Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13400

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
2,871,020	-				-0.6
2,871,062	-				-1.4
2,871,062	-				-2.6
2,871,075	+				-0.8
2,871,075	+				-2.4
2,871,075	+				-2.9
2,871,075	+				-1.8
2,871,075	+				-2.4
2,871,075	+				-2.8
2,871,075	+				-0.3
2,871,075	+				-2.8
2,871,075	+				-1.4
2,871,075	+				-1.0
2,871,076	-				-1.8
2,871,076	-				-3.8
2,871,076	-				-1.3
2,871,076	-				-3.8
2,871,076	-				-3.5
2,871,076	-				-2.4
2,871,076	-				-4.2
2,871,076	-				-0.8
2,871,076	-				-3.2
2,871,076	-				-0.8
2,871,116	+				-0.2
2,871,116	+				+0.4
2,871,116	+				+0.3
2,871,117	-				-2.0
2,871,117	-				-0.5
2,871,120	-				+0.5
2,871,193	+				+0.9
2,871,217	-				-0.6
2,871,245	+				-0.8
2,871,245	+				+0.2
2,871,245	+				+0.3
2,871,246	-				+0.8
2,871,246	-				-0.3
2,871,246	-				+0.2
2,871,337	-				-0.2
2,871,378	+				-1.7
2,871,378	+				+0.4
2,871,378	+				-1.7
2,871,379	-				+0.4
2,871,379	-				-1.4
2,871,387	+				+0.6
2,871,387	+				-0.1
2,871,387	+				-0.7
2,871,387	+				-0.3
2,871,388	-				-1.4
2,871,388	-				+0.2
2,871,389	+				+0.3
2,871,389	+				-0.8
2,871,389	+				-0.0
2,871,389	+				-0.0
2,871,389	+				-1.8
2,871,389	+				+0.7
2,871,389	+				+1.8
2,871,389	+				+0.8
2,871,389	+				-0.6
2,871,389	+				-0.1
2,871,389	+				-0.6
2,871,389	+				-0.2
2,871,389	+				-0.4
2,871,389	+				-1.2
2,871,389	+				-0.9
2,871,390	-				-0.2
2,871,390	-				-0.6
2,871,390	-				-2.2
2,871,390	-				-1.4
2,871,390	-				+1.0
2,871,390	-				+0.8
2,871,390	-				-0.0
2,871,390	-				+2.0
2,871,390	-				+0.4
2,871,391	+				-0.5
2,871,391	+				+0.2
2,871,391	+				-1.2
2,871,391	+				+1.2
2,871,391	+				-0.4
2,871,391	+				-1.2
2,871,391	+				-0.8
2,871,391	+				+0.8
2,871,392	-				-1.2
2,871,392	-				-0.8
2,871,392	-				+0.6
2,871,392	-				-0.4
2,871,392	-				-0.8
2,871,392	-				+0.1
2,871,392	-				+1.6
2,871,392	-				+0.2
2,871,392	-				+0.3
2,871,392	-				+0.2
2,871,392	-				+0.6
2,871,392	-				-0.1
2,871,392	-				-1.0
2,871,392	-				+0.2
2,871,392	-				+0.2
2,871,392	-				-0.2
2,871,392	-				+0.8
2,871,392	-				+0.6
2,871,392	-				+1.4
2,871,411	+				+1.2
2,871,411	+				-0.2
2,871,412	-				+1.8
2,871,414	-				+0.5
2,871,458	+				+0.6
2,871,458	+				+3.0
2,871,458	+				-1.3
2,871,459	-		DZA65_RS13395	0.10	+0.2
2,871,632	-		DZA65_RS13395	0.41	-2.2
2,871,758	-		DZA65_RS13395	0.64	+1.0
2,871,766	-		DZA65_RS13395	0.65	+0.6
2,871,833	+		DZA65_RS13395	0.77	-1.2
2,871,833	+		DZA65_RS13395	0.77	+0.2
2,871,833	+		DZA65_RS13395	0.77	-1.1
2,871,834	-		DZA65_RS13395	0.78	+0.8
2,871,834	-		DZA65_RS13395	0.78	+0.2
2,871,834	-		DZA65_RS13395	0.78	+0.9
2,871,841	+		DZA65_RS13395	0.79	-1.4
2,871,841	+		DZA65_RS13395	0.79	-0.1
2,871,841	+		DZA65_RS13395	0.79	-0.7
2,871,842	-		DZA65_RS13395	0.79	-1.0
2,871,850	-		DZA65_RS13395	0.81	-0.2
2,871,850	-		DZA65_RS13395	0.81	-1.4
2,871,900	+		DZA65_RS13395	0.90	-1.0
2,871,900	+		DZA65_RS13395	0.90	-2.2
2,871,901	-		DZA65_RS13395	0.90	-0.2
2,871,901	-		DZA65_RS13395	0.90	+2.5
2,871,901	-		DZA65_RS13395	0.90	+0.8
2,871,968	+				+0.5
2,871,968	+				-0.8
2,871,968	+				-0.4
2,871,969	-				+1.5
2,871,969	-				+1.2
2,871,970	+				+0.2
2,871,970	+				-0.4
2,871,971	-				-0.2
2,871,972	+				+1.3
2,871,972	+				-2.8
2,871,972	+				+0.2
2,871,973	-				-1.2
2,871,973	-				-1.1
2,871,973	-				+0.5
2,871,973	-				-2.4
2,871,987	+				-0.6
2,871,987	+				-0.4
2,871,987	+				+0.0
2,871,987	+				+0.5
2,871,987	+				+0.4
2,871,987	+				+0.5
2,871,987	+				+3.5
2,871,987	+				-0.8
2,871,987	+				-1.4
2,871,987	+				+0.2
2,871,987	+				-1.4
2,871,987	+				-1.2
2,871,987	+				-2.6
2,871,987	+				-0.2
2,871,988	-				+0.2
2,871,988	-				+0.6
2,871,988	-				-0.4
2,871,988	-				+1.2
2,871,988	-				-0.3
2,871,988	-				-1.0
2,871,988	-				+1.4
2,871,988	-				-1.4
2,871,988	-				+0.8
2,871,988	-				-0.5
2,871,988	-				-0.1
2,872,002	+				+0.5
2,872,022	+				-0.0
2,872,022	+				+0.2
2,872,022	+				-0.7
2,872,022	+				-0.4
2,872,023	-				+0.6
2,872,023	-				-0.5
2,872,023	-				+1.4
2,872,023	-				+0.7
2,872,023	-				-0.5
2,872,023	-				-0.2
2,872,023	-				-0.0
2,872,023	-				-0.6
2,872,023	-				-0.6
2,872,023	-				-0.3
2,872,297	+		DZA65_RS13400	0.32	-2.4
2,872,297	+		DZA65_RS13400	0.32	-0.8
2,872,297	+		DZA65_RS13400	0.32	+0.8
2,872,297	+		DZA65_RS13400	0.32	+0.8
2,872,297	+		DZA65_RS13400	0.32	+0.8
2,872,297	+		DZA65_RS13400	0.32	-0.6
2,872,297	+		DZA65_RS13400	0.32	-0.5
2,872,298	-		DZA65_RS13400	0.32	-0.6
2,872,298	-		DZA65_RS13400	0.32	+0.2
2,872,298	-		DZA65_RS13400	0.32	-2.6
2,872,298	-		DZA65_RS13400	0.32	+1.0
2,872,298	-		DZA65_RS13400	0.32	-1.0
2,872,298	-		DZA65_RS13400	0.32	-0.1
2,872,300	-		DZA65_RS13400	0.33	-1.4
2,872,323	+		DZA65_RS13400	0.35	+1.9
2,872,323	+		DZA65_RS13400	0.35	+0.8
2,872,323	+		DZA65_RS13400	0.35	+1.6
2,872,484	-		DZA65_RS13400	0.52	+0.4
2,872,542	+		DZA65_RS13400	0.58	+1.2
2,872,542	+		DZA65_RS13400	0.58	-0.4
2,872,543	-		DZA65_RS13400	0.58	-0.4
2,872,543	-		DZA65_RS13400	0.58	-0.2
2,872,543	-		DZA65_RS13400	0.58	-2.2
2,872,555	+		DZA65_RS13400	0.59	+1.5
2,872,556	-		DZA65_RS13400	0.59	+1.3
2,872,558	+		DZA65_RS13400	0.59	-2.6
2,872,559	-		DZA65_RS13400	0.59	-0.4
2,872,633	+		DZA65_RS13400	0.67	+0.8
2,872,634	-		DZA65_RS13400	0.67	+0.2
2,872,634	-		DZA65_RS13400	0.67	+1.0
2,872,647	+		DZA65_RS13400	0.69	-0.3
2,872,647	+		DZA65_RS13400	0.69	+0.7
2,872,647	+		DZA65_RS13400	0.69	-0.2
2,872,647	+		DZA65_RS13400	0.69	-1.2
2,872,648	-		DZA65_RS13400	0.69	-0.6
2,872,648	-		DZA65_RS13400	0.69	+0.2
2,872,648	-		DZA65_RS13400	0.69	+1.1
2,872,651	+		DZA65_RS13400	0.69	-0.2
2,872,651	+		DZA65_RS13400	0.69	-1.3
2,872,651	+		DZA65_RS13400	0.69	-1.4
2,872,651	+		DZA65_RS13400	0.69	-0.8
2,872,651	+		DZA65_RS13400	0.69	-0.3
2,872,651	+		DZA65_RS13400	0.69	+1.2
2,872,651	+		DZA65_RS13400	0.69	+0.3
2,872,651	+		DZA65_RS13400	0.69	+0.7
2,872,651	+		DZA65_RS13400	0.69	-0.2
2,872,651	+		DZA65_RS13400	0.69	+0.7
2,872,652	-		DZA65_RS13400	0.69	+0.5
2,872,652	-		DZA65_RS13400	0.69	+0.8
2,872,652	-		DZA65_RS13400	0.69	+1.6
2,872,652	-		DZA65_RS13400	0.69	-0.5
2,872,652	-		DZA65_RS13400	0.69	-0.9
2,872,652	-		DZA65_RS13400	0.69	-1.1
2,872,652	-		DZA65_RS13400	0.69	-2.4
2,872,652	-		DZA65_RS13400	0.69	-0.1
2,872,652	-		DZA65_RS13400	0.69	-0.4
2,872,663	+		DZA65_RS13400	0.70	-0.8
2,872,792	+		DZA65_RS13400	0.84	+1.3
2,872,792	+		DZA65_RS13400	0.84	+0.7
2,872,793	-		DZA65_RS13400	0.84	-2.6
2,872,945	+				+0.9
2,872,945	+				+0.9
2,872,945	+				-0.3
2,872,945	+				-1.0
2,872,946	-				-0.2
2,872,946	-				-1.3
2,872,946	-				-0.8
2,872,946	-				+0.8
2,872,946	-				-0.6
2,872,989	-				+0.4
2,873,025	+				+0.5
2,873,025	+				-1.2
2,873,025	+				-0.2
2,873,025	+				+0.2
2,873,025	+				+1.5
2,873,026	-				+0.3
2,873,026	-				+0.6
2,873,061	+				-1.4
2,873,061	+				+0.1
2,873,062	-				+0.0
2,873,062	-				-2.8
2,873,081	-				-0.4
2,873,232	-		DZA65_RS13405	0.22	+0.2
2,873,338	+		DZA65_RS13405	0.31	-2.4
2,873,339	-		DZA65_RS13405	0.32	-0.6
2,873,339	-		DZA65_RS13405	0.32	+0.2
2,873,339	-		DZA65_RS13405	0.32	-0.0
2,873,362	-		DZA65_RS13405	0.34	+0.7
2,873,425	-		DZA65_RS13405	0.39	-0.2
2,873,438	+		DZA65_RS13405	0.40	+0.1
2,873,438	+		DZA65_RS13405	0.40	-1.7
2,873,439	-		DZA65_RS13405	0.40	-0.1
2,873,439	-		DZA65_RS13405	0.40	-0.5
2,873,439	-		DZA65_RS13405	0.40	-0.6
2,873,463	+		DZA65_RS13405	0.42	+2.0
2,873,463	+		DZA65_RS13405	0.42	-0.1
2,873,464	-		DZA65_RS13405	0.42	-2.6
2,873,464	-		DZA65_RS13405	0.42	-1.2
2,873,466	+		DZA65_RS13405	0.43	-1.1
2,873,499	+		DZA65_RS13405	0.45	-0.4
2,873,548	+		DZA65_RS13405	0.50	-1.3
2,873,548	+		DZA65_RS13405	0.50	+0.8
2,873,549	-		DZA65_RS13405	0.50	-3.3
2,873,556	+		DZA65_RS13405	0.50	+0.0
2,873,557	-		DZA65_RS13405	0.50	-1.4
2,873,557	-				-2.6
2,873,641	+		DZA65_RS13405	0.58	+1.8
2,873,641	+		DZA65_RS13405	0.58	-1.1
2,873,641	+		DZA65_RS13405	0.58	-0.2
2,873,641	+		DZA65_RS13405	0.58	-1.4
2,873,642	-		DZA65_RS13405	0.58	+0.2
2,873,642	-		DZA65_RS13405	0.58	+0.3
2,873,932	-		DZA65_RS13405	0.83	-0.7
2,873,932	-		DZA65_RS13405	0.83	+0.2