Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22445

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
4,854,808	-		DZA65_RS22435	0.85	-0.4
4,854,821	-		DZA65_RS22435	0.86	-0.7
4,854,821	-		DZA65_RS22435	0.86	+0.4
4,854,821	-		DZA65_RS22435	0.86	+0.4
4,854,825	+		DZA65_RS22435	0.87	+1.0
4,854,825	+		DZA65_RS22435	0.87	+1.1
4,854,825	+		DZA65_RS22435	0.87	+0.3
4,854,826	-		DZA65_RS22435	0.87	+0.6
4,854,826	-		DZA65_RS22435	0.87	-0.5
4,854,826	-		DZA65_RS22435	0.87	-0.1
4,854,901	+				-1.5
4,854,901	+				+0.3
4,854,901	+				-0.2
4,854,901	+				-0.3
4,854,901	+				+0.6
4,854,902	-				-1.6
4,854,902	-				+0.6
4,854,902	-				+1.2
4,854,939	+				-1.4
4,854,939	+				-0.0
4,854,977	+				-0.6
4,854,991	+				-0.1
4,854,991	+				-0.0
4,855,006	-				-0.0
4,855,046	+				-1.2
4,855,046	+				+1.3
4,855,046	+				-0.5
4,855,046	+				-0.2
4,855,046	+				+0.1
4,855,046	+				+0.6
4,855,047	-				+0.3
4,855,047	-				+0.6
4,855,081	+				+2.1
4,855,235	-		DZA65_RS22440	0.28	-0.5
4,855,235	-		DZA65_RS22440	0.28	-1.1
4,855,296	-		DZA65_RS22440	0.36	-0.7
4,855,304	+		DZA65_RS22440	0.37	-0.1
4,855,304	+		DZA65_RS22440	0.37	-0.6
4,855,304	+		DZA65_RS22440	0.37	+0.6
4,855,305	-		DZA65_RS22440	0.37	+0.1
4,855,305	-		DZA65_RS22440	0.37	-0.0
4,855,305	-		DZA65_RS22440	0.37	+0.5
4,855,367	+		DZA65_RS22440	0.45	+0.4
4,855,367	+		DZA65_RS22440	0.45	-0.3
4,855,367	+		DZA65_RS22440	0.45	+0.9
4,855,367	+		DZA65_RS22440	0.45	+0.8
4,855,368	-		DZA65_RS22440	0.46	-0.6
4,855,368	-		DZA65_RS22440	0.46	-0.1
4,855,368	-		DZA65_RS22440	0.46	+0.6
4,855,368	-		DZA65_RS22440	0.46	-0.2
4,855,368	-		DZA65_RS22440	0.46	+0.1
4,855,539	+		DZA65_RS22440	0.69	+0.1
4,855,539	+		DZA65_RS22440	0.69	-0.6
4,855,539	+		DZA65_RS22440	0.69	+2.0
4,855,539	+		DZA65_RS22440	0.69	-0.7
4,855,540	-		DZA65_RS22440	0.69	+0.1
4,855,540	-		DZA65_RS22440	0.69	+1.4
4,855,540	-		DZA65_RS22440	0.69	+0.4
4,855,540	-		DZA65_RS22440	0.69	+0.9
4,855,540	-		DZA65_RS22440	0.69	+0.3
4,855,540	-		DZA65_RS22440	0.69	+0.2
4,855,540	-		DZA65_RS22440	0.69	-1.6
4,855,540	-		DZA65_RS22440	0.69	-0.5
4,855,579	-		DZA65_RS22440	0.74	+0.1
4,855,701	+				-0.4
4,855,701	+				+0.6
4,855,701	+				+0.9
4,855,701	+				-0.9
4,855,701	+				-0.9
4,855,701	+				-0.2
4,855,701	+				+0.5
4,855,702	-				-0.4
4,855,702	-				-0.4
4,855,702	-				-1.4
4,855,702	-				+0.6
4,855,702	-				-1.3
4,855,702	-				-1.2
4,855,702	-				-0.8
4,855,702	-				-1.6
4,855,702	-				-0.7
4,855,702	-				-0.4
4,855,702	-				-0.4
4,855,710	-				-0.4
4,855,710	-				+0.1
4,855,820	+				-2.7
4,855,820	+				-0.2
4,855,821	-				+3.0
4,855,821	-				+0.4
4,855,821	-				+1.5
4,855,821	-				-1.1
4,856,083	+		DZA65_RS22445	0.41	-0.2
4,856,083	+		DZA65_RS22445	0.41	-0.7
4,856,083	+		DZA65_RS22445	0.41	+0.0
4,856,083	+		DZA65_RS22445	0.41	+2.2
4,856,083	+		DZA65_RS22445	0.41	+1.2
4,856,083	+		DZA65_RS22445	0.41	+1.0
4,856,084	-		DZA65_RS22445	0.41	-0.2
4,856,084	-		DZA65_RS22445	0.41	-0.7
4,856,084	-		DZA65_RS22445	0.41	+0.5
4,856,084	-		DZA65_RS22445	0.41	+0.1
4,856,084	-		DZA65_RS22445	0.41	+0.8
4,856,138	+		DZA65_RS22445	0.48	+0.3
4,856,138	+		DZA65_RS22445	0.48	-0.4
4,856,138	+		DZA65_RS22445	0.48	+0.5
4,856,139	-		DZA65_RS22445	0.48	-0.9
4,856,139	-		DZA65_RS22445	0.48	-0.2
4,856,139	-		DZA65_RS22445	0.48	+1.9
4,856,182	+		DZA65_RS22445	0.53	+1.6
4,856,205	+		DZA65_RS22445	0.56	+0.3
4,856,205	+		DZA65_RS22445	0.56	-0.8
4,856,205	+		DZA65_RS22445	0.56	-0.4
4,856,205	+		DZA65_RS22445	0.56	-0.4
4,856,206	-		DZA65_RS22445	0.56	+0.1
4,856,206	-		DZA65_RS22445	0.56	-0.0
4,856,236	-		DZA65_RS22445	0.60	-0.4
4,856,331	-		DZA65_RS22445	0.72	+0.1
4,856,361	+		DZA65_RS22445	0.76	+1.2
4,856,362	-		DZA65_RS22445	0.76	+0.6
4,856,404	+		DZA65_RS22445	0.82	-0.4
4,856,405	-		DZA65_RS22445	0.82	+1.1
4,856,405	-		DZA65_RS22445	0.82	+0.1
4,856,433	+		DZA65_RS22445	0.85	+1.6
4,856,434	-		DZA65_RS22445	0.85	-0.4
4,856,434	-		DZA65_RS22445	0.85	+0.1
4,856,454	+		DZA65_RS22445	0.88	+1.6
4,856,454	+		DZA65_RS22445	0.88	-0.2
4,856,454	+		DZA65_RS22445	0.88	-1.4
4,856,454	+		DZA65_RS22445	0.88	+0.1
4,856,454	+		DZA65_RS22445	0.88	-0.7
4,856,454	+		DZA65_RS22445	0.88	-0.7
4,856,455	-		DZA65_RS22445	0.88	-0.7
4,856,455	-		DZA65_RS22445	0.88	-1.4
4,856,455	-		DZA65_RS22445	0.88	+0.7
4,856,455	-		DZA65_RS22445	0.88	+0.2
4,856,455	-		DZA65_RS22445	0.88	+0.2
4,856,455	-		DZA65_RS22445	0.88	-2.7
4,856,472	+				+0.3
4,856,472	+				+0.2
4,856,472	+				-0.1
4,856,472	+				+0.1
4,856,472	+				+0.1
4,856,472	+				+0.8
4,856,472	+				+0.6
4,856,472	+				-1.5
4,856,473	-				+0.1
4,856,473	-				+0.5
4,856,473	-				-0.5
4,856,473	-				-0.4
4,856,473	-				-1.2
4,856,473	-				-0.8
4,856,473	-				-1.9
4,856,473	-				-0.3
4,856,473	-				+0.1
4,856,473	-				-1.7
4,856,475	-				+0.8
4,856,548	+				+0.6
4,856,549	-				+0.2
4,856,557	+				+0.3
4,856,557	+				-1.1
4,856,574	-				+0.3
4,856,574	-				-0.8
4,856,580	+				+0.0
4,856,581	-				+1.3
4,856,744	-		DZA65_RS22450	0.61	-0.9
4,856,744	-		DZA65_RS22450	0.61	-1.5
4,856,744	-		DZA65_RS22450	0.61	+1.4
4,856,820	+		DZA65_RS22450	0.90	+0.8
4,856,820	+		DZA65_RS22450	0.90	-2.2
4,856,820	+		DZA65_RS22450	0.90	+0.3
4,856,820	+		DZA65_RS22450	0.90	+1.5
4,856,820	+		DZA65_RS22450	0.90	+0.2
4,856,820	+		DZA65_RS22450	0.90	-0.4
4,856,820	+				+1.2
4,856,820	+		DZA65_RS22450	0.90	+0.6
4,856,820	+		DZA65_RS22450	0.90	+0.2
4,856,820	+		DZA65_RS22450	0.90	+0.6
4,856,820	+		DZA65_RS22450	0.90	+0.6
4,856,821	-				-1.2
4,856,821	-				-1.2
4,856,821	-				-1.5
4,856,821	-				+0.2
4,856,821	-				+0.6
4,856,821	-				+1.4
4,856,821	-				+0.6
4,856,821	-				+0.4
4,856,821	-				-0.2
4,856,821	-				-0.8
4,856,821	-				+0.6
4,856,963	+		DZA65_RS22455	0.36	+0.1
4,856,963	+		DZA65_RS22455	0.36	-1.5
4,856,963	+		DZA65_RS22455	0.36	-0.6
4,856,963	+		DZA65_RS22455	0.36	-0.0
4,856,964	-		DZA65_RS22455	0.37	-1.7
4,856,964	-		DZA65_RS22455	0.37	+0.1
4,856,964	-		DZA65_RS22455	0.37	+0.3
4,856,964	-		DZA65_RS22455	0.37	-1.4
4,856,964	-		DZA65_RS22455	0.37	+0.2
4,856,964	-		DZA65_RS22455	0.37	+2.0
4,856,964	-		DZA65_RS22455	0.37	+0.6
4,856,964	-		DZA65_RS22455	0.37	+0.2
4,856,964	-		DZA65_RS22455	0.37	+0.5
4,857,068	-		DZA65_RS22455	0.78	-0.5
4,857,122	+				-0.5
4,857,122	+				-0.9
4,857,122	+				+1.2
4,857,123	-				-0.1
4,857,123	-				+1.3
4,857,209	+		DZA65_RS22460	0.17	+0.4
4,857,209	+		DZA65_RS22460	0.17	-2.9
4,857,210	-		DZA65_RS22460	0.17	-0.3
4,857,210	-		DZA65_RS22460	0.17	-1.5
4,857,212	+		DZA65_RS22460	0.17	+0.8
4,857,212	+		DZA65_RS22460	0.17	-0.1
4,857,212	+		DZA65_RS22460	0.17	+0.9
4,857,212	+		DZA65_RS22460	0.17	+0.2
4,857,212	+		DZA65_RS22460	0.17	+0.4
4,857,213	-		DZA65_RS22460	0.17	+0.2
4,857,213	-		DZA65_RS22460	0.17	-0.3
4,857,213	-		DZA65_RS22460	0.17	-0.2
4,857,213	-		DZA65_RS22460	0.17	-2.4
4,857,213	-		DZA65_RS22460	0.17	-0.5
4,857,213	-		DZA65_RS22460	0.17	+0.6
4,857,213	-		DZA65_RS22460	0.17	+1.8
4,857,213	-		DZA65_RS22460	0.17	+0.5
4,857,213	-		DZA65_RS22460	0.17	-0.4
4,857,235	+		DZA65_RS22460	0.21	-0.4
4,857,236	-		DZA65_RS22460	0.21	+1.1
4,857,467	+		DZA65_RS22460	0.60	+0.6
4,857,467	+		DZA65_RS22460	0.60	-0.3
4,857,467	+		DZA65_RS22460	0.60	-0.5
4,857,468	-		DZA65_RS22460	0.60	-0.9
4,857,468	-		DZA65_RS22460	0.60	+0.0
4,857,513	+		DZA65_RS22460	0.68	-0.0
4,857,514	-		DZA65_RS22460	0.68	+0.3