RS18570	0.14	+1.6
4,002,375	-		DZA65_RS18570	0.14	-1.4
4,002,375	-		DZA65_RS18570	0.14	-0.6
4,002,380	+		DZA65_RS18570	0.15	+0.4
4,002,380	+		DZA65_RS18570	0.15	+0.0
4,002,381	-		DZA65_RS18570	0.15	-0.6
4,002,381	-		DZA65_RS18570	0.15	-1.0
4,002,398	+		DZA65_RS18570	0.17	-2.2
4,002,398	+		DZA65_RS18570	0.17	+1.0
4,002,398	+		DZA65_RS18570	0.17	+0.2
4,002,398	+				-2.4
4,002,398	+		DZA65_RS18570	0.17	+0.2
4,002,398	+		DZA65_RS18570	0.17	-0.1
4,002,399	-		DZA65_RS18570	0.17	-1.6
4,002,399	-		DZA65_RS18570	0.17	-0.4
4,002,399	-		DZA65_RS18570	0.17	+0.6
4,002,399	-		DZA65_RS18570	0.17	-0.6
4,002,399	-		DZA65_RS18570	0.17	-0.3
4,002,439	+		DZA65_RS18570	0.22	+0.8
4,002,484	-		DZA65_RS18570	0.28	-0.8
4,002,602	+		DZA65_RS18570	0.43	-0.2
4,002,606	+		DZA65_RS18570	0.44	-1.4
4,002,607	-		DZA65_RS18570	0.44	-0.8
4,002,607	-				+0.6
4,002,629	+		DZA65_RS18570	0.46	-1.2
4,002,629	+		DZA65_RS18570	0.46	-2.2
4,002,629	+		DZA65_RS18570	0.46	-1.7
4,002,629	+		DZA65_RS18570	0.46	-0.6
4,002,630	-		DZA65_RS18570	0.47	-0.4
4,002,630	-		DZA65_RS18570	0.47	-1.0
4,002,630	-		DZA65_RS18570	0.47	-0.8
4,002,630	-		DZA65_RS18570	0.47	-0.4
4,002,630	-		DZA65_RS18570	0.47	-0.4
4,002,683	+		DZA65_RS18570	0.53	+0.0
4,002,684	-		DZA65_RS18570	0.54	+0.6
4,002,684	-		DZA65_RS18570	0.54	-1.4
4,002,692	-		DZA65_RS18570	0.55	+1.3
4,002,960	-		DZA65_RS18570	0.89	-0.6
4,002,997	+				-0.8
4,002,997	+				-1.3
4,002,998	-				+0.5
4,002,998	-				+0.7
4,002,998	-				+1.0
4,003,000	+				-0.2
4,003,000	+				+0.6
4,003,000	+				+0.5
4,003,001	-				+0.2
4,003,001	-				-3.8
4,003,001	-				-1.0
4,003,087	+				-1.7
4,003,087	+				+1.0
4,003,087	+				+0.9
4,003,087	+				+0.3
4,003,087	+				-0.5
4,003,087	+				-0.1
4,003,087	+				+1.0
4,003,088	-				+0.2
4,003,088	-				+1.6
4,003,088	-				-0.4
4,003,088	-				+1.6
4,003,088	-				-0.6
4,003,088	-				-1.1
4,003,121	+				+0.5
4,003,121	+				-0.0
4,003,122	-				+1.2
4,003,244	+		DZA65_RS18575	0.21	+1.2
4,003,244	+		DZA65_RS18575	0.21	+0.1
4,003,245	-		DZA65_RS18575	0.21	+0.5
4,003,245	-		DZA65_RS18575	0.21	+0.6
4,003,245	-		DZA65_RS18575	0.21	-1.4
4,003,252	+		DZA65_RS18575	0.22	-0.4
4,003,252	+		DZA65_RS18575	0.22	-1.7
4,003,253	-		DZA65_RS18575	0.22	-0.1
4,003,265	-		DZA65_RS18575	0.23	+0.0
4,003,453	+		DZA65_RS18575	0.46	+0.0
4,003,453	+		DZA65_RS18575	0.46	-2.4
4,003,453	+		DZA65_RS18575	0.46	+0.6
4,003,454	-		DZA65_RS18575	0.46	+2.6
4,003,454	-		DZA65_RS18575	0.46	-0.4
4,003,454	-		DZA65_RS18575	0.46	+0.6
4,003,454	-		DZA65_RS18575	0.46	+0.4
4,003,457	+		DZA65_RS18575	0.46	-0.7
4,003,457	+		DZA65_RS18575	0.46	-1.3
4,003,457	+		DZA65_RS18575	0.46	+0.3
4,003,457	+		DZA65_RS18575	0.46	-1.4
4,003,457	+		DZA65_RS18575	0.46	-0.8
4,003,457	+		DZA65_RS18575	0.46	+0.6
4,003,457	+		DZA65_RS18575	0.46	+0.7
4,003,458	-		DZA65_RS18575	0.46	+0.1
4,003,458	-		DZA65_RS18575	0.46	-0.6
4,003,459	+		DZA65_RS18575	0.46	-0.7
4,003,459	+		DZA65_RS18575	0.46	-0.5
4,003,459	+		DZA65_RS18575	0.46	+0.6
4,003,459	+		DZA65_RS18575	0.46	-0.4
4,003,459	+		DZA65_RS18575	0.46	-0.1
4,003,459	+		DZA65_RS18575	0.46	-2.0
4,003,459	+		DZA65_RS18575	0.46	+1.0
4,003,459	+		DZA65_RS18575	0.46	-0.1
4,003,460	-		DZA65_RS18575	0.47	+0.0
4,003,460	-		DZA65_RS18575	0.47	-1.7
4,003,460	-		DZA65_RS18575	0.47	+0.3
4,003,460	-		DZA65_RS18575	0.47	+0.0
4,003,460	-		DZA65_RS18575	0.47	+0.9
4,003,460	-		DZA65_RS18575	0.47	+0.6
4,003,460	-		DZA65_RS18575	0.47	-1.0
4,003,460	-		DZA65_RS18575	0.47	-1.5
4,003,460	-		DZA65_RS18575	0.47	+2.3
4,003,460	-		DZA65_RS18575	0.47	+1.1
4,003,460	-		DZA65_RS18575	0.47	+1.6
4,003,460	-		DZA65_RS18575	0.47	+0.9
4,003,460	-		DZA65_RS18575	0.47	-2.4
4,003,486	+		DZA65_RS18575	0.50	-0.8
4,003,493	+		DZA65_RS18575	0.50	-0.4
4,003,493	+		DZA65_RS18575	0.50	+0.3
4,003,493	+		DZA65_RS18575	0.50	-1.9
4,003,493	+		DZA65_RS18575	0.50	+0.6
4,003,493	+		DZA65_RS18575	0.50	-0.4
4,003,493	+		DZA65_RS18575	0.50	-0.9
4,003,494	-		DZA65_RS18575	0.51	+1.2
4,003,494	-		DZA65_RS18575	0.51	+0.1
4,003,535	+		DZA65_RS18575	0.55	+0.6
4,003,536	-		DZA65_RS18575	0.56	+0.3
4,003,693	+		DZA65_RS18575	0.74	-1.4
4,003,694	-		DZA65_RS18575	0.74	+0.6
4,003,694	-		DZA65_RS18575	0.74	+0.3
4,003,715	+		DZA65_RS18575	0.77	-0.4
4,003,716	-		DZA65_RS18575	0.77	-1.3
4,003,744	+		DZA65_RS18575	0.80	-3.0
4,003,744	+		DZA65_RS18575	0.80	-0.8
4,003,745	-		DZA65_RS18575	0.80	+0.6
4,003,745	-		DZA65_RS18575	0.80	-0.1
4,003,745	-		DZA65_RS18575	0.80	+0.1
4,003,771	+		DZA65_RS18575	0.83	-0.6
4,003,771	+		DZA65_RS18575	0.83	+0.0
4,003,843	-				-0.5
4,003,843	-				-0.6
4,003,934	+				-0.1
4,003,934	+				-0.3
4,003,935	-				+0.1
4,003,935	-				-1.4
4,004,058	+		DZA65_RS18580	0.18	-2.7
4,004,058	+		DZA65_RS18580	0.18	-0.6
4,004,058	+		DZA65_RS18580	0.18	-0.4
4,004,058	+		DZA65_RS18580	0.18	-0.1
4,004,058	+		DZA65_RS18580	0.18	+2.5
4,004,058	+		DZA65_RS18580	0.18	+0.0
4,004,058	+		DZA65_RS18580	0.18	-0.0
4,004,058	+		DZA65_RS18580	0.18	-0.6
4,004,058	+		DZA65_RS18580	0.18	+0.5
4,004,058	+		DZA65_RS18580	0.18	+0.2
4,004,059	-		DZA65_RS18580	0.18	-1.0
4,004,059	-		DZA65_RS18580	0.18	-0.5
4,004,059	-		DZA65_RS18580	0.18	+0.8
4,004,059	-		DZA65_RS18580	0.18	-2.6
4,004,059	-		DZA65_RS18580	0.18	+1.5
4,004,059	-		DZA65_RS18580	0.18	+1.2
4,004,059	-		DZA65_RS18580	0.18	+1.1
4,004,132	+		DZA65_RS18580	0.27	-0.6
4,004,184	+		DZA65_RS18580	0.34	+0.1
4,004,197	+		DZA65_RS18580	0.35	+0.8
4,004,197	+		DZA65_RS18580	0.35	-0.2
4,004,197	+		DZA65_RS18580	0.35	-1.6
4,004,197	+		DZA65_RS18580	0.35	-0.6
4,004,198	-		DZA65_RS18580	0.35	+0.6
4,004,198	-		DZA65_RS18580	0.35	+1.5
4,004,198	-		DZA65_RS18580	0.35	+3.4
4,004,198	-		DZA65_RS18580	0.35	+0.3
4,004,198	-		DZA65_RS18580	0.35	+1.3
4,004,215	-		DZA65_RS18580	0.37	-0.1
4,004,355	+		DZA65_RS18580	0.54	-0.4
4,004,355	+		DZA65_RS18580	0.54	-0.9
4,004,355	+		DZA65_RS18580	0.54	+2.2
4,004,355	+		DZA65_RS18580	0.54	-0.4
4,004,355	+		DZA65_RS18580	0.54	+0.4
4,004,356	-		DZA65_RS18580	0.54	+0.9
4,004,396	-		DZA65_RS18580	0.59	+1.1
4,004,396	-		DZA65_RS18580	0.59	+0.6
4,004,433	+		DZA65_RS18580	0.64	+1.3
4,004,433	+		DZA65_RS18580	0.64	-0.1
4,004,433	+		DZA65_RS18580	0.64	+2.6
4,004,434	-		DZA65_RS18580	0.64	-0.4
4,004,434	-		DZA65_RS18580	0.64	-2.7
4,004,434	-		DZA65_RS18580	0.64	-0.2
4,004,434	-		DZA65_RS18580	0.64	+0.6
4,004,434	-		DZA65_RS18580	0.64	+0.7
4,004,434	-		DZA65_RS18580	0.64	-0.7
4,004,434	-		DZA65_RS18580	0.64	+0.6
4,004,454	+		DZA65_RS18580	0.66	-0.1
4,004,455	-		DZA65_RS18580	0.66	-0.4
4,004,493	+		DZA65_RS18580	0.71	+0.0
4,004,543	-		DZA65_RS18580	0.77	+0.1
4,004,545	+		DZA65_RS18580	0.77	+0.8
4,004,586	+		DZA65_RS18580	0.82	-0.7
4,004,586	+		DZA65_RS18580	0.82	-0.8
4,004,586	+		DZA65_RS18580	0.82	+0.1
4,004,586	+		DZA65_RS18580	0.82	+0.2
4,004,586	+		DZA65_RS18580	0.82	+1.3
4,004,586	+		DZA65_RS18580	0.82	+0.4
4,004,586	+		DZA65_RS18580	0.82	+0.4
4,004,586	+		DZA65_RS18580	0.82	+0.6
4,004,586	+		DZA65_RS18580	0.82	+0.9
4,004,586	+		DZA65_RS18580	0.82	+0.0
4,004,586	+		DZA65_RS18580	0.82	+0.7
4,004,586	+		DZA65_RS18580	0.82	-2.7
4,004,586	+		DZA65_RS18580	0.82	-0.6
4,004,586	+		DZA65_RS18580	0.82	-0.4
4,004,586	+		DZA65_RS18580	0.82	-1.0
4,004,587	-		DZA65_RS18580	0.82	-1.9
4,004,587	-		DZA65_RS18580	0.82	-1.2
4,004,587	-		DZA65_RS18580	0.82	+0.1
4,004,587	-		DZA65_RS18580	0.82	+0.1
4,004,587	-		DZA65_RS18580	0.82	-1.0
4,004,587	-		DZA65_RS18580	0.82	-0.4
4,004,587	-		DZA65_RS18580	0.82	-0.1
4,004,587	-		DZA65_RS18580	0.82	+1.6
4,004,587	-		DZA65_RS18580	0.82	-0.1
4,004,587	-		DZA65_RS18580	0.82	-0.1
4,004,587	-		DZA65_RS18580	0.82	+1.4
4,004,587	-		DZA65_RS18580	0.82	-0.4
4,004,854	+				+0.4
4,004,854	+				-1.0
4,004,854	+				+0.0
4,004,854	+				-0.1
4,004,854	+				+0.2
4,004,855	-				-0.0
4,004,855	-				+0.3
4,004,855	-				+0.7
4,004,855	-				+0.0
4,004,856	+				+0.0
4,004,857	-				+0.2
4,004,857	-				+1.2
4,004,857	-				+1.2