Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15535

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,366,320	+				-0.4
3,366,379	+		DZA65_RS15530	0.15	-1.3
3,366,379	+		DZA65_RS15530	0.15	+1.0
3,366,380	-		DZA65_RS15530	0.15	-0.8
3,366,405	+		DZA65_RS15530	0.18	+0.0
3,366,406	-		DZA65_RS15530	0.18	+0.2
3,366,415	+		DZA65_RS15530	0.19	-0.0
3,366,415	+		DZA65_RS15530	0.19	+0.6
3,366,415	+		DZA65_RS15530	0.19	+0.8
3,366,415	+		DZA65_RS15530	0.19	-1.0
3,366,415	+		DZA65_RS15530	0.19	-0.1
3,366,416	-		DZA65_RS15530	0.19	+0.8
3,366,416	-		DZA65_RS15530	0.19	-1.2
3,366,416	-		DZA65_RS15530	0.19	+2.0
3,366,416	-		DZA65_RS15530	0.19	-0.3
3,366,421	-		DZA65_RS15530	0.20	+0.1
3,366,494	-		DZA65_RS15530	0.29	-1.8
3,366,531	+		DZA65_RS15530	0.33	+0.8
3,366,531	+		DZA65_RS15530	0.33	+0.8
3,366,532	-		DZA65_RS15530	0.33	-0.8
3,366,532	-		DZA65_RS15530	0.33	+1.2
3,366,643	-		DZA65_RS15530	0.47	+0.4
3,366,673	-		DZA65_RS15530	0.51	-1.0
3,366,745	+		DZA65_RS15530	0.60	-0.1
3,366,745	+		DZA65_RS15530	0.60	+2.4
3,366,746	-		DZA65_RS15530	0.60	+0.4
3,366,766	+		DZA65_RS15530	0.62	-1.4
3,366,766	+		DZA65_RS15530	0.62	-0.3
3,366,767	-		DZA65_RS15530	0.62	+0.2
3,366,767	-		DZA65_RS15530	0.62	-0.4
3,366,821	+		DZA65_RS15530	0.69	+1.7
3,366,837	+		DZA65_RS15530	0.71	+0.2
3,366,837	+		DZA65_RS15530	0.71	+0.1
3,366,837	+		DZA65_RS15530	0.71	-0.2
3,366,837	+		DZA65_RS15530	0.71	+0.2
3,366,838	-		DZA65_RS15530	0.71	-0.2
3,366,838	-		DZA65_RS15530	0.71	+1.1
3,366,838	-		DZA65_RS15530	0.71	-1.2
3,366,838	-		DZA65_RS15530	0.71	+0.2
3,366,838	-		DZA65_RS15530	0.71	+1.4
3,366,876	+		DZA65_RS15530	0.76	+0.8
3,366,876	+		DZA65_RS15530	0.76	+0.1
3,366,876	+		DZA65_RS15530	0.76	+0.8
3,366,876	+		DZA65_RS15530	0.76	+0.8
3,366,876	+		DZA65_RS15530	0.76	+0.7
3,366,877	-		DZA65_RS15530	0.76	-1.8
3,366,877	-		DZA65_RS15530	0.76	+0.8
3,366,877	-		DZA65_RS15530	0.76	+0.5
3,366,877	-		DZA65_RS15530	0.76	+1.4
3,366,917	+		DZA65_RS15530	0.81	-0.2
3,366,950	-		DZA65_RS15530	0.85	+0.8
3,366,950	-		DZA65_RS15530	0.85	+1.2
3,366,967	-		DZA65_RS15530	0.87	-0.3
3,366,999	+				-0.0
3,366,999	+				-1.0
3,366,999	+				-0.5
3,366,999	+				+0.8
3,367,000	-				-0.2
3,367,000	-				-0.8
3,367,027	+				+0.8
3,367,027	+				+0.3
3,367,027	+				-0.6
3,367,028	-				-0.8
3,367,034	-				+1.8
3,367,138	-				+1.2
3,367,173	+				+0.0
3,367,174	-				-0.2
3,367,243	+				-1.5
3,367,244	-				-0.2
3,367,248	+				-0.5
3,367,248	+				-0.8
3,367,248	+				+2.2
3,367,248	+				-0.5
3,367,248	+				-0.1
3,367,248	+				+1.2
3,367,248	+				-2.0
3,367,248	+				+0.8
3,367,249	-				+0.7
3,367,249	-				+2.2
3,367,254	+				+0.8
3,367,254	+				+0.4
3,367,255	-				-0.6
3,367,255	-				+0.1
3,367,255	-				+0.8
3,367,270	+				+1.0
3,367,270	+				+1.8
3,367,270	+				-0.8
3,367,270	+				-0.8
3,367,270	+				+0.8
3,367,270	+				-0.9
3,367,271	-				-0.8
3,367,271	-				+1.4
3,367,271	-				-0.8
3,367,271	-				+0.8
3,367,271	-				+1.8
3,367,369	+				-0.6
3,367,601	-		DZA65_RS15535	0.18	-0.3
3,367,633	+		DZA65_RS15535	0.20	-0.5
3,367,645	+		DZA65_RS15535	0.20	-1.0
3,367,645	+		DZA65_RS15535	0.20	-0.1
3,367,645	+		DZA65_RS15535	0.20	-0.2
3,367,645	+		DZA65_RS15535	0.20	+0.2
3,367,742	+		DZA65_RS15535	0.26	-1.8
3,367,742	+		DZA65_RS15535	0.26	+0.3
3,367,742	+		DZA65_RS15535	0.26	-0.2
3,367,743	-		DZA65_RS15535	0.26	-0.9
3,367,789	+		DZA65_RS15535	0.28	-1.1
3,367,790	-		DZA65_RS15535	0.28	-0.8
3,367,790	-		DZA65_RS15535	0.28	-0.8
3,367,790	-		DZA65_RS15535	0.28	+0.8
3,367,798	+		DZA65_RS15535	0.29	-0.3
3,367,798	+		DZA65_RS15535	0.29	+0.2
3,367,798	+		DZA65_RS15535	0.29	-0.4
3,367,798	+		DZA65_RS15535	0.29	-1.0
3,367,799	-		DZA65_RS15535	0.29	-2.0
3,367,799	-		DZA65_RS15535	0.29	-0.9
3,367,799	-		DZA65_RS15535	0.29	+0.8
3,367,799	-		DZA65_RS15535	0.29	-0.5
3,367,799	-		DZA65_RS15535	0.29	-0.2
3,367,801	+		DZA65_RS15535	0.29	-0.1
3,367,801	+		DZA65_RS15535	0.29	-0.8
3,367,801	+		DZA65_RS15535	0.29	+0.0
3,367,802	-				+2.8
3,367,858	+		DZA65_RS15535	0.32	+0.8
3,367,858	+		DZA65_RS15535	0.32	+0.8
3,367,858	+		DZA65_RS15535	0.32	-0.2
3,367,858	+		DZA65_RS15535	0.32	-0.4
3,367,858	+		DZA65_RS15535	0.32	+1.8
3,367,858	+		DZA65_RS15535	0.32	+0.8
3,367,858	+		DZA65_RS15535	0.32	-0.8
3,367,858	+		DZA65_RS15535	0.32	+0.8
3,367,858	+		DZA65_RS15535	0.32	-0.8
3,367,859	-		DZA65_RS15535	0.32	-1.6
3,367,859	-		DZA65_RS15535	0.32	+0.2
3,367,859	-		DZA65_RS15535	0.32	-2.4
3,367,859	-		DZA65_RS15535	0.32	-1.2
3,367,859	-		DZA65_RS15535	0.32	-1.5
3,367,859	-		DZA65_RS15535	0.32	-0.8
3,367,859	-		DZA65_RS15535	0.32	-2.0
3,367,859	-		DZA65_RS15535	0.32	+1.4
3,367,868	+		DZA65_RS15535	0.32	+0.1
3,368,177	+		DZA65_RS15535	0.49	+2.2
3,368,177	+		DZA65_RS15535	0.49	+0.8
3,368,177	+		DZA65_RS15535	0.49	+0.2
3,368,177	+		DZA65_RS15535	0.49	-0.8
3,368,177	+		DZA65_RS15535	0.49	-1.2
3,368,191	-		DZA65_RS15535	0.50	-0.2
3,368,201	+		DZA65_RS15535	0.50	-1.3
3,368,201	+		DZA65_RS15535	0.50	+1.8
3,368,202	-		DZA65_RS15535	0.50	+0.4
3,368,202	-		DZA65_RS15535	0.50	-0.0
3,368,202	-		DZA65_RS15535	0.50	-0.0
3,368,202	-		DZA65_RS15535	0.50	+0.1
3,368,208	+		DZA65_RS15535	0.51	-0.2
3,368,208	+		DZA65_RS15535	0.51	+0.6
3,368,208	+		DZA65_RS15535	0.51	+0.8
3,368,208	+		DZA65_RS15535	0.51	+0.8
3,368,208	+		DZA65_RS15535	0.51	+0.8
3,368,208	+		DZA65_RS15535	0.51	-0.8
3,368,209	-		DZA65_RS15535	0.51	+0.3
3,368,209	-		DZA65_RS15535	0.51	-0.6
3,368,209	-		DZA65_RS15535	0.51	-0.4
3,368,209	-		DZA65_RS15535	0.51	+0.1
3,368,209	-		DZA65_RS15535	0.51	-0.4
3,368,209	-		DZA65_RS15535	0.51	+0.8
3,368,213	+		DZA65_RS15535	0.51	-1.8
3,368,213	+		DZA65_RS15535	0.51	+0.5
3,368,214	-		DZA65_RS15535	0.51	-0.8
3,368,214	-		DZA65_RS15535	0.51	-0.8
3,368,257	+		DZA65_RS15535	0.53	+0.8
3,368,257	+		DZA65_RS15535	0.53	+0.9
3,368,258	-		DZA65_RS15535	0.54	+0.8
3,368,258	-		DZA65_RS15535	0.54	+0.3
3,368,258	-		DZA65_RS15535	0.54	-0.9
3,368,277	-		DZA65_RS15535	0.55	+0.4
3,368,305	+		DZA65_RS15535	0.56	-1.0
3,368,305	+		DZA65_RS15535	0.56	-0.6
3,368,305	+		DZA65_RS15535	0.56	-0.4
3,368,305	+		DZA65_RS15535	0.56	-0.4
3,368,306	-		DZA65_RS15535	0.56	-0.5
3,368,306	-		DZA65_RS15535	0.56	-0.6
3,368,306	-		DZA65_RS15535	0.56	-0.5
3,368,306	-		DZA65_RS15535	0.56	-1.2
3,368,306	-		DZA65_RS15535	0.56	+0.6
3,368,408	+		DZA65_RS15535	0.62	-1.0
3,368,408	+		DZA65_RS15535	0.62	+1.8
3,368,467	+		DZA65_RS15535	0.65	-1.2
3,368,468	-		DZA65_RS15535	0.65	-1.3
3,368,468	-		DZA65_RS15535	0.65	-0.2
3,368,474	-		DZA65_RS15535	0.65	+1.6
3,368,507	+		DZA65_RS15535	0.67	-2.5
3,368,507	+		DZA65_RS15535	0.67	-0.5
3,368,507	+		DZA65_RS15535	0.67	-0.5
3,368,507	+		DZA65_RS15535	0.67	-0.3
3,368,508	-		DZA65_RS15535	0.67	+0.1
3,368,508	-		DZA65_RS15535	0.67	-1.0
3,368,513	-		DZA65_RS15535	0.67	-0.2
3,368,536	+		DZA65_RS15535	0.69	+0.6
3,368,536	+		DZA65_RS15535	0.69	-0.3
3,368,536	+		DZA65_RS15535	0.69	-1.2
3,368,537	-		DZA65_RS15535	0.69	-1.2
3,368,537	-		DZA65_RS15535	0.69	-0.4
3,368,537	-		DZA65_RS15535	0.69	+0.3
3,368,537	-		DZA65_RS15535	0.69	+0.3
3,368,548	+		DZA65_RS15535	0.69	-0.1
3,368,548	+		DZA65_RS15535	0.69	+1.4
3,368,548	+		DZA65_RS15535	0.69	-0.2
3,368,549	-		DZA65_RS15535	0.69	-0.8
3,368,562	-		DZA65_RS15535	0.70	+0.4
3,368,802	-		DZA65_RS15535	0.83	-2.2
3,368,802	-		DZA65_RS15535	0.83	+1.2
3,368,802	-		DZA65_RS15535	0.83	-0.9
3,368,807	+		DZA65_RS15535	0.83	-1.3
3,368,818	+		DZA65_RS15535	0.84	+1.2
3,368,819	-		DZA65_RS15535	0.84	+1.8
3,368,819	-		DZA65_RS15535	0.84	-0.2
3,368,819	-		DZA65_RS15535	0.84	-1.5
3,368,934	-				-0.4
3,368,968	+				+1.4
3,368,968	+				-1.2
3,368,969	-				+1.1
3,368,984	+				-0.5
3,368,984	+				-1.0
3,368,985	-				+0.6
3,369,037	+				-0.3
3,369,038	-				+0.3
3,369,038	-				-1.5
3,369,063	-				-1.8
3,369,095	+				-0.0
3,369,095	+				-0.9
3,369,096	-				-0.9
3,369,096	-				+0.0
3,369,096	-				+0.7
3,369,105	+				+0.2
3,369,105	+				-2.5
3,369,105	+				+0.5
3,369,105	+				-0.8
3,369,105	+				+0.1
3,369,106	-				+1.1
3,369,116	+				-0.4
3,369,116	+				-0.8
3,369,116	+				-1.5
3,369,116	+				-0.0
3,369,116	+				-1.5
3,369,116	+				+0.8
3,369,116	+				+0.8
3,369,116	+				-1.2
3,369,116	+				-1.0
3,369,116	+				+1.2
3,369,116	+				-0.8
3,369,117	-				+0.0
3,369,117	-				-0.3
3,369,117	-				-0.8
3,369,117	-				+0.6
3,369,117	-				-0.2
3,369,117	-				-0.1
3,369,117	-				+0.2
3,369,117	-				-0.2
3,369,117	-				+0.4
3,369,117	-				+2.6
3,369,117	-				+0.2
3,369,117	-				+0.2
3,369,138	+				-0.5
3,369,138	+				+3.8
3,369,139	-				-1.8
3,369,139	-				-0.9
3,369,139	-				-0.5
3,369,139	-				+0.1
3,369,139	-				-0.5
3,369,213	+				-0.4
3,369,213	+				+1.8
3,369,213	+				-0.9
3,369,213	+				+1.1
3,369,213	+				-0.5
3,369,213	+				-2.3
3,369,213	+				+0.4
3,369,213	+				+0.2
3,369,214	-				+0.8
3,369,214	-				+0.5
3,369,214	-				-2.2
3,369,214	-				+0.1
3,369,214	-				-1.5
3,369,233	+				-0.2
3,369,233	+				-1.2
3,369,233	+				+2.2
3,369,233	+				-0.1
3,369,233	+				-1.6
3,369,234	-				-0.4
3,369,234	-				+0.8
3,369,234	-				-0.4
3,369,246	-				-0.2
3,369,264	-				+1.5
3,369,304	-				-2.0
3,369,309	+				+0.3
3,369,323	+				-1.2
3,369,328	-				-1.6
3,369,360	-				-0.2
3,369,360	-				+2.4
3,369,376	+				+0.3
3,369,377	-				-0.2
3,369,382	-				-0.7
3,369,392	+				-1.7
3,369,394	+				-1.0
3,369,446	+				-0.2
3,369,450	-				-0.4
3,369,459	-				+1.6
3,369,591	+				+0.3
3,369,592	-				+0.8
3,369,612	+				+0.8
3,369,612	+				-0.2
3,369,613	-				+0.0
3,369,740	+		DZA65_RS15540	0.11	-1.8
3,369,741	-		DZA65_RS15540	0.11	+0.0
3,369,741	-		DZA65_RS15540	0.11	+1.3
3,369,796	-		DZA65_RS15540	0.17	-1.5
3,369,871	-		DZA65_RS15540	0.25	+1.4
3,369,871	-		DZA65_RS15540	0.25	-1.7
3,369,946	+		DZA65_RS15540	0.32	+0.3
3,369,946	+		DZA65_RS15540	0.32	-0.0
3,369,946	+		DZA65_RS15540	0.32	-0.7
3,369,946	+		DZA65_RS15540	0.32	-0.1
3,369,946	+		DZA65_RS15540	0.32	+0.8
3,369,946	+		DZA65_RS15540	0.32	-0.7
3,369,946	+		DZA65_RS15540	0.32	-1.7
3,369,947	-		DZA65_RS15540	0.32	+0.8
3,369,947	-		DZA65_RS15540	0.32	-0.8
3,369,947	-		DZA65_RS15540	0.32	-0.9
3,369,947	-		DZA65_RS15540	0.32	+0.3
3,369,947	-		DZA65_RS15540	0.32	+1.1
3,370,039	+		DZA65_RS15540	0.42	-1.2
3,370,039	+		DZA65_RS15540	0.42	+0.8
3,370,039	+		DZA65_RS15540	0.42	-1.2
3,370,039	+		DZA65_RS15540	0.42	+0.0
3,370,039	+		DZA65_RS15540	0.42	-0.5
3,370,039	+		DZA65_RS15540	0.42	-0.3
3,370,040	-		DZA65_RS15540	0.42	-2.3
3,370,040	-		DZA65_RS15540	0.42	-0.7
3,370,040	-		DZA65_RS15540	0.42	+1.6
3,370,040	-		DZA65_RS15540	0.42	-1.2
3,370,040	-		DZA65_RS15540	0.42	-1.5
3,370,040	-		DZA65_RS15540	0.42	+0.7
3,370,089	+		DZA65_RS15540	0.47	-0.9
3,370,089	+		DZA65_RS15540	0.47	-1.5
3,370,114	+		DZA65_RS15540	0.49	+0.1