Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13840

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,969,286	+		DZA65_RS13835	0.17	+1.9
2,969,286	+		DZA65_RS13835	0.17	+0.8
2,969,290	-		DZA65_RS13835	0.17	+2.8
2,969,321	+		DZA65_RS13835	0.22	+0.8
2,969,321	+		DZA65_RS13835	0.22	-0.4
2,969,322	-		DZA65_RS13835	0.22	+0.3
2,969,378	+		DZA65_RS13835	0.29	-0.9
2,969,451	+		DZA65_RS13835	0.40	+0.9
2,969,467	+		DZA65_RS13835	0.42	+1.6
2,969,467	+		DZA65_RS13835	0.42	+0.2
2,969,468	-		DZA65_RS13835	0.42	+1.4
2,969,468	-		DZA65_RS13835	0.42	+1.7
2,969,468	-		DZA65_RS13835	0.42	-0.5
2,969,512	+		DZA65_RS13835	0.48	+0.6
2,969,513	-		DZA65_RS13835	0.48	+0.7
2,969,513	-		DZA65_RS13835	0.48	+1.3
2,969,513	-		DZA65_RS13835	0.48	-0.0
2,969,665	+		DZA65_RS13835	0.69	+0.2
2,969,665	+		DZA65_RS13835	0.69	+0.0
2,969,665	+		DZA65_RS13835	0.69	-0.0
2,969,666	-		DZA65_RS13835	0.69	+1.9
2,969,666	-		DZA65_RS13835	0.69	+0.9
2,969,666	-		DZA65_RS13835	0.69	-0.7
2,969,666	-		DZA65_RS13835	0.69	+0.7
2,969,666	-		DZA65_RS13835	0.69	-2.6
2,969,679	+		DZA65_RS13835	0.71	+0.8
2,969,679	+		DZA65_RS13835	0.71	+2.2
2,969,679	+		DZA65_RS13835	0.71	+0.8
2,969,679	+		DZA65_RS13835	0.71	+0.5
2,969,680	-		DZA65_RS13835	0.71	-0.8
2,969,680	-		DZA65_RS13835	0.71	-0.2
2,969,680	-		DZA65_RS13835	0.71	+0.7
2,969,680	-		DZA65_RS13835	0.71	+1.8
2,969,680	-		DZA65_RS13835	0.71	+0.9
2,969,712	+		DZA65_RS13835	0.76	+0.9
2,969,713	-		DZA65_RS13835	0.76	-0.3
2,969,796	-		DZA65_RS13835	0.87	+0.8
2,969,801	+		DZA65_RS13835	0.88	+0.5
2,969,802	-		DZA65_RS13835	0.88	-0.1
2,969,802	-		DZA65_RS13835	0.88	-0.1
2,969,802	-				-0.0
2,969,830	-				+0.2
2,969,830	-				+0.4
2,969,874	+				-0.2
2,969,874	+				+1.1
2,969,874	+				+0.5
2,969,875	-				+0.2
2,969,875	-				+0.7
2,969,875	-				+0.8
2,969,893	+				+0.8
2,969,893	+				+1.2
2,969,894	-				-0.4
2,969,894	-				+0.2
2,969,897	+				+2.5
2,969,897	+				-0.8
2,969,897	+				-0.8
2,969,897	+				+0.2
2,969,897	+				+0.3
2,969,897	+				+0.5
2,969,897	+				-0.6
2,969,897	+				-0.3
2,969,897	+				-0.1
2,969,898	-				-1.4
2,969,898	-				+0.2
2,969,902	-				-0.5
2,969,904	-				-0.0
2,969,909	+				+1.2
2,969,921	+				+1.4
2,969,927	+				-0.5
2,969,928	-				-0.1
2,969,935	+				+1.6
2,969,935	+				-1.1
2,969,936	-				-1.4
2,969,940	+				-2.6
2,969,940	+				-1.4
2,969,940	+				-0.9
2,969,940	+				+0.1
2,969,941	-				-1.1
2,969,941	-				+0.7
2,969,943	+				+1.8
2,969,943	+				+0.5
2,969,944	-				-0.1
2,969,944	-				+0.0
2,969,944	-				-0.2
2,969,960	+				+0.5
2,969,960	+				-0.2
2,969,961	-				-1.1
2,969,989	-				-0.8
2,970,015	-				-0.5
2,970,028	+				-0.6
2,970,033	+				+0.2
2,970,033	+				+1.2
2,970,034	-				-1.4
2,970,042	+				-0.8
2,970,059	+				-1.1
2,970,059	+				-0.0
2,970,059	+				-2.0
2,970,060	-				+0.8
2,970,078	+				+0.2
2,970,078	+				-0.2
2,970,078	+				+0.2
2,970,078	+				-1.1
2,970,079	-				-0.8
2,970,079	-				+0.2
2,970,079	-				-1.6
2,970,079	-				+1.5
2,970,079	-				+0.0
2,970,094	+				+1.2
2,970,107	+				-1.0
2,970,107	+				+0.2
2,970,108	-				+1.5
2,970,118	+				-1.8
2,970,122	-				+0.9
2,970,165	-				-1.0
2,970,165	-				+0.2
2,970,173	-				-0.3
2,970,173	-				+0.8
2,970,207	+				+0.7
2,970,208	-				+0.6
2,970,208	-				+0.5
2,970,221	-				-2.0
2,970,259	+				-0.7
2,970,281	+				-0.2
2,970,282	-				+0.1
2,970,285	+				-1.1
2,970,286	-				-1.2
2,970,326	+				-0.6
2,970,327	-				-0.5
2,970,433	-		DZA65_RS13840	0.11	-0.4
2,970,501	+		DZA65_RS13840	0.15	-1.1
2,970,526	-		DZA65_RS13840	0.17	+0.2
2,970,578	+		DZA65_RS13840	0.21	+0.2
2,970,579	-		DZA65_RS13840	0.21	-0.8
2,970,636	+		DZA65_RS13840	0.25	+1.8
2,970,708	+		DZA65_RS13840	0.30	-0.5
2,970,709	-		DZA65_RS13840	0.30	-0.8
2,970,730	-		DZA65_RS13840	0.32	+0.4
2,970,740	+		DZA65_RS13840	0.32	-0.0
2,970,741	-		DZA65_RS13840	0.32	+0.2
2,970,741	-		DZA65_RS13840	0.32	-2.6
2,970,780	+		DZA65_RS13840	0.35	+0.2
2,970,780	+		DZA65_RS13840	0.35	-0.0
2,970,790	+		DZA65_RS13840	0.36	-0.4
2,970,822	+		DZA65_RS13840	0.38	-0.8
2,970,886	-		DZA65_RS13840	0.42	+0.5
2,970,901	+		DZA65_RS13840	0.43	-1.8
2,970,902	-		DZA65_RS13840	0.44	+0.6
2,970,929	+		DZA65_RS13840	0.45	+0.3
2,970,930	-		DZA65_RS13840	0.46	+0.5
2,970,969	-		DZA65_RS13840	0.48	+0.9
2,970,973	-		DZA65_RS13840	0.49	+0.3
2,970,973	-		DZA65_RS13840	0.49	-1.2
2,971,023	+		DZA65_RS13840	0.52	+1.4
2,971,024	-		DZA65_RS13840	0.52	-0.7
2,971,028	-		DZA65_RS13840	0.52	-1.4
2,971,037	+		DZA65_RS13840	0.53	+1.1
2,971,089	+		DZA65_RS13840	0.57	+0.6
2,971,092	-		DZA65_RS13840	0.57	+0.2
2,971,103	+		DZA65_RS13840	0.58	-0.3
2,971,120	+		DZA65_RS13840	0.59	-0.6
2,971,120	+		DZA65_RS13840	0.59	+0.4
2,971,164	+		DZA65_RS13840	0.62	-1.4
2,971,165	-		DZA65_RS13840	0.62	+0.1
2,971,169	+		DZA65_RS13840	0.62	+0.4
2,971,170	-		DZA65_RS13840	0.62	-0.3
2,971,214	+		DZA65_RS13840	0.65	+0.8
2,971,382	-		DZA65_RS13840	0.77	-0.0
2,971,397	+		DZA65_RS13840	0.78	-1.2
2,971,397	+		DZA65_RS13840	0.78	-0.8
2,971,398	-		DZA65_RS13840	0.78	+0.2
2,971,416	+		DZA65_RS13840	0.80	+1.2
2,971,419	-		DZA65_RS13840	0.80	-0.2
2,971,431	+		DZA65_RS13840	0.81	-0.8
2,971,431	+		DZA65_RS13840	0.81	-1.0
2,971,432	-		DZA65_RS13840	0.81	-1.1
2,971,432	-		DZA65_RS13840	0.81	+0.8
2,971,432	-		DZA65_RS13840	0.81	-0.2
2,971,435	+		DZA65_RS13840	0.81	+0.0
2,971,435	+		DZA65_RS13840	0.81	+0.1
2,971,435	+		DZA65_RS13840	0.81	+0.1
2,971,435	+		DZA65_RS13840	0.81	-0.3
2,971,435	+		DZA65_RS13840	0.81	-1.1
2,971,435	+		DZA65_RS13840	0.81	-0.8
2,971,435	+		DZA65_RS13840	0.81	+0.6
2,971,436	-		DZA65_RS13840	0.81	-1.4
2,971,436	-		DZA65_RS13840	0.81	+0.0
2,971,473	+		DZA65_RS13840	0.84	+0.2
2,971,474	-		DZA65_RS13840	0.84	-2.2
2,971,474	-		DZA65_RS13840	0.84	+0.9
2,971,568	+				-0.8
2,971,568	+				+0.5
2,971,573	-				+0.5
2,971,584	+				+1.1
2,971,585	-				-0.2
2,971,643	-				-0.4
2,971,643	-				+0.0
2,971,643	-				+0.8
2,971,670	+				+1.0
2,971,671	-				+0.5
2,971,687	+				+0.8
2,971,687	+				+0.8
2,971,729	-				+0.7
2,971,729	-				+1.1
2,971,733	-				-0.4
2,971,758	+				+0.3
2,971,758	+				+0.8
2,971,759	-				+1.3
2,971,762	-				+1.2
2,971,789	+				-1.5
2,971,790	-				+0.8
2,971,809	+				-0.2
2,971,906	+				+0.7
2,971,907	-				+1.6
2,971,907	-				-0.4
2,971,907	-				-0.4
2,971,907	-				+0.9
2,971,907	-				+0.4
2,971,908	+				+0.5
2,971,909	-				+0.2
2,971,944	+		DZA65_RS13845	0.12	-0.1
2,971,981	+		DZA65_RS13845	0.16	-0.8
2,971,981	+		DZA65_RS13845	0.16	+0.2
2,972,038	+		DZA65_RS13845	0.21	+0.9
2,972,056	+		DZA65_RS13845	0.23	+0.4
2,972,056	+		DZA65_RS13845	0.23	+1.2
2,972,057	-		DZA65_RS13845	0.23	-0.0
2,972,057	-		DZA65_RS13845	0.23	-1.0
2,972,060	+		DZA65_RS13845	0.23	-0.6
2,972,060	+		DZA65_RS13845	0.23	+0.1
2,972,061	-		DZA65_RS13845	0.23	-0.3
2,972,061	-		DZA65_RS13845	0.23	+0.2
2,972,061	-		DZA65_RS13845	0.23	+0.4
2,972,110	+		DZA65_RS13845	0.28	+0.2
2,972,152	+		DZA65_RS13845	0.31	+0.4
2,972,181	+		DZA65_RS13845	0.34	+0.3
2,972,181	+		DZA65_RS13845	0.34	+1.3
2,972,185	+		DZA65_RS13845	0.34	-1.7
2,972,186	-		DZA65_RS13845	0.35	+0.8
2,972,186	-		DZA65_RS13845	0.35	+0.2
2,972,186	-		DZA65_RS13845	0.35	-0.6
2,972,206	+		DZA65_RS13845	0.36	+0.7
2,972,206	+		DZA65_RS13845	0.36	+0.1
2,972,266	-		DZA65_RS13845	0.42	+0.0
2,972,299	+		DZA65_RS13845	0.45	-1.8
2,972,367	+		DZA65_RS13845	0.51	-1.0
2,972,367	+		DZA65_RS13845	0.51	+2.8
2,972,395	+		DZA65_RS13845	0.54	+0.1
2,972,395	+		DZA65_RS13845	0.54	+0.5
2,972,396	-		DZA65_RS13845	0.54	-2.4
2,972,514	+		DZA65_RS13845	0.65	-2.1
2,972,514	+		DZA65_RS13845	0.65	+0.8
2,972,515	-		DZA65_RS13845	0.65	-2.8
2,972,586	+				-1.4
2,972,586	+		DZA65_RS13845	0.71	+0.8