Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21355

Experiment: M9+glucose+arginine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glucose+arginine
4,784,350	+		HER17_RS21350	0.41	-0.2
4,784,359	+		HER17_RS21350	0.42	+0.3
4,784,360	-		HER17_RS21350	0.42	-1.7
4,784,429	-		HER17_RS21350	0.46	+0.6
4,784,429	-		HER17_RS21350	0.46	+0.5
4,784,429	-		HER17_RS21350	0.46	+0.2
4,784,431	+		HER17_RS21350	0.46	-0.3
4,784,431	+		HER17_RS21350	0.46	-2.2
4,784,480	-		HER17_RS21350	0.49	-0.4
4,784,485	-		HER17_RS21350	0.50	-1.2
4,784,485	-		HER17_RS21350	0.50	-2.3
4,784,485	-		HER17_RS21350	0.50	-0.0
4,784,537	+		HER17_RS21350	0.53	+0.2
4,784,537	+		HER17_RS21350	0.53	+0.1
4,784,538	-		HER17_RS21350	0.53	+0.2
4,784,540	+		HER17_RS21350	0.53	+2.1
4,784,552	+		HER17_RS21350	0.54	-0.4
4,784,552	+		HER17_RS21350	0.54	+0.1
4,784,552	+		HER17_RS21350	0.54	+1.2
4,784,553	-		HER17_RS21350	0.54	-0.5
4,784,553	-		HER17_RS21350	0.54	+0.2
4,784,553	-		HER17_RS21350	0.54	+0.2
4,784,584	-		HER17_RS21350	0.56	+1.5
4,784,593	-		HER17_RS21350	0.56	+0.3
4,784,627	-		HER17_RS21350	0.59	+0.9
4,784,627	-		HER17_RS21350	0.59	-1.1
4,784,637	+		HER17_RS21350	0.59	+0.4
4,784,637	+		HER17_RS21350	0.59	+0.3
4,784,638	-		HER17_RS21350	0.59	-0.6
4,784,638	-		HER17_RS21350	0.59	+0.9
4,784,638	-		HER17_RS21350	0.59	-0.0
4,784,638	-		HER17_RS21350	0.59	+1.0
4,784,638	-		HER17_RS21350	0.59	+0.6
4,784,641	+		HER17_RS21350	0.59	+0.2
4,784,641	+		HER17_RS21350	0.59	-0.1
4,784,641	+		HER17_RS21350	0.59	-0.8
4,784,642	-		HER17_RS21350	0.59	-3.5
4,784,665	+		HER17_RS21350	0.61	+0.4
4,784,665	+		HER17_RS21350	0.61	+0.4
4,784,666	-		HER17_RS21350	0.61	-2.6
4,784,666	-		HER17_RS21350	0.61	-0.1
4,784,666	-		HER17_RS21350	0.61	-0.7
4,784,692	-		HER17_RS21350	0.63	-0.9
4,784,692	-		HER17_RS21350	0.63	-2.0
4,784,692	-		HER17_RS21350	0.63	-0.2
4,784,711	+		HER17_RS21350	0.64	-0.0
4,784,803	-		HER17_RS21350	0.69	+0.2
4,784,803	-		HER17_RS21350	0.69	+0.8
4,784,803	-		HER17_RS21350	0.69	-2.4
4,784,845	+		HER17_RS21350	0.72	-0.8
4,784,845	+		HER17_RS21350	0.72	-2.4
4,784,846	-		HER17_RS21350	0.72	-0.5
4,784,846	-		HER17_RS21350	0.72	+0.7
4,784,846	-		HER17_RS21350	0.72	+1.0
4,784,846	-		HER17_RS21350	0.72	+0.6
4,784,846	-		HER17_RS21350	0.72	+0.1
4,784,867	-		HER17_RS21350	0.73	+1.9
4,784,867	-		HER17_RS21350	0.73	-0.7
4,784,896	-		HER17_RS21350	0.75	-0.5
4,784,896	-		HER17_RS21350	0.75	+0.5
4,784,929	+		HER17_RS21350	0.77	-2.7
4,784,929	+		HER17_RS21350	0.77	-1.8
4,784,929	+		HER17_RS21350	0.77	+0.1
4,784,929	+		HER17_RS21350	0.77	-0.3
4,784,930	-		HER17_RS21350	0.77	+0.4
4,784,975	+		HER17_RS21350	0.80	-0.5
4,784,975	+		HER17_RS21350	0.80	-1.3
4,784,975	+		HER17_RS21350	0.80	+1.0
4,784,975	+		HER17_RS21350	0.80	+1.1
4,785,010	-		HER17_RS21350	0.82	-0.6
4,785,073	+		HER17_RS21350	0.86	-0.8
4,785,073	+		HER17_RS21350	0.86	-0.1
4,785,143	+				+0.1
4,785,144	-				+0.5
4,785,147	+				+0.6
4,785,148	-				-0.1
4,785,148	-				-0.3
4,785,167	+				-2.4
4,785,167	+				-0.6
4,785,167	+				+0.1
4,785,167	+				+0.1
4,785,167	+				+1.2
4,785,167	+				+0.9
4,785,168	-				-1.3
4,785,168	-				-0.4
4,785,168	-				-0.2
4,785,168	-				+2.2
4,785,168	-				-0.6
4,785,169	+				+0.3
4,785,169	+				+1.1
4,785,169	+				-2.3
4,785,169	+				+1.2
4,785,170	-				-0.8
4,785,171	+				-1.4
4,785,171	+				+1.2
4,785,171	+				+0.7
4,785,172	-				+0.5
4,785,185	+				+0.4
4,785,185	+				+0.6
4,785,190	+				+0.5
4,785,230	+				-0.3
4,785,232	+				+1.6
4,785,259	+				+0.3
4,785,265	+				+1.4
4,785,363	-				+1.2
4,785,368	+				-1.0
4,785,368	+				+0.3
4,785,368	+				+0.4
4,785,368	+				+0.5
4,785,368	+				-0.5
4,785,369	-				-0.4
4,785,372	+				+1.4
4,785,373	-				+1.1
4,785,385	+				-0.7
4,785,403	+		HER17_RS21355	0.13	+0.1
4,785,511	+		HER17_RS21355	0.33	-1.9
4,785,511	+		HER17_RS21355	0.33	+0.8
4,785,560	+		HER17_RS21355	0.42	-1.9
4,785,573	-		HER17_RS21355	0.45	+0.8
4,785,604	+		HER17_RS21355	0.50	+0.9
4,785,605	-		HER17_RS21355	0.51	+0.7
4,785,605	-		HER17_RS21355	0.51	-1.7
4,785,605	-		HER17_RS21355	0.51	-0.8
4,785,607	+		HER17_RS21355	0.51	-2.6
4,785,608	-		HER17_RS21355	0.51	-0.2
4,785,642	-		HER17_RS21355	0.58	-1.1
4,785,673	+		HER17_RS21355	0.63	-3.4
4,785,693	-		HER17_RS21355	0.67	+1.2
4,785,693	-		HER17_RS21355	0.67	-1.1
4,785,721	+		HER17_RS21355	0.73	+0.8
4,785,749	+		HER17_RS21355	0.78	+0.3
4,785,919	-				-0.4
4,785,920	+				+0.6
4,785,921	-				+1.1
4,785,922	+				+0.5
4,785,954	+				-0.3
4,786,055	+				+0.2
4,786,238	-				+1.3
4,786,247	-				-0.0
4,786,391	+				-2.4
4,786,405	+				-0.5
4,786,406	-				-1.1
4,786,406	-				-3.2
4,786,408	+				+0.8
4,786,409	-				-1.3
4,786,457	-				-0.7
4,786,509	-				+1.2
4,786,536	+				+0.3
4,786,537	-				-0.1
4,786,537	-				-2.3
4,786,551	+				+0.6
4,786,552	-				-1.4
4,786,552	-				+0.7
4,786,552	-				+0.5
4,786,571	+				+0.1
4,786,593	+				-0.4
4,786,689	+		HER17_RS21365	0.11	+0.5
4,786,766	+		HER17_RS21365	0.15	+0.1
4,786,766	+		HER17_RS21365	0.15	-0.0
4,786,767	-		HER17_RS21365	0.15	-1.2
4,786,770	+		HER17_RS21365	0.15	+1.6
4,786,770	+		HER17_RS21365	0.15	-2.0
4,786,770	+		HER17_RS21365	0.15	-0.9
4,786,770	+		HER17_RS21365	0.15	+1.0
4,786,771	-		HER17_RS21365	0.16	-1.8
4,786,771	-		HER17_RS21365	0.16	-2.4
4,786,802	+		HER17_RS21365	0.17	+0.5
4,786,863	+		HER17_RS21365	0.21	-0.6
4,786,864	-		HER17_RS21365	0.21	+0.5
4,786,865	+		HER17_RS21365	0.21	+1.1
4,786,865	+		HER17_RS21365	0.21	+0.2
4,786,865	+		HER17_RS21365	0.21	-2.3
4,786,866	-		HER17_RS21365	0.21	-0.5