Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15445

Experiment: M9+sucrose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+sucrose
3,348,123	-				-0.6
3,348,132	+				-0.7
3,348,299	+		DZA65_RS15440	0.15	-0.3
3,348,299	+		DZA65_RS15440	0.15	-1.5
3,348,300	-		DZA65_RS15440	0.15	-1.3
3,348,330	+		DZA65_RS15440	0.19	-1.4
3,348,330	+				+0.4
3,348,331	-		DZA65_RS15440	0.19	+0.7
3,348,498	-		DZA65_RS15440	0.37	-0.5
3,348,538	+		DZA65_RS15440	0.41	+0.2
3,348,539	-		DZA65_RS15440	0.42	-1.0
3,348,539	-		DZA65_RS15440	0.42	-1.2
3,348,571	+		DZA65_RS15440	0.45	+1.2
3,348,572	-		DZA65_RS15440	0.45	+2.0
3,348,736	+		DZA65_RS15440	0.63	+0.1
3,348,736	+		DZA65_RS15440	0.63	+0.4
3,348,736	+		DZA65_RS15440	0.63	+0.7
3,348,736	+		DZA65_RS15440	0.63	-1.2
3,348,736	+		DZA65_RS15440	0.63	+0.0
3,348,737	-		DZA65_RS15440	0.63	+0.2
3,348,738	+		DZA65_RS15440	0.63	+0.5
3,348,739	-		DZA65_RS15440	0.63	+1.2
3,348,762	+		DZA65_RS15440	0.66	+1.2
3,348,780	+		DZA65_RS15440	0.68	-0.9
3,348,781	-		DZA65_RS15440	0.68	-0.4
3,348,781	-		DZA65_RS15440	0.68	+1.0
3,348,781	-		DZA65_RS15440	0.68	-1.9
3,348,815	+		DZA65_RS15440	0.72	+0.5
3,348,815	+		DZA65_RS15440	0.72	-0.1
3,348,815	+		DZA65_RS15440	0.72	-0.4
3,348,816	-		DZA65_RS15440	0.72	-0.4
3,348,816	-		DZA65_RS15440	0.72	-0.4
3,348,816	-		DZA65_RS15440	0.72	-0.0
3,348,816	-		DZA65_RS15440	0.72	+0.3
3,348,827	+		DZA65_RS15440	0.73	+1.0
3,348,827	+		DZA65_RS15440	0.73	+0.1
3,348,827	+		DZA65_RS15440	0.73	-1.0
3,348,828	-		DZA65_RS15440	0.73	-0.3
3,348,828	-		DZA65_RS15440	0.73	-1.8
3,348,845	+		DZA65_RS15440	0.75	+1.0
3,348,845	+		DZA65_RS15440	0.75	-2.0
3,348,845	+		DZA65_RS15440	0.75	+0.6
3,348,846	-		DZA65_RS15440	0.75	+0.9
3,348,846	-		DZA65_RS15440	0.75	-0.2
3,348,846	-		DZA65_RS15440	0.75	-0.4
3,348,883	+		DZA65_RS15440	0.79	+1.5
3,348,883	+		DZA65_RS15440	0.79	+2.2
3,348,884	-		DZA65_RS15440	0.79	-0.1
3,348,898	+		DZA65_RS15440	0.81	+0.8
3,348,898	+		DZA65_RS15440	0.81	+0.6
3,348,898	+		DZA65_RS15440	0.81	-0.4
3,348,898	+				+2.0
3,348,899	-		DZA65_RS15440	0.81	-1.2
3,348,899	-		DZA65_RS15440	0.81	-0.5
3,348,899	-		DZA65_RS15440	0.81	+1.0
3,348,899	-		DZA65_RS15440	0.81	-0.3
3,348,899	-		DZA65_RS15440	0.81	-0.8
3,348,901	-		DZA65_RS15440	0.81	-0.6
3,348,958	+		DZA65_RS15440	0.88	+1.4
3,348,958	+		DZA65_RS15440	0.88	+1.0
3,348,958	+		DZA65_RS15440	0.88	-0.6
3,348,958	+		DZA65_RS15440	0.88	+0.5
3,348,959	-		DZA65_RS15440	0.88	-1.0
3,348,961	+		DZA65_RS15440	0.88	+1.0
3,348,961	+		DZA65_RS15440	0.88	-0.4
3,348,961	+		DZA65_RS15440	0.88	-0.4
3,348,961	+		DZA65_RS15440	0.88	+0.7
3,348,961	+		DZA65_RS15440	0.88	+0.6
3,348,961	+		DZA65_RS15440	0.88	+1.0
3,348,962	-		DZA65_RS15440	0.88	+0.0
3,348,962	-		DZA65_RS15440	0.88	+0.0
3,348,962	-		DZA65_RS15440	0.88	-0.4
3,348,962	-		DZA65_RS15440	0.88	-0.1
3,348,962	-		DZA65_RS15440	0.88	-2.0
3,348,962	-		DZA65_RS15440	0.88	-0.6
3,348,962	-		DZA65_RS15440	0.88	-1.9
3,348,962	-		DZA65_RS15440	0.88	+0.8
3,348,962	-		DZA65_RS15440	0.88	+0.6
3,348,965	+		DZA65_RS15440	0.88	-1.1
3,348,965	+		DZA65_RS15440	0.88	+0.9
3,348,966	-		DZA65_RS15440	0.88	-0.1
3,349,069	+				-2.0
3,349,069	+				-0.3
3,349,069	+				-1.1
3,349,069	+				-2.7
3,349,069	+				+1.2
3,349,069	+				-0.5
3,349,069	+				-0.2
3,349,069	+				-0.2
3,349,070	-				+1.0
3,349,070	-				+1.8
3,349,074	+				-1.0
3,349,074	+				-0.4
3,349,074	+				+0.2
3,349,074	+				-0.4
3,349,074	+				-1.0
3,349,074	+				-0.0
3,349,074	+				-0.7
3,349,074	+				-1.0
3,349,074	+				-1.0
3,349,074	+				+0.2
3,349,075	-				+0.1
3,349,075	-				-1.2
3,349,075	-				+0.2
3,349,075	-				-1.5
3,349,075	-				-1.4
3,349,075	-				-3.0
3,349,075	-				-1.8
3,349,075	-				+0.0
3,349,075	-				+1.0
3,349,075	-				-2.8
3,349,075	-				-1.3
3,349,078	+				-1.1
3,349,078	+				+0.6
3,349,078	+				-0.3
3,349,079	-				-0.4
3,349,142	+				+0.0
3,349,143	-				-1.0
3,349,241	-		DZA65_RS15445	0.43	-0.7
3,349,353	+		DZA65_RS15445	0.84	+0.0
3,349,353	+		DZA65_RS15445	0.84	-0.3
3,349,353	+		DZA65_RS15445	0.84	+0.0
3,349,353	+		DZA65_RS15445	0.84	-1.4
3,349,353	+		DZA65_RS15445	0.84	+0.5
3,349,353	+				-0.6
3,349,353	+		DZA65_RS15445	0.84	-0.3
3,349,353	+		DZA65_RS15445	0.84	-0.6
3,349,354	-		DZA65_RS15445	0.84	+0.4
3,349,354	-		DZA65_RS15445	0.84	-1.0
3,349,354	-		DZA65_RS15445	0.84	-2.4
3,349,451	-				-0.2
3,349,487	-				-0.8
3,349,509	-		DZA65_RS15450	0.13	+0.0
3,349,546	+		DZA65_RS15450	0.20	-1.4
3,349,546	+		DZA65_RS15450	0.20	-0.3
3,349,546	+		DZA65_RS15450	0.20	-0.7
3,349,546	+		DZA65_RS15450	0.20	-0.5
3,349,546	+		DZA65_RS15450	0.20	+0.0
3,349,546	+		DZA65_RS15450	0.20	-0.6
3,349,546	+		DZA65_RS15450	0.20	-0.6
3,349,546	+		DZA65_RS15450	0.20	+0.5
3,349,547	-		DZA65_RS15450	0.20	-0.5
3,349,547	-		DZA65_RS15450	0.20	+0.5
3,349,547	-		DZA65_RS15450	0.20	-1.0
3,349,632	-		DZA65_RS15450	0.35	+0.4
3,349,632	-		DZA65_RS15450	0.35	+0.7
3,349,632	-		DZA65_RS15450	0.35	+0.0
3,349,738	+		DZA65_RS15450	0.54	-0.1
3,349,738	+		DZA65_RS15450	0.54	-1.5
3,349,819	+		DZA65_RS15450	0.68	-0.3
3,349,820	-		DZA65_RS15450	0.68	-0.7
3,349,820	-		DZA65_RS15450	0.68	+0.0
3,349,850	-		DZA65_RS15450	0.74	-0.2
3,349,876	+		DZA65_RS15450	0.78	+0.3
3,349,877	-		DZA65_RS15450	0.79	+0.0
3,349,877	-		DZA65_RS15450	0.79	-0.4
3,349,877	-		DZA65_RS15450	0.79	-3.0
3,349,877	-		DZA65_RS15450	0.79	-0.3
3,349,880	+		DZA65_RS15450	0.79	-1.2
3,349,881	-		DZA65_RS15450	0.79	-0.3
3,349,881	-		DZA65_RS15450	0.79	-1.0
3,349,881	-		DZA65_RS15450	0.79	+0.0
3,349,881	-		DZA65_RS15450	0.79	+0.2
3,349,916	-		DZA65_RS15450	0.85	-1.5
3,349,916	-		DZA65_RS15450	0.85	-0.4
3,349,960	+				+1.8
3,349,998	+				+0.0
3,349,999	-				-0.4
3,349,999	-				+0.8
3,349,999	-				+0.7
3,350,003	+				+0.0
3,350,003	+				-0.5
3,350,003	+				+0.3
3,350,003	+				-1.0
3,350,003	+				+0.3
3,350,003	+				-0.8
3,350,003	+				+0.8
3,350,003	+				+0.9
3,350,003	+				-0.5
3,350,004	-				-1.0
3,350,004	-				+1.6
3,350,004	-				-0.5
3,350,004	-				+0.8
3,350,004	-				+0.1
3,350,004	-				-1.0
3,350,004	-				+0.0
3,350,004	-				-2.0
3,350,187	-		DZA65_RS15455	0.24	-1.0
3,350,230	+		DZA65_RS15455	0.29	-0.8
3,350,236	+		DZA65_RS15455	0.30	-0.5
3,350,251	+		DZA65_RS15455	0.32	-0.5
3,350,252	-		DZA65_RS15455	0.32	-0.1
3,350,298	+		DZA65_RS15455	0.38	-1.4
3,350,298	+		DZA65_RS15455	0.38	+1.6
3,350,298	+		DZA65_RS15455	0.38	-0.2
3,350,298	+		DZA65_RS15455	0.38	+0.2
3,350,298	+		DZA65_RS15455	0.38	+0.0
3,350,298	+		DZA65_RS15455	0.38	+0.1
3,350,298	+		DZA65_RS15455	0.38	-0.3
3,350,298	+		DZA65_RS15455	0.38	-1.8
3,350,298	+		DZA65_RS15455	0.38	-1.0
3,350,299	-		DZA65_RS15455	0.38	-0.3
3,350,299	-		DZA65_RS15455	0.38	+2.5
3,350,299	-		DZA65_RS15455	0.38	-0.2
3,350,310	+		DZA65_RS15455	0.39	-1.5