Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03325

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03315 and DZA65_RS03320 are separated by 99 nucleotidesDZA65_RS03320 and DZA65_RS03325 are separated by 122 nucleotidesDZA65_RS03325 and DZA65_RS03330 are separated by 1 nucleotidesDZA65_RS03330 and DZA65_RS03335 overlap by 1 nucleotides DZA65_RS03315: DZA65_RS03315 - phosphopentomutase, at 702,220 to 703,443 _RS03315 DZA65_RS03320: DZA65_RS03320 - purine-nucleoside phosphorylase, at 703,543 to 704,268 _RS03320 DZA65_RS03325: DZA65_RS03325 - ATP-grasp domain-containing protein, at 704,391 to 705,629 _RS03325 DZA65_RS03330: DZA65_RS03330 - EamA family transporter, at 705,631 to 706,563 _RS03330 DZA65_RS03335: DZA65_RS03335 - YggS family pyridoxal phosphate-dependent enzyme, at 706,563 to 707,222 _RS03335 Position (kb) 704 705 706Strain fitness (log2 ratio) -2 -1 0 1 2at 703.465 kb on - strandat 703.492 kb on - strandat 703.493 kb on + strandat 703.493 kb on + strandat 703.493 kb on + strandat 703.495 kb on + strandat 703.495 kb on + strandat 703.495 kb on + strandat 703.495 kb on + strandat 703.495 kb on + strandat 703.495 kb on + strandat 703.495 kb on + strandat 703.495 kb on + strandat 703.496 kb on - strandat 703.496 kb on - strandat 703.496 kb on - strandat 703.548 kb on + strandat 703.549 kb on - strandat 703.557 kb on + strandat 703.557 kb on + strandat 703.557 kb on + strandat 703.557 kb on + strandat 703.557 kb on + strandat 703.557 kb on + strandat 703.557 kb on + strandat 703.557 kb on + strandat 703.558 kb on - strandat 703.558 kb on - strandat 703.624 kb on + strand, within DZA65_RS03320at 703.625 kb on - strand, within DZA65_RS03320at 703.625 kb on - strand, within DZA65_RS03320at 703.625 kb on - strand, within DZA65_RS03320at 703.700 kb on - strand, within DZA65_RS03320at 703.759 kb on + strand, within DZA65_RS03320at 703.759 kb on + strand, within DZA65_RS03320at 704.023 kb on + strand, within DZA65_RS03320at 704.024 kb on - strand, within DZA65_RS03320at 704.024 kb on - strand, within DZA65_RS03320at 704.062 kb on + strand, within DZA65_RS03320at 704.101 kb on + strand, within DZA65_RS03320at 704.102 kb on - strand, within DZA65_RS03320at 704.128 kb on - strand, within DZA65_RS03320at 704.309 kb on + strandat 704.309 kb on + strandat 704.310 kb on - strandat 704.364 kb on + strandat 704.373 kb on + strandat 704.374 kb on - strandat 704.377 kb on + strandat 704.397 kb on + strandat 704.398 kb on - strandat 704.437 kb on + strandat 704.437 kb on + strandat 704.438 kb on - strandat 704.438 kb on - strandat 704.438 kb on - strandat 704.438 kb on - strandat 704.438 kb on - strandat 704.476 kb on + strandat 704.476 kb on + strandat 704.477 kb on - strandat 704.480 kb on + strandat 704.480 kb on + strandat 704.481 kb on - strandat 704.481 kb on - strandat 704.483 kb on + strandat 704.483 kb on + strandat 704.484 kb on - strandat 704.539 kb on + strand, within DZA65_RS03325at 704.540 kb on - strand, within DZA65_RS03325at 704.658 kb on - strand, within DZA65_RS03325at 704.713 kb on - strand, within DZA65_RS03325at 704.769 kb on + strand, within DZA65_RS03325at 704.817 kb on - strand, within DZA65_RS03325at 704.882 kb on + strand, within DZA65_RS03325at 704.883 kb on - strand, within DZA65_RS03325at 704.884 kb on + strand, within DZA65_RS03325at 704.885 kb on - strand, within DZA65_RS03325at 704.949 kb on - strand, within DZA65_RS03325at 705.064 kb on - strand, within DZA65_RS03325at 705.226 kb on - strand, within DZA65_RS03325at 705.374 kb on + strand, within DZA65_RS03325at 705.452 kb on + strand, within DZA65_RS03325at 705.493 kb on + strand, within DZA65_RS03325at 705.511 kb on + strandat 705.512 kb on - strandat 705.542 kb on + strandat 705.542 kb on + strandat 705.543 kb on - strandat 705.543 kb on - strandat 705.549 kb on + strandat 705.578 kb on + strandat 705.584 kb on + strandat 705.785 kb on - strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.800 kb on - strand, within DZA65_RS03330at 705.841 kb on - strand, within DZA65_RS03330at 705.844 kb on + strand, within DZA65_RS03330at 705.845 kb on - strand, within DZA65_RS03330at 705.847 kb on - strand, within DZA65_RS03330at 705.847 kb on - strand, within DZA65_RS03330at 705.913 kb on - strand, within DZA65_RS03330at 705.918 kb on + strand, within DZA65_RS03330at 705.919 kb on - strand, within DZA65_RS03330at 705.919 kb on - strand, within DZA65_RS03330at 705.940 kb on + strand, within DZA65_RS03330at 705.956 kb on - strand, within DZA65_RS03330at 706.039 kb on + strand, within DZA65_RS03330at 706.097 kb on - strand, within DZA65_RS03330at 706.138 kb on + strand, within DZA65_RS03330at 706.219 kb on + strand, within DZA65_RS03330at 706.221 kb on + strand, within DZA65_RS03330at 706.222 kb on - strand, within DZA65_RS03330at 706.222 kb on - strand, within DZA65_RS03330at 706.226 kb on - strand, within DZA65_RS03330at 706.226 kb on - strand, within DZA65_RS03330at 706.226 kb on - strand, within DZA65_RS03330at 706.231 kb on + strand, within DZA65_RS03330at 706.279 kb on + strand, within DZA65_RS03330at 706.298 kb on - strand, within DZA65_RS03330at 706.345 kb on + strand, within DZA65_RS03330at 706.346 kb on - strand, within DZA65_RS03330at 706.392 kb on + strand, within DZA65_RS03330at 706.415 kb on - strand, within DZA65_RS03330at 706.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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703,465 - -0.8
703,492 - +0.4
703,493 + +0.7
703,493 + +0.9
703,493 + +0.2
703,495 + +0.5
703,495 + -0.2
703,495 + +0.8
703,495 + -0.6
703,495 + +1.3
703,495 + -1.6
703,495 + +0.9
703,495 + -0.0
703,496 - -0.4
703,496 - +0.8
703,496 - +1.7
703,548 + +0.8
703,549 - +0.8
703,557 + -0.6
703,557 + +0.0
703,557 + +2.2
703,557 + -0.4
703,557 + -0.1
703,557 + +0.4
703,557 + +0.5
703,557 + -1.8
703,558 - -2.2
703,558 - +0.4
703,624 + DZA65_RS03320 0.11 +1.7
703,625 - DZA65_RS03320 0.11 -0.5
703,625 - DZA65_RS03320 0.11 -0.2
703,625 - DZA65_RS03320 0.11 +2.5
703,700 - DZA65_RS03320 0.22 -1.6
703,759 + DZA65_RS03320 0.30 +1.2
703,759 + DZA65_RS03320 0.30 -0.4
704,023 + DZA65_RS03320 0.66 +1.2
704,024 - DZA65_RS03320 0.66 +0.2
704,024 - DZA65_RS03320 0.66 +0.6
704,062 + DZA65_RS03320 0.71 +0.2
704,101 + DZA65_RS03320 0.77 -0.5
704,102 - DZA65_RS03320 0.77 +0.3
704,128 - DZA65_RS03320 0.81 +0.2
704,309 + +1.2
704,309 + -0.3
704,310 - +0.1
704,364 + +0.2
704,373 + +0.4
704,374 - -0.6
704,377 + -0.4
704,397 + -0.6
704,398 - -0.4
704,437 + -1.4
704,437 + +0.2
704,438 - +1.2
704,438 - +0.4
704,438 - +0.7
704,438 - -0.8
704,438 - +0.2
704,476 + -1.6
704,476 + -0.2
704,477 - -0.6
704,480 + -0.6
704,480 + -1.0
704,481 - -0.6
704,481 - -0.0
704,483 + +0.2
704,483 + +1.6
704,484 - -0.6
704,539 + DZA65_RS03325 0.12 +0.5
704,540 - DZA65_RS03325 0.12 +0.2
704,658 - DZA65_RS03325 0.22 -0.3
704,713 - DZA65_RS03325 0.26 -0.8
704,769 + DZA65_RS03325 0.31 +0.2
704,817 - DZA65_RS03325 0.34 -0.2
704,882 + DZA65_RS03325 0.40 +0.4
704,883 - DZA65_RS03325 0.40 +0.6
704,884 + DZA65_RS03325 0.40 +0.5
704,885 - DZA65_RS03325 0.40 +0.4
704,949 - DZA65_RS03325 0.45 -0.3
705,064 - DZA65_RS03325 0.54 +1.9
705,226 - DZA65_RS03325 0.67 +0.7
705,374 + DZA65_RS03325 0.79 -0.4
705,452 + DZA65_RS03325 0.86 +1.5
705,493 + DZA65_RS03325 0.89 -0.8
705,511 + +1.2
705,512 - +0.2
705,542 + +0.8
705,542 + +0.4
705,543 - +0.2
705,543 - +0.0
705,549 + +0.2
705,578 + -0.4
705,584 + -1.4
705,785 - DZA65_RS03330 0.17 +0.4
705,799 + DZA65_RS03330 0.18 -0.8
705,799 + DZA65_RS03330 0.18 +0.2
705,799 + DZA65_RS03330 0.18 -0.1
705,799 + DZA65_RS03330 0.18 +0.1
705,800 - DZA65_RS03330 0.18 +0.2
705,841 - DZA65_RS03330 0.23 +0.4
705,844 + DZA65_RS03330 0.23 +0.1
705,845 - DZA65_RS03330 0.23 -0.8
705,847 - DZA65_RS03330 0.23 -0.8
705,847 - DZA65_RS03330 0.23 +0.7
705,913 - DZA65_RS03330 0.30 +0.3
705,918 + DZA65_RS03330 0.31 -0.4
705,919 - DZA65_RS03330 0.31 -0.1
705,919 - DZA65_RS03330 0.31 -0.4
705,940 + DZA65_RS03330 0.33 +0.2
705,956 - DZA65_RS03330 0.35 +0.7
706,039 + DZA65_RS03330 0.44 +1.7
706,097 - DZA65_RS03330 0.50 -0.2
706,138 + DZA65_RS03330 0.54 -0.3
706,219 + DZA65_RS03330 0.63 +0.7
706,221 + DZA65_RS03330 0.63 +0.3
706,222 - DZA65_RS03330 0.63 -1.6
706,222 - DZA65_RS03330 0.63 +0.3
706,226 - DZA65_RS03330 0.64 -0.8
706,226 - DZA65_RS03330 0.64 +0.2
706,226 - DZA65_RS03330 0.64 +1.6
706,231 + DZA65_RS03330 0.64 +0.5
706,279 + DZA65_RS03330 0.69 +0.5
706,298 - DZA65_RS03330 0.71 -0.7
706,345 + DZA65_RS03330 0.77 -1.6
706,346 - DZA65_RS03330 0.77 -0.3
706,392 + DZA65_RS03330 0.82 +1.3
706,415 - DZA65_RS03330 0.84 +1.2
706,507 - -1.0

Or see this region's nucleotide sequence