Experiment: M9+starch
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19575 and DZA65_RS19580 are separated by 67 nucleotides DZA65_RS19580 and DZA65_RS19585 are separated by 323 nucleotides
DZA65_RS19575: DZA65_RS19575 - phosphoglycerate kinase, at 4,238,468 to 4,239,631
_RS19575
DZA65_RS19580: DZA65_RS19580 - erythrose-4-phosphate dehydrogenase, at 4,239,699 to 4,240,715
_RS19580
DZA65_RS19585: DZA65_RS19585 - transketolase, at 4,241,039 to 4,243,033
_RS19585
Position (kb) 4239
4240
4241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4239.055 kb on + strand, within DZA65_RS19575 at 4239.658 kb on - strand at 4239.732 kb on - strand at 4239.732 kb on - strand at 4239.732 kb on - strand at 4239.732 kb on - strand at 4239.837 kb on - strand, within DZA65_RS19580 at 4239.883 kb on + strand, within DZA65_RS19580 at 4239.883 kb on + strand, within DZA65_RS19580 at 4239.883 kb on + strand, within DZA65_RS19580 at 4239.883 kb on + strand, within DZA65_RS19580 at 4239.883 kb on + strand, within DZA65_RS19580 at 4239.883 kb on + strand, within DZA65_RS19580 at 4239.884 kb on - strand, within DZA65_RS19580 at 4239.884 kb on - strand, within DZA65_RS19580 at 4239.884 kb on - strand, within DZA65_RS19580 at 4239.884 kb on - strand, within DZA65_RS19580 at 4239.884 kb on - strand, within DZA65_RS19580 at 4239.891 kb on + strand, within DZA65_RS19580 at 4239.892 kb on - strand, within DZA65_RS19580 at 4239.892 kb on - strand, within DZA65_RS19580 at 4239.892 kb on - strand, within DZA65_RS19580 at 4239.892 kb on - strand, within DZA65_RS19580 at 4239.893 kb on + strand, within DZA65_RS19580 at 4239.893 kb on + strand, within DZA65_RS19580 at 4239.894 kb on - strand, within DZA65_RS19580 at 4239.894 kb on - strand, within DZA65_RS19580 at 4239.905 kb on + strand, within DZA65_RS19580 at 4239.905 kb on + strand, within DZA65_RS19580 at 4239.946 kb on - strand, within DZA65_RS19580 at 4239.995 kb on + strand, within DZA65_RS19580 at 4239.995 kb on + strand, within DZA65_RS19580 at 4239.996 kb on - strand, within DZA65_RS19580 at 4240.062 kb on - strand, within DZA65_RS19580 at 4240.062 kb on - strand, within DZA65_RS19580 at 4240.121 kb on + strand, within DZA65_RS19580 at 4240.121 kb on + strand, within DZA65_RS19580 at 4240.121 kb on + strand, within DZA65_RS19580 at 4240.122 kb on - strand, within DZA65_RS19580 at 4240.135 kb on + strand, within DZA65_RS19580 at 4240.136 kb on - strand, within DZA65_RS19580 at 4240.205 kb on - strand, within DZA65_RS19580 at 4240.227 kb on - strand, within DZA65_RS19580 at 4240.235 kb on + strand, within DZA65_RS19580 at 4240.235 kb on + strand, within DZA65_RS19580 at 4240.408 kb on + strand, within DZA65_RS19580 at 4240.408 kb on + strand, within DZA65_RS19580 at 4240.409 kb on - strand, within DZA65_RS19580 at 4240.409 kb on - strand, within DZA65_RS19580 at 4240.409 kb on - strand, within DZA65_RS19580 at 4240.410 kb on + strand, within DZA65_RS19580 at 4240.410 kb on + strand, within DZA65_RS19580 at 4240.410 kb on + strand, within DZA65_RS19580 at 4240.410 kb on + strand, within DZA65_RS19580 at 4240.411 kb on - strand, within DZA65_RS19580 at 4240.411 kb on - strand, within DZA65_RS19580 at 4240.411 kb on - strand, within DZA65_RS19580 at 4240.494 kb on - strand, within DZA65_RS19580 at 4240.507 kb on - strand, within DZA65_RS19580 at 4240.567 kb on + strand, within DZA65_RS19580 at 4240.568 kb on - strand, within DZA65_RS19580 at 4240.568 kb on - strand, within DZA65_RS19580 at 4240.568 kb on - strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.571 kb on + strand, within DZA65_RS19580 at 4240.572 kb on - strand, within DZA65_RS19580 at 4240.572 kb on - strand, within DZA65_RS19580 at 4240.572 kb on - strand at 4240.572 kb on - strand, within DZA65_RS19580 at 4240.651 kb on + strand at 4240.651 kb on + strand at 4240.652 kb on - strand at 4240.652 kb on - strand at 4240.666 kb on - strand at 4240.671 kb on - strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.677 kb on + strand at 4240.678 kb on - strand at 4240.678 kb on - strand at 4240.678 kb on - strand at 4240.729 kb on + strand at 4240.729 kb on + strand at 4240.730 kb on - strand at 4240.730 kb on - strand at 4240.736 kb on - strand at 4240.751 kb on + strand at 4240.752 kb on - strand at 4240.757 kb on - strand at 4240.763 kb on + strand at 4240.763 kb on + strand at 4240.763 kb on + strand at 4240.763 kb on + strand at 4240.764 kb on - strand at 4240.764 kb on - strand at 4240.778 kb on - strand at 4240.778 kb on - strand at 4240.828 kb on + strand at 4240.828 kb on + strand at 4240.947 kb on + strand at 4241.023 kb on + strand at 4241.024 kb on - strand at 4241.040 kb on + strand at 4241.041 kb on - strand at 4241.041 kb on - strand at 4241.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+starch remove 4,239,055 + DZA65_RS19575 0.50 +2.8 4,239,658 - -0.9 4,239,732 - -2.0 4,239,732 - -1.1 4,239,732 - +1.5 4,239,732 - -1.9 4,239,837 - DZA65_RS19580 0.14 -0.8 4,239,883 + DZA65_RS19580 0.18 +0.2 4,239,883 + DZA65_RS19580 0.18 -0.3 4,239,883 + DZA65_RS19580 0.18 -1.9 4,239,883 + DZA65_RS19580 0.18 +0.7 4,239,883 + DZA65_RS19580 0.18 -1.1 4,239,883 + DZA65_RS19580 0.18 -1.1 4,239,884 - DZA65_RS19580 0.18 +0.1 4,239,884 - DZA65_RS19580 0.18 -0.6 4,239,884 - DZA65_RS19580 0.18 -1.3 4,239,884 - DZA65_RS19580 0.18 +0.3 4,239,884 - DZA65_RS19580 0.18 +1.0 4,239,891 + DZA65_RS19580 0.19 -2.3 4,239,892 - DZA65_RS19580 0.19 +0.7 4,239,892 - DZA65_RS19580 0.19 +1.0 4,239,892 - DZA65_RS19580 0.19 -0.5 4,239,892 - DZA65_RS19580 0.19 +3.0 4,239,893 + DZA65_RS19580 0.19 +0.2 4,239,893 + DZA65_RS19580 0.19 -0.0 4,239,894 - DZA65_RS19580 0.19 -0.9 4,239,894 - DZA65_RS19580 0.19 +0.4 4,239,905 + DZA65_RS19580 0.20 -2.8 4,239,905 + DZA65_RS19580 0.20 +0.2 4,239,946 - DZA65_RS19580 0.24 -0.2 4,239,995 + DZA65_RS19580 0.29 -2.5 4,239,995 + DZA65_RS19580 0.29 +0.5 4,239,996 - DZA65_RS19580 0.29 -0.2 4,240,062 - DZA65_RS19580 0.36 -0.1 4,240,062 - DZA65_RS19580 0.36 +0.2 4,240,121 + DZA65_RS19580 0.41 -0.7 4,240,121 + DZA65_RS19580 0.41 +0.8 4,240,121 + DZA65_RS19580 0.41 +0.1 4,240,122 - DZA65_RS19580 0.42 +1.2 4,240,135 + DZA65_RS19580 0.43 -1.3 4,240,136 - DZA65_RS19580 0.43 +0.9 4,240,205 - DZA65_RS19580 0.50 +0.7 4,240,227 - DZA65_RS19580 0.52 +3.2 4,240,235 + DZA65_RS19580 0.53 -0.9 4,240,235 + DZA65_RS19580 0.53 +0.2 4,240,408 + DZA65_RS19580 0.70 +1.1 4,240,408 + DZA65_RS19580 0.70 -0.8 4,240,409 - DZA65_RS19580 0.70 -0.2 4,240,409 - DZA65_RS19580 0.70 +0.5 4,240,409 - DZA65_RS19580 0.70 +1.2 4,240,410 + DZA65_RS19580 0.70 -1.3 4,240,410 + DZA65_RS19580 0.70 +1.1 4,240,410 + DZA65_RS19580 0.70 +0.4 4,240,410 + DZA65_RS19580 0.70 +0.1 4,240,411 - DZA65_RS19580 0.70 -0.9 4,240,411 - DZA65_RS19580 0.70 +0.6 4,240,411 - DZA65_RS19580 0.70 +0.3 4,240,494 - DZA65_RS19580 0.78 -1.2 4,240,507 - DZA65_RS19580 0.79 -0.8 4,240,567 + DZA65_RS19580 0.85 +1.0 4,240,568 - DZA65_RS19580 0.85 +0.7 4,240,568 - DZA65_RS19580 0.85 +0.8 4,240,568 - DZA65_RS19580 0.85 -0.8 4,240,571 + DZA65_RS19580 0.86 +0.2 4,240,571 + DZA65_RS19580 0.86 +0.6 4,240,571 + DZA65_RS19580 0.86 +0.7 4,240,571 + DZA65_RS19580 0.86 -0.2 4,240,571 + DZA65_RS19580 0.86 +0.9 4,240,571 + DZA65_RS19580 0.86 +0.7 4,240,571 + DZA65_RS19580 0.86 +0.0 4,240,571 + DZA65_RS19580 0.86 +0.0 4,240,571 + DZA65_RS19580 0.86 +0.5 4,240,572 - DZA65_RS19580 0.86 -0.1 4,240,572 - DZA65_RS19580 0.86 -0.3 4,240,572 - -1.7 4,240,572 - DZA65_RS19580 0.86 -0.6 4,240,651 + +0.2 4,240,651 + -0.6 4,240,652 - +0.1 4,240,652 - +0.6 4,240,666 - +0.7 4,240,671 - -0.3 4,240,677 + -0.3 4,240,677 + -0.8 4,240,677 + +0.9 4,240,677 + -0.7 4,240,677 + -0.6 4,240,677 + -1.5 4,240,677 + -1.8 4,240,677 + -0.6 4,240,677 + -2.3 4,240,678 - +1.8 4,240,678 - -0.1 4,240,678 - -0.1 4,240,729 + -1.9 4,240,729 + +1.2 4,240,730 - -1.2 4,240,730 - +0.1 4,240,736 - -2.1 4,240,751 + +1.2 4,240,752 - -0.5 4,240,757 - +0.7 4,240,763 + +1.1 4,240,763 + -0.9 4,240,763 + +0.7 4,240,763 + -0.1 4,240,764 - -0.1 4,240,764 - +0.9 4,240,778 - +0.7 4,240,778 - -0.2 4,240,828 + +1.3 4,240,828 + -0.2 4,240,947 + -0.7 4,241,023 + -0.2 4,241,024 - -0.5 4,241,040 + -2.1 4,241,041 - -0.9 4,241,041 - -2.1 4,241,041 - +0.1
Or see this region's nucleotide sequence