Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18065

Experiment: M9+starch

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+starch
3,883,946	+		DZA65_RS18055	0.31	+0.7
3,883,957	-		DZA65_RS18055	0.34	+0.9
3,883,996	+		DZA65_RS18055	0.45	-1.0
3,883,996	+		DZA65_RS18055	0.45	-0.0
3,883,996	+		DZA65_RS18055	0.45	+0.2
3,883,997	-		DZA65_RS18055	0.45	+0.3
3,883,997	-		DZA65_RS18055	0.45	-0.7
3,883,997	-		DZA65_RS18055	0.45	+0.1
3,883,997	-		DZA65_RS18055	0.45	-0.1
3,884,029	+		DZA65_RS18055	0.55	-0.4
3,884,030	-		DZA65_RS18055	0.55	+0.3
3,884,030	-		DZA65_RS18055	0.55	-2.5
3,884,030	-		DZA65_RS18055	0.55	-1.7
3,884,030	-		DZA65_RS18055	0.55	+0.4
3,884,062	+		DZA65_RS18055	0.64	+0.7
3,884,063	-		DZA65_RS18055	0.64	-0.1
3,884,063	-		DZA65_RS18055	0.64	-1.9
3,884,128	+		DZA65_RS18055	0.82	-0.8
3,884,129	-		DZA65_RS18055	0.83	-1.0
3,884,129	-		DZA65_RS18055	0.83	-0.3
3,884,144	-		DZA65_RS18055	0.87	+0.8
3,884,144	-				-1.6
3,884,156	+				+0.5
3,884,156	+				+0.8
3,884,157	-				-0.3
3,884,162	+				+0.4
3,884,163	-				-2.2
3,884,169	+				-0.7
3,884,170	-				+0.8
3,884,205	-				-1.2
3,884,205	-				-1.5
3,884,205	-				-0.5
3,884,280	+				+0.5
3,884,280	+				+0.3
3,884,280	+				+0.4
3,884,280	+				-0.3
3,884,281	-				+0.5
3,884,281	-				-1.7
3,884,281	-				+0.1
3,884,281	-				-0.5
3,884,312	+				-0.0
3,884,312	+				+1.3
3,884,312	+				-0.2
3,884,313	-				+2.3
3,884,313	-				+0.1
3,884,313	-				+0.2
3,884,313	-				-1.8
3,884,313	-				-0.3
3,884,320	-				+2.3
3,884,320	-				+2.0
3,884,320	-				-0.3
3,884,337	+				+0.2
3,884,337	+				-2.3
3,884,337	+				-1.0
3,884,338	-				-1.2
3,884,338	-				-1.3
3,884,338	-				-0.6
3,884,338	-				-1.5
3,884,338	-				-0.8
3,884,341	+				-1.8
3,884,341	+				-1.9
3,884,341	+				-2.6
3,884,341	+				+0.2
3,884,341	+				-1.2
3,884,344	+				-1.0
3,884,345	-				-0.3
3,884,414	+		DZA65_RS18060	0.17	-2.5
3,884,415	-		DZA65_RS18060	0.17	+0.5
3,884,415	-		DZA65_RS18060	0.17	-1.5
3,884,470	+		DZA65_RS18060	0.25	-1.2
3,884,470	+		DZA65_RS18060	0.25	-1.2
3,884,471	-		DZA65_RS18060	0.26	+0.0
3,884,590	-		DZA65_RS18060	0.45	+0.5
3,884,602	+		DZA65_RS18060	0.47	-0.8
3,884,603	-		DZA65_RS18060	0.47	+1.1
3,884,603	-		DZA65_RS18060	0.47	-0.0
3,884,732	+		DZA65_RS18060	0.67	-2.0
3,884,732	+		DZA65_RS18060	0.67	-1.8
3,884,732	+		DZA65_RS18060	0.67	+0.2
3,884,732	+		DZA65_RS18060	0.67	-3.0
3,884,733	-		DZA65_RS18060	0.68	-0.5
3,884,733	-		DZA65_RS18060	0.68	+0.7
3,884,733	-		DZA65_RS18060	0.68	-2.3
3,884,733	-		DZA65_RS18060	0.68	-1.5
3,884,733	-		DZA65_RS18060	0.68	-2.6
3,884,733	-		DZA65_RS18060	0.68	-1.9
3,884,733	-		DZA65_RS18060	0.68	-1.0
3,884,733	-		DZA65_RS18060	0.68	-1.0
3,884,887	+				-0.3
3,884,887	+				+0.3
3,884,887	+				-0.7
3,884,887	+				+0.5
3,884,887	+				-1.0
3,884,887	+				+0.4
3,884,887	+				-1.0
3,884,887	+				-0.7
3,884,888	-				-2.0
3,884,888	-				+0.1
3,884,888	-				-1.5
3,884,888	-				+0.7
3,884,888	-				-1.0
3,884,888	-				-0.7
3,884,888	-				-1.0
3,884,888	-				-1.0
3,884,888	-				+0.4
3,884,888	-				+0.3
3,884,888	-				+0.5
3,884,888	-				+1.0
3,884,937	+				-0.0
3,884,938	-				-0.5
3,885,022	-				+0.5
3,885,139	-		DZA65_RS18065	0.14	-0.9
3,885,139	-		DZA65_RS18065	0.14	-0.8
3,885,139	-		DZA65_RS18065	0.14	-2.3
3,885,247	-		DZA65_RS18065	0.22	-3.2
3,885,247	-		DZA65_RS18065	0.22	-0.5
3,885,254	-		DZA65_RS18065	0.22	+2.3
3,885,254	-		DZA65_RS18065	0.22	+0.1
3,885,280	+				-2.0
3,885,300	+		DZA65_RS18065	0.25	+0.1
3,885,300	+				-0.5
3,885,301	-		DZA65_RS18065	0.26	-0.5
3,885,301	-		DZA65_RS18065	0.26	-1.5
3,885,301	-		DZA65_RS18065	0.26	-1.3
3,885,301	-		DZA65_RS18065	0.26	-1.0
3,885,609	+		DZA65_RS18065	0.47	-1.5
3,885,609	+		DZA65_RS18065	0.47	-1.1
3,885,609	+		DZA65_RS18065	0.47	-0.6
3,885,610	-		DZA65_RS18065	0.47	-1.6
3,885,610	-		DZA65_RS18065	0.47	-1.6
3,885,610	-		DZA65_RS18065	0.47	-1.0
3,885,610	-		DZA65_RS18065	0.47	-0.5
3,885,610	-		DZA65_RS18065	0.47	+1.4
3,885,696	+		DZA65_RS18065	0.53	+1.1
3,885,697	-		DZA65_RS18065	0.53	-0.8
3,885,697	-		DZA65_RS18065	0.53	-0.2
3,885,804	+		DZA65_RS18065	0.61	-1.5
3,885,804	+		DZA65_RS18065	0.61	-0.5
3,885,805	-		DZA65_RS18065	0.61	-0.6
3,885,898	+		DZA65_RS18065	0.67	+0.5
3,885,905	-		DZA65_RS18065	0.68	-1.0
3,886,005	+		DZA65_RS18065	0.75	-1.6
3,886,005	+		DZA65_RS18065	0.75	-1.9
3,886,005	+		DZA65_RS18065	0.75	-0.8
3,886,005	+		DZA65_RS18065	0.75	-1.6
3,886,006	-		DZA65_RS18065	0.75	-1.3
3,886,006	-		DZA65_RS18065	0.75	-0.8
3,886,006	-		DZA65_RS18065	0.75	+2.1
3,886,006	-		DZA65_RS18065	0.75	-1.8
3,886,006	-		DZA65_RS18065	0.75	-0.2
3,886,006	-		DZA65_RS18065	0.75	-0.3
3,886,174	+		DZA65_RS18065	0.87	-2.9
3,886,174	+		DZA65_RS18065	0.87	+0.1
3,886,183	+		DZA65_RS18065	0.87	-0.2
3,886,183	+		DZA65_RS18065	0.87	-1.6
3,886,183	+		DZA65_RS18065	0.87	+0.0
3,886,184	-		DZA65_RS18065	0.87	-2.5
3,886,201	-		DZA65_RS18065	0.89	+0.5
3,886,201	-		DZA65_RS18065	0.89	+0.1
3,886,247	-				-0.0
3,886,311	+				-1.2
3,886,311	+				+1.1
3,886,311	+				-2.9
3,886,351	+				-1.6
3,886,351	+				+0.3
3,886,351	+				+0.5
3,886,354	+				-0.6
3,886,354	+				-0.9
3,886,355	-				-0.8
3,886,355	-				+0.8
3,886,355	-				-0.8
3,886,383	-				-2.6
3,886,542	+		DZA65_RS18070	0.18	-0.8
3,886,658	+		DZA65_RS18070	0.31	-1.5
3,886,658	+		DZA65_RS18070	0.31	-2.1
3,886,658	+		DZA65_RS18070	0.31	-0.3
3,886,659	-		DZA65_RS18070	0.31	-0.3
3,886,659	-		DZA65_RS18070	0.31	-0.5
3,886,688	+		DZA65_RS18070	0.34	-2.0
3,886,688	+		DZA65_RS18070	0.34	-1.0
3,886,688	+		DZA65_RS18070	0.34	-0.5
3,886,688	+		DZA65_RS18070	0.34	+0.5
3,886,688	+		DZA65_RS18070	0.34	-0.9
3,886,689	-		DZA65_RS18070	0.35	-1.3
3,886,689	-		DZA65_RS18070	0.35	+0.5
3,886,689	-		DZA65_RS18070	0.35	-0.7
3,886,689	-		DZA65_RS18070	0.35	-1.0
3,886,694	+		DZA65_RS18070	0.35	-0.5
3,886,694	+		DZA65_RS18070	0.35	-1.8
3,886,694	+				-1.5
3,886,694	+		DZA65_RS18070	0.35	-2.0
3,886,694	+		DZA65_RS18070	0.35	-0.4
3,886,694	+		DZA65_RS18070	0.35	-0.7
3,886,695	-		DZA65_RS18070	0.35	-0.8
3,886,695	-		DZA65_RS18070	0.35	-1.0
3,886,695	-		DZA65_RS18070	0.35	-0.6
3,886,770	+		DZA65_RS18070	0.43	-1.0
3,886,772	+		DZA65_RS18070	0.44	-0.0
3,886,772	+		DZA65_RS18070	0.44	-1.8
3,886,772	+		DZA65_RS18070	0.44	-2.9
3,886,772	+		DZA65_RS18070	0.44	+0.5
3,886,772	+		DZA65_RS18070	0.44	-0.9
3,886,772	+				-0.7
3,886,772	+		DZA65_RS18070	0.44	-3.4
3,886,773	-		DZA65_RS18070	0.44	+0.5
3,886,773	-		DZA65_RS18070	0.44	+0.8
3,886,773	-		DZA65_RS18070	0.44	-2.1
3,886,773	-		DZA65_RS18070	0.44	-0.7
3,886,773	-		DZA65_RS18070	0.44	-0.7
3,886,838	+		DZA65_RS18070	0.51	-1.5
3,886,839	-		DZA65_RS18070	0.51	+0.5
3,886,839	-		DZA65_RS18070	0.51	-1.0
3,886,839	-		DZA65_RS18070	0.51	+0.5
3,886,842	+		DZA65_RS18070	0.51	-0.5
3,886,842	+		DZA65_RS18070	0.51	-0.5
3,886,842	+		DZA65_RS18070	0.51	+0.5
3,886,842	+		DZA65_RS18070	0.51	-1.5
3,886,842	+		DZA65_RS18070	0.51	-2.5
3,886,842	+		DZA65_RS18070	0.51	-2.3
3,886,842	+		DZA65_RS18070	0.51	+0.8
3,886,842	+		DZA65_RS18070	0.51	-0.8
3,886,842	+		DZA65_RS18070	0.51	-1.3
3,886,843	-		DZA65_RS18070	0.51	-0.0
3,886,843	-		DZA65_RS18070	0.51	+0.0
3,886,843	-		DZA65_RS18070	0.51	+0.5
3,886,843	-		DZA65_RS18070	0.51	-0.8
3,886,843	-		DZA65_RS18070	0.51	-1.8
3,886,843	-		DZA65_RS18070	0.51	+0.5
3,886,843	-		DZA65_RS18070	0.51	+2.3
3,886,843	-		DZA65_RS18070	0.51	-0.5
3,886,907	+		DZA65_RS18070	0.59	-2.9
3,886,907	+		DZA65_RS18070	0.59	+0.9
3,886,907	+		DZA65_RS18070	0.59	-0.5
3,886,908	-		DZA65_RS18070	0.59	-2.8
3,886,908	-		DZA65_RS18070	0.59	-0.5
3,886,908	-		DZA65_RS18070	0.59	-0.2
3,886,908	-		DZA65_RS18070	0.59	-1.9
3,886,954	-		DZA65_RS18070	0.64	-0.0
3,887,036	+		DZA65_RS18070	0.73	-0.2
3,887,067	-		DZA65_RS18070	0.76	-1.5
3,887,183	+		DZA65_RS18070	0.89	-0.8
3,887,183	+		DZA65_RS18070	0.89	-2.3
3,887,183	+		DZA65_RS18070	0.89	+0.5
3,887,184	-		DZA65_RS18070	0.89	+0.5
3,887,184	-		DZA65_RS18070	0.89	-1.8
3,887,184	-		DZA65_RS18070	0.89	-1.2
3,887,202	+				-1.4
3,887,229	+				-2.0
3,887,229	+				+1.1
3,887,230	-				-0.7
3,887,230	-				-1.0
3,887,230	-				-1.0
3,887,235	+				-0.9
3,887,235	+				-0.1
3,887,235	+				-1.7
3,887,235	+				-0.5
3,887,236	-				-0.2
3,887,236	-				-0.5
3,887,236	-				+0.1
3,887,236	-				-0.6
3,887,236	-				-0.9
3,887,236	-				+0.1
3,887,258	-				-0.5
3,887,284	-				-1.8
3,887,289	+				-0.5
3,887,295	+				-3.2