Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22985

Experiment: M9+sucrose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDZA65_RS19420 and DZA65_RS22985 are separated by 68 nucleotidesDZA65_RS22985 and DZA65_RS19430 are separated by 118 nucleotidesDZA65_RS19430 and DZA65_RS19435 are separated by 184 nucleotides DZA65_RS19420: DZA65_RS19420 - bifunctional riboflavin kinase/FAD synthetase, at 4,201,987 to 4,202,928 _RS19420 DZA65_RS22985: DZA65_RS22985 - hypothetical protein, at 4,202,997 to 4,203,206 _RS22985 DZA65_RS19430: DZA65_RS19430 - 30S ribosomal protein S20, at 4,203,325 to 4,203,588 _RS19430 DZA65_RS19435: DZA65_RS19435 - Na+/H+ antiporter NhaA, at 4,203,773 to 4,204,948 _RS19435 Position (kb) 4202 4203 4204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4202.929 kb on - strandat 4202.929 kb on - strandat 4202.963 kb on - strandat 4202.963 kb on - strandat 4202.963 kb on - strandat 4202.963 kb on - strandat 4202.963 kb on - strandat 4202.969 kb on + strandat 4202.970 kb on - strandat 4203.054 kb on + strand, within DZA65_RS22985at 4203.055 kb on - strand, within DZA65_RS22985at 4203.057 kb on - strand, within DZA65_RS22985at 4203.131 kb on - strand, within DZA65_RS22985at 4203.143 kb on + strand, within DZA65_RS22985at 4203.711 kb on - strandat 4203.714 kb on - strandat 4203.742 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
remove
4,202,929 - +0.2
4,202,929 - -0.8
4,202,963 - +2.8
4,202,963 - -0.2
4,202,963 - -2.5
4,202,963 - +0.0
4,202,963 - -0.1
4,202,969 + -0.6
4,202,970 - +1.0
4,203,054 + DZA65_RS22985 0.27 -0.2
4,203,055 - DZA65_RS22985 0.28 -1.3
4,203,057 - DZA65_RS22985 0.29 -1.1
4,203,131 - DZA65_RS22985 0.64 -0.5
4,203,143 + DZA65_RS22985 0.70 -1.2
4,203,711 - +1.4
4,203,714 - +0.8
4,203,742 - -3.0

Or see this region's nucleotide sequence