Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08640

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,828,749	+		DZA65_RS08635	0.21	-0.9
1,828,801	+		DZA65_RS08635	0.26	+1.7
1,828,801	+				-0.3
1,828,918	+		DZA65_RS08635	0.36	+0.5
1,828,919	-		DZA65_RS08635	0.36	+0.2
1,828,919	-		DZA65_RS08635	0.36	-2.0
1,828,919	-		DZA65_RS08635	0.36	-0.0
1,828,927	+		DZA65_RS08635	0.37	-1.2
1,828,927	+		DZA65_RS08635	0.37	+0.5
1,828,927	+		DZA65_RS08635	0.37	-1.3
1,828,928	-		DZA65_RS08635	0.37	-0.4
1,828,955	+		DZA65_RS08635	0.40	-0.5
1,828,955	+		DZA65_RS08635	0.40	-0.5
1,828,955	+		DZA65_RS08635	0.40	+0.7
1,828,955	+		DZA65_RS08635	0.40	+0.6
1,829,020	+		DZA65_RS08635	0.45	+0.1
1,829,042	-		DZA65_RS08635	0.47	-0.4
1,829,113	+		DZA65_RS08635	0.54	-0.6
1,829,221	+		DZA65_RS08635	0.63	-1.3
1,829,222	-		DZA65_RS08635	0.63	+0.4
1,829,222	-		DZA65_RS08635	0.63	-0.4
1,829,222	-		DZA65_RS08635	0.63	-0.2
1,829,222	-		DZA65_RS08635	0.63	-0.3
1,829,222	-		DZA65_RS08635	0.63	-0.7
1,829,351	-		DZA65_RS08635	0.75	-0.3
1,829,351	-		DZA65_RS08635	0.75	+0.7
1,829,352	+		DZA65_RS08635	0.75	+1.3
1,829,353	-		DZA65_RS08635	0.75	-0.3
1,829,353	-		DZA65_RS08635	0.75	-1.0
1,829,353	-		DZA65_RS08635	0.75	+1.7
1,829,358	+		DZA65_RS08635	0.76	-0.3
1,829,443	-		DZA65_RS08635	0.83	-1.3
1,829,503	+		DZA65_RS08635	0.89	+1.7
1,829,504	-		DZA65_RS08635	0.89	+0.4
1,829,504	-		DZA65_RS08635	0.89	-1.4
1,829,504	-				+0.7
1,829,504	-		DZA65_RS08635	0.89	-1.6
1,829,504	-		DZA65_RS08635	0.89	+0.1
1,829,530	+				+0.3
1,829,639	+				+1.7
1,829,639	+				-0.6
1,829,639	+				+0.3
1,829,639	+				-0.7
1,829,639	+				+1.0
1,829,639	+				+0.1
1,829,640	-				+0.2
1,829,651	+				-0.7
1,829,651	+				-1.0
1,829,652	-				+0.2
1,829,652	-				-1.6
1,829,856	+		DZA65_RS08640	0.16	-0.3
1,829,856	+		DZA65_RS08640	0.16	-1.0
1,829,857	-		DZA65_RS08640	0.16	-2.1
1,829,857	-		DZA65_RS08640	0.16	-0.0
1,829,978	+		DZA65_RS08640	0.25	-1.2
1,830,050	+		DZA65_RS08640	0.31	+0.9
1,830,051	-		DZA65_RS08640	0.31	-0.3
1,830,236	+		DZA65_RS08640	0.45	-0.5
1,830,237	-		DZA65_RS08640	0.45	+0.1
1,830,489	+		DZA65_RS08640	0.64	-0.7
1,830,490	-		DZA65_RS08640	0.64	-0.9
1,830,627	+		DZA65_RS08640	0.75	-0.6
1,830,628	-		DZA65_RS08640	0.75	-1.1
1,830,738	+		DZA65_RS08640	0.83	-0.2
1,830,864	+				-1.4
1,830,864	+				-1.1
1,830,864	+				-0.4
1,830,864	+				-0.4
1,830,864	+				-0.6
1,830,865	-				-1.1
1,830,865	-				-0.2
1,830,865	-				-1.9
1,830,865	-				-0.3
1,830,865	-				+0.2
1,830,865	-				-0.6
1,830,865	-				-0.1
1,830,865	-				-0.1
1,830,865	-				-0.4
1,830,888	+				-0.2
1,830,954	+				+0.4
1,830,954	+				+1.0
1,830,954	+				+0.2
1,830,954	+				-0.5
1,830,954	+				+0.2
1,830,955	-				-0.5
1,830,969	+				+0.4
1,830,969	+				-1.0
1,830,969	+				-1.9
1,830,970	-				-0.9
1,830,970	-				-0.3
1,830,970	-				-0.3
1,830,980	+				-1.0
1,830,981	-				+0.2
1,830,981	-				-0.6
1,830,983	+				+0.6
1,830,983	+				-0.6
1,830,984	-				+0.1
1,830,984	-				+0.1
1,831,092	+		DZA65_RS08645	0.39	+0.1
1,831,092	+		DZA65_RS08645	0.39	-1.6
1,831,092	+		DZA65_RS08645	0.39	-0.3
1,831,093	-		DZA65_RS08645	0.39	+0.0
1,831,093	-		DZA65_RS08645	0.39	-0.3
1,831,093	-		DZA65_RS08645	0.39	-0.3
1,831,120	-		DZA65_RS08645	0.51	+0.3
1,831,304	+				-2.0
1,831,304	+				+1.3
1,831,305	-				-0.4
1,831,306	+				+1.0
1,831,306	+				-0.3
1,831,306	+				+0.0
1,831,306	+				-1.0
1,831,307	-				+1.3
1,831,307	-				-0.7
1,831,307	-				-0.3
1,831,307	-				-0.4
1,831,307	-				+0.7
1,831,307	-				+1.7
1,831,309	+				+1.7
1,831,310	-				+2.7
1,831,310	-				-0.5
1,831,310	-				+0.0
1,831,338	-				-0.3
1,831,354	+				-0.5
1,831,354	+				+0.7
1,831,354	+				+0.3
1,831,354	+				+1.0
1,831,354	+				-0.9
1,831,355	-				-1.4
1,831,355	-				+0.7
1,831,364	+				-0.3
1,831,364	+				-1.6
1,831,365	-				+0.7
1,831,365	-				-0.1
1,831,365	-				-0.6
1,831,365	-				-0.9
1,831,376	-				-2.1
1,831,596	+		DZA65_RS08650	0.29	-0.4
1,831,596	+		DZA65_RS08650	0.29	-0.3
1,831,596	+		DZA65_RS08650	0.29	+1.5
1,831,647	-		DZA65_RS08650	0.35	+1.7
1,831,647	-		DZA65_RS08650	0.35	-1.3
1,831,689	+		DZA65_RS08650	0.41	-0.7
1,831,689	+		DZA65_RS08650	0.41	-0.7
1,831,689	+		DZA65_RS08650	0.41	+0.7
1,831,689	+		DZA65_RS08650	0.41	+0.4
1,831,690	-		DZA65_RS08650	0.41	-1.3
1,831,690	-		DZA65_RS08650	0.41	-1.1
1,831,690	-		DZA65_RS08650	0.41	+0.4
1,831,690	-		DZA65_RS08650	0.41	-1.2
1,831,690	-		DZA65_RS08650	0.41	-1.9
1,831,706	-		DZA65_RS08650	0.43	-0.5
1,831,730	+		DZA65_RS08650	0.46	-0.3
1,831,730	+		DZA65_RS08650	0.46	+0.3
1,831,730	+		DZA65_RS08650	0.46	-0.9
1,831,730	+		DZA65_RS08650	0.46	+1.0
1,831,730	+		DZA65_RS08650	0.46	+0.3
1,831,731	-		DZA65_RS08650	0.46	+0.9
1,831,731	-		DZA65_RS08650	0.46	+0.0
1,831,731	-		DZA65_RS08650	0.46	+0.7
1,831,731	-		DZA65_RS08650	0.46	+0.5
1,831,731	-		DZA65_RS08650	0.46	-1.2
1,831,731	-		DZA65_RS08650	0.46	-0.3
1,831,733	+		DZA65_RS08650	0.47	+0.1
1,831,733	+		DZA65_RS08650	0.47	-1.1
1,831,733	+		DZA65_RS08650	0.47	+2.0
1,831,734	-		DZA65_RS08650	0.47	+0.5
1,831,734	-		DZA65_RS08650	0.47	+1.0
1,831,734	-		DZA65_RS08650	0.47	-1.6
1,831,796	+		DZA65_RS08650	0.55	-0.2
1,831,828	+		DZA65_RS08650	0.59	-0.6
1,831,828	+		DZA65_RS08650	0.59	+1.0
1,831,828	+		DZA65_RS08650	0.59	-0.9
1,831,828	+		DZA65_RS08650	0.59	-0.2
1,831,828	+		DZA65_RS08650	0.59	+0.5
1,831,828	+		DZA65_RS08650	0.59	-0.5
1,831,829	-		DZA65_RS08650	0.59	-2.4
1,831,829	-		DZA65_RS08650	0.59	-1.6
1,831,829	-		DZA65_RS08650	0.59	-0.3