Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08800

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,859,983	+		DZA65_RS08795	0.28	-1.3
1,859,983	+		DZA65_RS08795	0.28	-0.9
1,859,983	+		DZA65_RS08795	0.28	-0.2
1,859,983	+		DZA65_RS08795	0.28	-0.3
1,859,983	+		DZA65_RS08795	0.28	-1.6
1,859,984	-		DZA65_RS08795	0.28	+0.3
1,859,984	-		DZA65_RS08795	0.28	-1.9
1,859,984	-		DZA65_RS08795	0.28	-2.6
1,859,986	-		DZA65_RS08795	0.28	-0.5
1,859,986	-		DZA65_RS08795	0.28	-0.3
1,859,986	-		DZA65_RS08795	0.28	+1.0
1,860,004	+		DZA65_RS08795	0.30	-0.2
1,860,004	+		DZA65_RS08795	0.30	+0.5
1,860,005	-		DZA65_RS08795	0.30	-2.1
1,860,005	-		DZA65_RS08795	0.30	-2.7
1,860,087	+		DZA65_RS08795	0.38	+0.0
1,860,087	+		DZA65_RS08795	0.38	+0.4
1,860,088	-		DZA65_RS08795	0.38	-3.1
1,860,088	-		DZA65_RS08795	0.38	+0.3
1,860,088	-		DZA65_RS08795	0.38	-0.3
1,860,088	-		DZA65_RS08795	0.38	+0.4
1,860,234	+		DZA65_RS08795	0.53	-1.1
1,860,234	+		DZA65_RS08795	0.53	-0.1
1,860,235	-		DZA65_RS08795	0.53	+0.3
1,860,235	-		DZA65_RS08795	0.53	+0.2
1,860,235	-		DZA65_RS08795	0.53	-1.1
1,860,408	+		DZA65_RS08795	0.71	-0.9
1,860,546	+		DZA65_RS08795	0.85	+0.3
1,860,567	+		DZA65_RS08795	0.87	-0.4
1,860,647	+				+0.7
1,860,680	-				-0.7
1,860,680	-				+0.7
1,860,717	+				+0.7
1,860,718	-				+0.2
1,860,718	-				+2.5
1,860,718	-				-1.2
1,860,718	-				-0.9
1,860,718	-				+0.5
1,860,725	+				+0.5
1,860,725	+				+0.7
1,860,725	+				+0.0
1,860,726	-				+0.0
1,860,726	-				+0.1
1,860,726	-				-0.9
1,860,726	-				-1.2
1,860,726	-				-0.7
1,860,726	-				+0.5
1,860,726	-				+0.7
1,860,729	+				+1.0
1,860,729	+				-0.5
1,860,729	+				+0.4
1,860,730	-				-1.0
1,860,733	+				+0.2
1,860,733	+				-0.5
1,860,734	-				+0.9
1,860,734	-				-0.5
1,860,734	-				-0.3
1,860,734	-				+0.1
1,860,734	-				+0.7
1,860,734	-				+2.1
1,860,734	-				-0.0
1,860,734	-				-1.9
1,860,734	-				-1.3
1,860,734	-				-0.5
1,860,737	+				-1.7
1,860,737	+				+0.1
1,860,737	+				-1.3
1,860,737	+				-1.4
1,860,738	-				+1.7
1,860,738	-				-1.4
1,860,738	-				-1.2
1,860,738	-				+1.1
1,860,741	+				+1.0
1,860,741	+				+1.7
1,860,741	+				-0.7
1,860,741	+				+0.7
1,860,742	-				+0.4
1,860,742	-				-0.5
1,860,823	+				-0.1
1,860,823	+				+1.0
1,860,824	-				+0.3
1,860,824	-				+0.7
1,860,912	+				-0.4
1,860,913	-				-0.4
1,860,913	-				+0.1
1,860,913	-				-0.7
1,861,013	-		DZA65_RS08800	0.12	+2.1
1,861,013	-		DZA65_RS08800	0.12	+0.4
1,861,013	-		DZA65_RS08800	0.12	-0.9
1,861,049	+		DZA65_RS08800	0.19	-1.1
1,861,049	+		DZA65_RS08800	0.19	-1.1
1,861,049	+		DZA65_RS08800	0.19	-0.3
1,861,049	+		DZA65_RS08800	0.19	-1.4
1,861,049	+		DZA65_RS08800	0.19	-1.3
1,861,049	+		DZA65_RS08800	0.19	+0.3
1,861,050	-		DZA65_RS08800	0.20	-0.6
1,861,050	-		DZA65_RS08800	0.20	-0.4
1,861,050	-		DZA65_RS08800	0.20	-1.4
1,861,050	-		DZA65_RS08800	0.20	-1.7
1,861,071	+		DZA65_RS08800	0.24	-0.3
1,861,112	+		DZA65_RS08800	0.32	-2.1
1,861,200	+		DZA65_RS08800	0.50	-1.9
1,861,200	+		DZA65_RS08800	0.50	-0.9
1,861,200	+		DZA65_RS08800	0.50	+0.7
1,861,222	+		DZA65_RS08800	0.54	-0.4
1,861,222	+		DZA65_RS08800	0.54	-1.3
1,861,223	-		DZA65_RS08800	0.55	-0.6
1,861,231	+		DZA65_RS08800	0.56	-0.6
1,861,231	+		DZA65_RS08800	0.56	+1.0
1,861,232	-		DZA65_RS08800	0.57	-1.8
1,861,232	-		DZA65_RS08800	0.57	-2.3
1,861,232	-		DZA65_RS08800	0.57	-1.6
1,861,249	+		DZA65_RS08800	0.60	+1.0
1,861,249	+		DZA65_RS08800	0.60	-0.3
1,861,249	+		DZA65_RS08800	0.60	+1.3
1,861,249	+		DZA65_RS08800	0.60	+0.4
1,861,250	-		DZA65_RS08800	0.60	-0.9
1,861,250	-		DZA65_RS08800	0.60	-1.6
1,861,271	+		DZA65_RS08800	0.64	+0.1
1,861,271	+		DZA65_RS08800	0.64	-2.4
1,861,271	+		DZA65_RS08800	0.64	-1.3
1,861,272	-		DZA65_RS08800	0.65	-1.4
1,861,347	-		DZA65_RS08800	0.80	+0.1
1,861,443	+				-0.3
1,861,443	+				-2.4
1,861,443	+				-0.9
1,861,444	-				-1.1
1,861,444	-				+0.3
1,861,446	+				-0.4
1,861,446	+				-1.3
1,861,446	+				+0.4
1,861,446	+				+0.3
1,861,446	+				-0.3
1,861,446	+				-0.7
1,861,446	+				-1.5
1,861,446	+				+0.7
1,861,446	+				-1.3
1,861,446	+				+0.2
1,861,447	-				+0.9
1,861,447	-				+1.3
1,861,447	-				+0.2
1,861,447	-				-1.6
1,861,447	-				+0.5
1,861,447	-				-0.6
1,861,447	-				+2.5
1,861,447	-				-1.3
1,861,450	+				+0.4
1,861,450	+				-0.3
1,861,450	+				-0.3
1,861,450	+				+1.5
1,861,450	+				+1.7
1,861,450	+				+0.0
1,861,451	-				+0.2
1,861,451	-				-0.0
1,861,451	-				-1.9
1,861,451	-				+1.3
1,861,468	+				-0.1
1,861,468	+				+0.3
1,861,468	+				+0.7
1,861,468	+				-0.9
1,861,468	+				+0.5
1,861,468	+				+0.7
1,861,468	+				+0.2
1,861,468	+				-0.6
1,861,468	+				+0.4
1,861,468	+				+1.1
1,861,468	+				+0.3
1,861,468	+				+0.4
1,861,468	+				+1.0
1,861,468	+				-1.6
1,861,468	+				-0.1
1,861,469	-				-0.2
1,861,469	-				-0.1
1,861,469	-				-0.9
1,861,469	-				+1.1
1,861,469	-				+0.2
1,861,469	-				-2.1
1,861,469	-				+0.2
1,861,469	-				-2.2
1,861,469	-				-1.2
1,861,469	-				-0.9
1,861,469	-				+0.9
1,861,469	-				+0.7
1,861,469	-				+1.5
1,861,529	+				-2.4
1,861,529	+				+2.3
1,861,529	+				-1.3
1,861,530	-				-0.9
1,861,530	-				+0.7
1,861,605	+		DZA65_RS08805	0.46	-0.3
1,861,606	-		DZA65_RS08805	0.46	-0.3
1,861,606	-		DZA65_RS08805	0.46	-0.3
1,861,606	-		DZA65_RS08805	0.46	-1.9
1,861,606	-		DZA65_RS08805	0.46	-0.6
1,861,606	-		DZA65_RS08805	0.46	+0.7
1,861,629	+		DZA65_RS08805	0.61	-0.3
1,861,629	+		DZA65_RS08805	0.61	-0.5
1,861,629	+		DZA65_RS08805	0.61	-0.4
1,861,630	-		DZA65_RS08805	0.62	-1.0
1,861,630	-		DZA65_RS08805	0.62	+0.4
1,861,634	+		DZA65_RS08805	0.65	-1.9
1,861,634	+		DZA65_RS08805	0.65	-1.3
1,861,634	+		DZA65_RS08805	0.65	+2.3
1,861,635	-		DZA65_RS08805	0.65	+1.0
1,861,635	-		DZA65_RS08805	0.65	+1.2
1,861,683	+				-1.0
1,861,684	-				-0.3
1,861,684	-				-0.9
1,861,684	-				-0.6
1,861,684	-				+0.1
1,861,698	+				+0.5
1,861,699	-				-1.2
1,861,742	-				+0.9
1,861,742	-				+0.1
1,862,312	-		DZA65_RS08810	0.84	-0.4
1,862,366	+				-0.3
1,862,408	+				-0.1
1,862,408	+				+0.5