Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19580

Experiment: M9+sucrose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19575 and DZA65_RS19580 are separated by 67 nucleotidesDZA65_RS19580 and DZA65_RS19585 are separated by 323 nucleotides DZA65_RS19575: DZA65_RS19575 - phosphoglycerate kinase, at 4,238,468 to 4,239,631 _RS19575 DZA65_RS19580: DZA65_RS19580 - erythrose-4-phosphate dehydrogenase, at 4,239,699 to 4,240,715 _RS19580 DZA65_RS19585: DZA65_RS19585 - transketolase, at 4,241,039 to 4,243,033 _RS19585 Position (kb) 4239 4240 4241Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4239.055 kb on + strand, within DZA65_RS19575at 4239.658 kb on - strandat 4239.732 kb on - strandat 4239.732 kb on - strandat 4239.732 kb on - strandat 4239.732 kb on - strandat 4239.837 kb on - strand, within DZA65_RS19580at 4239.883 kb on + strand, within DZA65_RS19580at 4239.883 kb on + strand, within DZA65_RS19580at 4239.883 kb on + strand, within DZA65_RS19580at 4239.883 kb on + strand, within DZA65_RS19580at 4239.883 kb on + strand, within DZA65_RS19580at 4239.883 kb on + strand, within DZA65_RS19580at 4239.884 kb on - strand, within DZA65_RS19580at 4239.884 kb on - strand, within DZA65_RS19580at 4239.884 kb on - strand, within DZA65_RS19580at 4239.884 kb on - strand, within DZA65_RS19580at 4239.884 kb on - strand, within DZA65_RS19580at 4239.891 kb on + strand, within DZA65_RS19580at 4239.892 kb on - strand, within DZA65_RS19580at 4239.892 kb on - strand, within DZA65_RS19580at 4239.892 kb on - strand, within DZA65_RS19580at 4239.892 kb on - strand, within DZA65_RS19580at 4239.893 kb on + strand, within DZA65_RS19580at 4239.893 kb on + strand, within DZA65_RS19580at 4239.894 kb on - strand, within DZA65_RS19580at 4239.894 kb on - strand, within DZA65_RS19580at 4239.905 kb on + strand, within DZA65_RS19580at 4239.905 kb on + strand, within DZA65_RS19580at 4239.946 kb on - strand, within DZA65_RS19580at 4239.995 kb on + strand, within DZA65_RS19580at 4239.995 kb on + strand, within DZA65_RS19580at 4239.996 kb on - strand, within DZA65_RS19580at 4240.062 kb on - strand, within DZA65_RS19580at 4240.062 kb on - strand, within DZA65_RS19580at 4240.121 kb on + strand, within DZA65_RS19580at 4240.121 kb on + strand, within DZA65_RS19580at 4240.121 kb on + strand, within DZA65_RS19580at 4240.122 kb on - strand, within DZA65_RS19580at 4240.135 kb on + strand, within DZA65_RS19580at 4240.136 kb on - strand, within DZA65_RS19580at 4240.205 kb on - strand, within DZA65_RS19580at 4240.227 kb on - strand, within DZA65_RS19580at 4240.235 kb on + strand, within DZA65_RS19580at 4240.235 kb on + strand, within DZA65_RS19580at 4240.408 kb on + strand, within DZA65_RS19580at 4240.408 kb on + strand, within DZA65_RS19580at 4240.409 kb on - strand, within DZA65_RS19580at 4240.409 kb on - strand, within DZA65_RS19580at 4240.409 kb on - strand, within DZA65_RS19580at 4240.410 kb on + strand, within DZA65_RS19580at 4240.410 kb on + strand, within DZA65_RS19580at 4240.410 kb on + strand, within DZA65_RS19580at 4240.410 kb on + strand, within DZA65_RS19580at 4240.411 kb on - strand, within DZA65_RS19580at 4240.411 kb on - strand, within DZA65_RS19580at 4240.411 kb on - strand, within DZA65_RS19580at 4240.494 kb on - strand, within DZA65_RS19580at 4240.507 kb on - strand, within DZA65_RS19580at 4240.567 kb on + strand, within DZA65_RS19580at 4240.568 kb on - strand, within DZA65_RS19580at 4240.568 kb on - strand, within DZA65_RS19580at 4240.568 kb on - strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.571 kb on + strand, within DZA65_RS19580at 4240.572 kb on - strand, within DZA65_RS19580at 4240.572 kb on - strand, within DZA65_RS19580at 4240.572 kb on - strandat 4240.572 kb on - strand, within DZA65_RS19580at 4240.651 kb on + strandat 4240.651 kb on + strandat 4240.652 kb on - strandat 4240.652 kb on - strandat 4240.666 kb on - strandat 4240.671 kb on - strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.677 kb on + strandat 4240.678 kb on - strandat 4240.678 kb on - strandat 4240.678 kb on - strandat 4240.729 kb on + strandat 4240.729 kb on + strandat 4240.730 kb on - strandat 4240.730 kb on - strandat 4240.736 kb on - strandat 4240.751 kb on + strandat 4240.752 kb on - strandat 4240.757 kb on - strandat 4240.763 kb on + strandat 4240.763 kb on + strandat 4240.763 kb on + strandat 4240.763 kb on + strandat 4240.764 kb on - strandat 4240.764 kb on - strandat 4240.778 kb on - strandat 4240.778 kb on - strandat 4240.828 kb on + strandat 4240.828 kb on + strandat 4240.947 kb on + strandat 4241.023 kb on + strandat 4241.024 kb on - strandat 4241.040 kb on + strandat 4241.041 kb on - strandat 4241.041 kb on - strandat 4241.041 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+sucrose
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4,239,055 + DZA65_RS19575 0.50 +1.8
4,239,658 - -1.3
4,239,732 - +0.1
4,239,732 - +0.3
4,239,732 - -1.5
4,239,732 - -0.2
4,239,837 - DZA65_RS19580 0.14 +0.6
4,239,883 + DZA65_RS19580 0.18 -2.6
4,239,883 + DZA65_RS19580 0.18 -1.8
4,239,883 + DZA65_RS19580 0.18 -0.8
4,239,883 + DZA65_RS19580 0.18 -0.8
4,239,883 + DZA65_RS19580 0.18 -3.0
4,239,883 + DZA65_RS19580 0.18 -2.5
4,239,884 - DZA65_RS19580 0.18 -0.2
4,239,884 - DZA65_RS19580 0.18 -0.2
4,239,884 - DZA65_RS19580 0.18 +0.4
4,239,884 - DZA65_RS19580 0.18 -2.3
4,239,884 - DZA65_RS19580 0.18 +0.6
4,239,891 + DZA65_RS19580 0.19 -1.2
4,239,892 - DZA65_RS19580 0.19 -1.2
4,239,892 - DZA65_RS19580 0.19 +0.4
4,239,892 - DZA65_RS19580 0.19 -1.3
4,239,892 - DZA65_RS19580 0.19 +2.4
4,239,893 + DZA65_RS19580 0.19 -2.0
4,239,893 + DZA65_RS19580 0.19 -2.0
4,239,894 - DZA65_RS19580 0.19 -0.8
4,239,894 - DZA65_RS19580 0.19 +0.8
4,239,905 + DZA65_RS19580 0.20 -0.6
4,239,905 + DZA65_RS19580 0.20 -0.3
4,239,946 - DZA65_RS19580 0.24 -0.5
4,239,995 + DZA65_RS19580 0.29 -2.3
4,239,995 + DZA65_RS19580 0.29 -0.2
4,239,996 - DZA65_RS19580 0.29 -0.0
4,240,062 - DZA65_RS19580 0.36 -1.5
4,240,062 - DZA65_RS19580 0.36 -1.2
4,240,121 + DZA65_RS19580 0.41 -0.5
4,240,121 + DZA65_RS19580 0.41 -1.8
4,240,121 + DZA65_RS19580 0.41 +1.5
4,240,122 - DZA65_RS19580 0.42 +0.3
4,240,135 + DZA65_RS19580 0.43 +0.8
4,240,136 - DZA65_RS19580 0.43 +0.4
4,240,205 - DZA65_RS19580 0.50 +0.8
4,240,227 - DZA65_RS19580 0.52 +1.8
4,240,235 + DZA65_RS19580 0.53 -0.8
4,240,235 + DZA65_RS19580 0.53 -2.0
4,240,408 + DZA65_RS19580 0.70 -0.5
4,240,408 + DZA65_RS19580 0.70 -2.2
4,240,409 - DZA65_RS19580 0.70 -0.8
4,240,409 - DZA65_RS19580 0.70 -0.6
4,240,409 - DZA65_RS19580 0.70 +0.8
4,240,410 + DZA65_RS19580 0.70 -1.2
4,240,410 + DZA65_RS19580 0.70 -1.2
4,240,410 + DZA65_RS19580 0.70 -0.0
4,240,410 + DZA65_RS19580 0.70 -0.9
4,240,411 - DZA65_RS19580 0.70 +0.8
4,240,411 - DZA65_RS19580 0.70 -0.1
4,240,411 - DZA65_RS19580 0.70 -0.2
4,240,494 - DZA65_RS19580 0.78 -1.6
4,240,507 - DZA65_RS19580 0.79 -0.7
4,240,567 + DZA65_RS19580 0.85 -0.6
4,240,568 - DZA65_RS19580 0.85 -1.2
4,240,568 - DZA65_RS19580 0.85 +0.2
4,240,568 - DZA65_RS19580 0.85 -2.6
4,240,571 + DZA65_RS19580 0.86 -0.2
4,240,571 + DZA65_RS19580 0.86 -0.0
4,240,571 + DZA65_RS19580 0.86 -0.5
4,240,571 + DZA65_RS19580 0.86 -0.5
4,240,571 + DZA65_RS19580 0.86 -0.2
4,240,571 + DZA65_RS19580 0.86 +0.8
4,240,571 + DZA65_RS19580 0.86 -1.3
4,240,571 + DZA65_RS19580 0.86 -1.0
4,240,571 + DZA65_RS19580 0.86 -0.3
4,240,572 - DZA65_RS19580 0.86 -0.2
4,240,572 - DZA65_RS19580 0.86 +1.2
4,240,572 - +0.1
4,240,572 - DZA65_RS19580 0.86 -2.0
4,240,651 + +1.4
4,240,651 + -2.0
4,240,652 - +1.8
4,240,652 - +0.1
4,240,666 - +0.2
4,240,671 - -0.4
4,240,677 + -0.2
4,240,677 + -2.6
4,240,677 + -1.5
4,240,677 + -2.3
4,240,677 + -0.6
4,240,677 + -0.9
4,240,677 + -0.6
4,240,677 + -2.0
4,240,677 + -0.6
4,240,678 - +1.8
4,240,678 - -1.0
4,240,678 - -0.5
4,240,729 + -1.8
4,240,729 + -1.8
4,240,730 - -2.3
4,240,730 - -0.2
4,240,736 - -1.0
4,240,751 + -0.8
4,240,752 - -1.3
4,240,757 - +3.2
4,240,763 + -0.3
4,240,763 + -0.2
4,240,763 + -2.0
4,240,763 + -1.5
4,240,764 - -0.5
4,240,764 - +0.9
4,240,778 - +0.2
4,240,778 - +0.1
4,240,828 + -0.4
4,240,828 + -0.5
4,240,947 + -1.2
4,241,023 + +0.1
4,241,024 - -0.6
4,241,040 + -2.0
4,241,041 - +0.5
4,241,041 - -1.0
4,241,041 - +0.1

Or see this region's nucleotide sequence