Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07820

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
1,629,243	+				-1.7
1,629,243	+				-0.6
1,629,257	-				-1.6
1,629,257	-				+0.5
1,629,272	+				-0.0
1,629,288	+				-0.5
1,629,289	-				+0.9
1,629,289	-				+2.2
1,629,304	+				+0.1
1,629,304	+				-0.5
1,629,304	+				-0.2
1,629,305	-				-1.2
1,629,305	-				-1.0
1,629,305	-				-0.0
1,629,424	+		DZA65_RS07810	0.19	-0.8
1,629,424	+		DZA65_RS07810	0.19	-0.2
1,629,424	+		DZA65_RS07810	0.19	-1.3
1,629,425	-		DZA65_RS07810	0.20	-0.3
1,629,425	-		DZA65_RS07810	0.20	-2.6
1,629,425	-		DZA65_RS07810	0.20	-0.9
1,629,425	-		DZA65_RS07810	0.20	+2.8
1,629,499	+		DZA65_RS07810	0.35	-2.6
1,629,499	+		DZA65_RS07810	0.35	+0.8
1,629,499	+		DZA65_RS07810	0.35	+0.4
1,629,499	+		DZA65_RS07810	0.35	-2.0
1,629,500	-		DZA65_RS07810	0.35	-1.0
1,629,500	-		DZA65_RS07810	0.35	-0.2
1,629,500	-		DZA65_RS07810	0.35	-1.1
1,629,500	-		DZA65_RS07810	0.35	-1.6
1,629,500	-		DZA65_RS07810	0.35	+0.8
1,629,521	+		DZA65_RS07810	0.39	+0.8
1,629,787	+				+1.8
1,629,787	+				-2.2
1,629,787	+				+1.0
1,629,787	+				-0.6
1,629,788	-				-0.0
1,629,788	-				-0.6
1,629,788	-				+0.8
1,629,788	-				+1.8
1,629,788	-				-0.6
1,629,788	-				+0.2
1,629,788	-				+0.5
1,629,788	-				-1.6
1,629,789	+				-0.8
1,629,790	-				-0.2
1,629,808	-				+0.0
1,629,814	+				+0.1
1,629,845	+				-0.6
1,629,845	+				-0.2
1,629,845	+				+2.3
1,629,845	+				+0.0
1,629,845	+				-1.0
1,629,845	+				-1.0
1,629,845	+				-1.1
1,629,846	-				-0.6
1,629,846	-				-1.4
1,629,846	-				+0.8
1,629,846	-				-0.2
1,629,846	-				-1.6
1,629,846	-				+0.5
1,629,846	-				-0.6
1,629,849	+				-1.4
1,629,878	+		DZA65_RS07815	0.15	-1.0
1,629,879	-		DZA65_RS07815	0.16	+0.7
1,629,912	+		DZA65_RS07815	0.24	+1.1
1,629,912	+		DZA65_RS07815	0.24	-2.7
1,629,912	+		DZA65_RS07815	0.24	-1.0
1,629,913	-		DZA65_RS07815	0.24	+0.2
1,629,913	-		DZA65_RS07815	0.24	-0.6
1,630,052	+		DZA65_RS07815	0.59	+0.0
1,630,052	+		DZA65_RS07815	0.59	-0.8
1,630,052	+		DZA65_RS07815	0.59	-0.0
1,630,127	+		DZA65_RS07815	0.78	-0.6
1,630,128	-		DZA65_RS07815	0.78	-0.4
1,630,128	-		DZA65_RS07815	0.78	-0.1
1,630,130	+		DZA65_RS07815	0.78	-0.8
1,630,130	+		DZA65_RS07815	0.78	+1.8
1,630,130	+		DZA65_RS07815	0.78	-0.8
1,630,130	+		DZA65_RS07815	0.78	-2.7
1,630,130	+		DZA65_RS07815	0.78	-0.8
1,630,130	+				+0.8
1,630,130	+		DZA65_RS07815	0.78	-0.2
1,630,130	+		DZA65_RS07815	0.78	-0.4
1,630,130	+		DZA65_RS07815	0.78	+1.0
1,630,130	+		DZA65_RS07815	0.78	-2.0
1,630,130	+		DZA65_RS07815	0.78	+0.8
1,630,130	+		DZA65_RS07815	0.78	-0.8
1,630,130	+		DZA65_RS07815	0.78	-0.8
1,630,130	+		DZA65_RS07815	0.78	-0.8
1,630,130	+		DZA65_RS07815	0.78	-0.1
1,630,130	+		DZA65_RS07815	0.78	-0.6
1,630,130	+		DZA65_RS07815	0.78	+0.3
1,630,130	+		DZA65_RS07815	0.78	-0.7
1,630,130	+		DZA65_RS07815	0.78	-0.2
1,630,130	+		DZA65_RS07815	0.78	+1.8
1,630,130	+		DZA65_RS07815	0.78	+0.6
1,630,130	+		DZA65_RS07815	0.78	-0.3
1,630,130	+		DZA65_RS07815	0.78	-0.2
1,630,130	+		DZA65_RS07815	0.78	-1.8
1,630,130	+		DZA65_RS07815	0.78	+1.8
1,630,131	-		DZA65_RS07815	0.79	+1.1
1,630,131	-		DZA65_RS07815	0.79	-0.2
1,630,131	-		DZA65_RS07815	0.79	+0.8
1,630,131	-		DZA65_RS07815	0.79	-0.2
1,630,131	-		DZA65_RS07815	0.79	+1.5
1,630,131	-		DZA65_RS07815	0.79	-0.5
1,630,131	-		DZA65_RS07815	0.79	-1.2
1,630,131	-		DZA65_RS07815	0.79	-0.2
1,630,131	-		DZA65_RS07815	0.79	-0.3
1,630,131	-		DZA65_RS07815	0.79	+0.4
1,630,131	-		DZA65_RS07815	0.79	+1.0
1,630,131	-		DZA65_RS07815	0.79	+0.8
1,630,156	+		DZA65_RS07815	0.85	+0.3
1,630,156	+		DZA65_RS07815	0.85	+0.3
1,630,157	-		DZA65_RS07815	0.85	+1.8
1,630,157	-		DZA65_RS07815	0.85	-0.0
1,630,196	+				+0.3
1,630,247	-				+0.2
1,630,294	+		DZA65_RS07820	0.10	-0.8
1,630,295	-		DZA65_RS07820	0.10	-0.7
1,630,585	+		DZA65_RS07820	0.47	+1.8
1,630,585	+		DZA65_RS07820	0.47	+0.4
1,630,585	+		DZA65_RS07820	0.47	-1.2
1,630,585	+		DZA65_RS07820	0.47	-0.8
1,630,585	+		DZA65_RS07820	0.47	+1.5
1,630,585	+		DZA65_RS07820	0.47	+0.5
1,630,585	+		DZA65_RS07820	0.47	+0.5
1,630,586	-		DZA65_RS07820	0.47	-0.8
1,630,586	-		DZA65_RS07820	0.47	-1.8
1,630,586	-		DZA65_RS07820	0.47	-0.6
1,630,586	-		DZA65_RS07820	0.47	-1.8
1,630,586	-		DZA65_RS07820	0.47	+1.0
1,630,586	-		DZA65_RS07820	0.47	+0.8
1,630,586	-		DZA65_RS07820	0.47	+0.2
1,630,586	-		DZA65_RS07820	0.47	-0.2
1,630,586	-		DZA65_RS07820	0.47	+1.8
1,630,586	-		DZA65_RS07820	0.47	+0.0
1,630,586	-		DZA65_RS07820	0.47	+0.6
1,630,586	-		DZA65_RS07820	0.47	+1.8
1,630,586	-		DZA65_RS07820	0.47	+1.8
1,630,586	-		DZA65_RS07820	0.47	+0.1
1,630,630	+		DZA65_RS07820	0.53	+1.4
1,630,631	-		DZA65_RS07820	0.53	+0.4
1,630,673	-		DZA65_RS07820	0.58	+0.0
1,630,829	+		DZA65_RS07820	0.78	+1.1
1,630,830	-		DZA65_RS07820	0.78	-1.6
1,630,830	-		DZA65_RS07820	0.78	-0.3
1,630,849	-		DZA65_RS07820	0.80	-0.4
1,630,849	-		DZA65_RS07820	0.80	-0.8
1,630,886	-		DZA65_RS07820	0.85	+1.0
1,630,892	-		DZA65_RS07820	0.86	-0.6
1,630,892	-		DZA65_RS07820	0.86	-0.5
1,630,892	-		DZA65_RS07820	0.86	+0.8
1,630,892	-		DZA65_RS07820	0.86	+1.8
1,630,892	-		DZA65_RS07820	0.86	+0.2
1,630,892	-		DZA65_RS07820	0.86	+0.2
1,630,955	+				+0.8
1,630,955	+				-1.4
1,630,956	-				-0.6
1,630,956	-				+0.0
1,630,973	-				+0.1
1,630,997	+				-0.8
1,630,997	+				+0.2
1,630,997	+				+0.8
1,630,997	+				-0.8
1,630,998	-				-0.6
1,630,998	-				-1.6
1,630,998	-				-0.6
1,631,129	+		DZA65_RS07825	0.23	-0.8
1,631,129	+		DZA65_RS07825	0.23	-0.2
1,631,130	-		DZA65_RS07825	0.23	-0.8
1,631,130	-		DZA65_RS07825	0.23	-1.2
1,631,130	-		DZA65_RS07825	0.23	-0.8
1,631,250	+		DZA65_RS07825	0.44	-1.0
1,631,251	-		DZA65_RS07825	0.44	+2.6
1,631,251	-		DZA65_RS07825	0.44	-1.0
1,631,251	-		DZA65_RS07825	0.44	-0.2
1,631,251	-		DZA65_RS07825	0.44	-0.5
1,631,431	+		DZA65_RS07825	0.76	-1.4
1,631,431	+		DZA65_RS07825	0.76	+0.4
1,631,432	-		DZA65_RS07825	0.76	+0.4
1,631,432	-		DZA65_RS07825	0.76	+1.0
1,631,432	-		DZA65_RS07825	0.76	+0.5
1,631,466	+		DZA65_RS07825	0.82	-2.0
1,631,467	-		DZA65_RS07825	0.82	-1.2
1,631,517	+				+1.8
1,631,517	+				+0.6
1,631,563	+				-1.8
1,631,563	+				-0.2
1,631,563	+				-0.9
1,631,563	+				-1.2
1,631,564	-				+2.4
1,631,564	-				-0.2
1,631,564	-				-0.2
1,631,564	-				-0.6
1,631,564	-				-0.5
1,631,688	-				-0.6
1,631,695	+				+2.2
1,631,695	+				+1.1
1,631,695	+				-0.4
1,631,756	+		DZA65_RS07830	0.10	-2.0
1,631,756	+		DZA65_RS07830	0.10	+1.8
1,631,757	-		DZA65_RS07830	0.10	+0.8
1,631,757	-		DZA65_RS07830	0.10	-1.2
1,631,757	-		DZA65_RS07830	0.10	-0.2
1,631,757	-		DZA65_RS07830	0.10	+1.0
1,631,782	+		DZA65_RS07830	0.12	+0.4
1,631,783	-		DZA65_RS07830	0.12	-1.1
1,631,877	+		DZA65_RS07830	0.17	-1.0
1,631,877	+		DZA65_RS07830	0.17	+0.6
1,631,878	-		DZA65_RS07830	0.17	+0.8
1,631,899	+		DZA65_RS07830	0.18	-1.5