Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21190

Experiment: M9+glucose+arginine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS21180 and HER17_RS21185 are separated by 27 nucleotidesHER17_RS21185 and HER17_RS21190 overlap by 4 nucleotidesHER17_RS21190 and HER17_RS21195 overlap by 4 nucleotides HER17_RS21180: HER17_RS21180 - TIGR04028 family ABC transporter substrate-binding protein, at 4,741,621 to 4,743,258 _RS21180 HER17_RS21185: HER17_RS21185 - ABC transporter permease, at 4,743,286 to 4,744,230 _RS21185 HER17_RS21190: HER17_RS21190 - ABC transporter permease, at 4,744,227 to 4,745,087 _RS21190 HER17_RS21195: HER17_RS21195 - ABC transporter ATP-binding protein, at 4,745,084 to 4,746,787 _RS21195 Position (kb) 4744 4745 4746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4743.256 kb on + strandat 4743.256 kb on + strandat 4743.256 kb on + strandat 4743.256 kb on + strandat 4743.257 kb on - strandat 4743.257 kb on - strandat 4743.358 kb on - strandat 4743.390 kb on - strand, within HER17_RS21185at 4743.390 kb on - strand, within HER17_RS21185at 4743.390 kb on - strand, within HER17_RS21185at 4743.457 kb on + strand, within HER17_RS21185at 4743.457 kb on + strand, within HER17_RS21185at 4743.457 kb on + strand, within HER17_RS21185at 4743.458 kb on - strand, within HER17_RS21185at 4743.458 kb on - strand, within HER17_RS21185at 4743.487 kb on + strand, within HER17_RS21185at 4743.487 kb on + strand, within HER17_RS21185at 4743.488 kb on - strand, within HER17_RS21185at 4743.509 kb on + strand, within HER17_RS21185at 4743.509 kb on + strand, within HER17_RS21185at 4743.509 kb on + strand, within HER17_RS21185at 4743.510 kb on - strand, within HER17_RS21185at 4743.524 kb on + strand, within HER17_RS21185at 4743.525 kb on - strand, within HER17_RS21185at 4743.525 kb on - strand, within HER17_RS21185at 4743.563 kb on + strand, within HER17_RS21185at 4743.563 kb on + strand, within HER17_RS21185at 4743.563 kb on + strand, within HER17_RS21185at 4743.711 kb on + strand, within HER17_RS21185at 4743.712 kb on - strand, within HER17_RS21185at 4743.747 kb on - strand, within HER17_RS21185at 4743.960 kb on + strand, within HER17_RS21185at 4744.097 kb on - strand, within HER17_RS21185at 4744.226 kb on + strandat 4744.226 kb on + strandat 4744.227 kb on - strandat 4744.227 kb on - strandat 4744.237 kb on + strandat 4744.237 kb on + strandat 4744.237 kb on + strandat 4744.237 kb on + strandat 4744.238 kb on - strandat 4744.346 kb on - strand, within HER17_RS21190at 4744.380 kb on + strand, within HER17_RS21190at 4744.382 kb on + strand, within HER17_RS21190at 4744.397 kb on + strand, within HER17_RS21190at 4744.398 kb on - strand, within HER17_RS21190at 4744.470 kb on + strand, within HER17_RS21190at 4744.471 kb on - strand, within HER17_RS21190at 4744.471 kb on - strand, within HER17_RS21190at 4744.531 kb on + strand, within HER17_RS21190at 4744.686 kb on - strand, within HER17_RS21190at 4744.773 kb on + strand, within HER17_RS21190at 4744.774 kb on - strand, within HER17_RS21190at 4744.830 kb on - strand, within HER17_RS21190at 4744.830 kb on - strand, within HER17_RS21190at 4744.830 kb on - strand, within HER17_RS21190at 4744.980 kb on + strand, within HER17_RS21190at 4744.980 kb on + strand, within HER17_RS21190at 4744.980 kb on + strand, within HER17_RS21190at 4744.980 kb on + strand, within HER17_RS21190at 4744.980 kb on + strand, within HER17_RS21190at 4744.981 kb on - strand, within HER17_RS21190at 4745.032 kb on + strandat 4745.032 kb on + strandat 4745.033 kb on - strandat 4745.092 kb on - strandat 4745.092 kb on - strandat 4745.092 kb on - strandat 4745.103 kb on + strandat 4745.337 kb on + strand, within HER17_RS21195at 4745.338 kb on - strand, within HER17_RS21195at 4745.341 kb on + strand, within HER17_RS21195at 4745.342 kb on - strand, within HER17_RS21195at 4745.342 kb on - strand, within HER17_RS21195at 4745.568 kb on - strand, within HER17_RS21195at 4745.644 kb on + strand, within HER17_RS21195at 4745.644 kb on + strand, within HER17_RS21195at 4745.645 kb on - strand, within HER17_RS21195at 4745.659 kb on + strand, within HER17_RS21195at 4745.692 kb on + strand, within HER17_RS21195at 4745.692 kb on + strand, within HER17_RS21195at 4745.693 kb on - strand, within HER17_RS21195at 4745.693 kb on - strand, within HER17_RS21195at 4745.842 kb on - strand, within HER17_RS21195at 4745.842 kb on - strand, within HER17_RS21195at 4745.842 kb on - strand, within HER17_RS21195at 4745.844 kb on + strand, within HER17_RS21195at 4745.844 kb on + strand, within HER17_RS21195at 4745.844 kb on + strand, within HER17_RS21195at 4745.844 kb on + strand, within HER17_RS21195at 4745.844 kb on + strand, within HER17_RS21195at 4745.844 kb on + strand, within HER17_RS21195at 4745.845 kb on - strand, within HER17_RS21195at 4745.845 kb on - strand, within HER17_RS21195at 4745.845 kb on - strand, within HER17_RS21195at 4745.845 kb on - strand, within HER17_RS21195at 4745.845 kb on - strand, within HER17_RS21195at 4745.845 kb on - strand, within HER17_RS21195at 4745.864 kb on + strand, within HER17_RS21195at 4745.864 kb on + strand, within HER17_RS21195at 4745.865 kb on - strand, within HER17_RS21195at 4745.865 kb on - strand, within HER17_RS21195at 4745.899 kb on - strand, within HER17_RS21195at 4745.929 kb on + strand, within HER17_RS21195at 4745.929 kb on + strand, within HER17_RS21195at 4745.929 kb on + strand, within HER17_RS21195at 4745.929 kb on + strand, within HER17_RS21195at 4745.929 kb on + strand, within HER17_RS21195at 4745.930 kb on - strand, within HER17_RS21195at 4745.930 kb on - strand, within HER17_RS21195at 4745.930 kb on - strand, within HER17_RS21195at 4745.948 kb on - strand, within HER17_RS21195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose+arginine
remove
4,743,256 + -0.5
4,743,256 + -0.1
4,743,256 + -0.1
4,743,256 + +0.4
4,743,257 - +1.2
4,743,257 - -1.2
4,743,358 - -2.1
4,743,390 - HER17_RS21185 0.11 +0.5
4,743,390 - HER17_RS21185 0.11 +0.7
4,743,390 - HER17_RS21185 0.11 +0.7
4,743,457 + HER17_RS21185 0.18 +0.6
4,743,457 + HER17_RS21185 0.18 +0.4
4,743,457 + HER17_RS21185 0.18 -0.1
4,743,458 - HER17_RS21185 0.18 +0.3
4,743,458 - HER17_RS21185 0.18 -1.9
4,743,487 + HER17_RS21185 0.21 +0.5
4,743,487 + HER17_RS21185 0.21 -0.0
4,743,488 - HER17_RS21185 0.21 +0.4
4,743,509 + HER17_RS21185 0.24 +0.8
4,743,509 + HER17_RS21185 0.24 -1.6
4,743,509 + HER17_RS21185 0.24 +2.4
4,743,510 - HER17_RS21185 0.24 -3.8
4,743,524 + HER17_RS21185 0.25 -2.3
4,743,525 - HER17_RS21185 0.25 -0.1
4,743,525 - HER17_RS21185 0.25 -0.5
4,743,563 + HER17_RS21185 0.29 -0.3
4,743,563 + HER17_RS21185 0.29 +0.5
4,743,563 + HER17_RS21185 0.29 -0.5
4,743,711 + HER17_RS21185 0.45 -0.3
4,743,712 - HER17_RS21185 0.45 -0.6
4,743,747 - HER17_RS21185 0.49 +0.4
4,743,960 + HER17_RS21185 0.71 +0.7
4,744,097 - HER17_RS21185 0.86 +0.1
4,744,226 + +0.6
4,744,226 + +0.1
4,744,227 - +0.5
4,744,227 - +0.4
4,744,237 + +0.1
4,744,237 + -1.9
4,744,237 + +0.1
4,744,237 + -1.1
4,744,238 - -0.1
4,744,346 - HER17_RS21190 0.14 -2.4
4,744,380 + HER17_RS21190 0.18 +0.1
4,744,382 + HER17_RS21190 0.18 -0.4
4,744,397 + HER17_RS21190 0.20 -0.2
4,744,398 - HER17_RS21190 0.20 -0.5
4,744,470 + HER17_RS21190 0.28 -1.6
4,744,471 - HER17_RS21190 0.28 +0.6
4,744,471 - HER17_RS21190 0.28 +0.6
4,744,531 + HER17_RS21190 0.35 +0.1
4,744,686 - HER17_RS21190 0.53 -1.4
4,744,773 + HER17_RS21190 0.63 +0.9
4,744,774 - HER17_RS21190 0.64 -0.8
4,744,830 - HER17_RS21190 0.70 -1.4
4,744,830 - HER17_RS21190 0.70 -0.9
4,744,830 - HER17_RS21190 0.70 -0.5
4,744,980 + HER17_RS21190 0.87 +1.2
4,744,980 + HER17_RS21190 0.87 +0.7
4,744,980 + HER17_RS21190 0.87 +0.5
4,744,980 + HER17_RS21190 0.87 -1.4
4,744,980 + HER17_RS21190 0.87 -0.8
4,744,981 - HER17_RS21190 0.88 +1.5
4,745,032 + -0.1
4,745,032 + -0.1
4,745,033 - +0.1
4,745,092 - -0.8
4,745,092 - +0.1
4,745,092 - -0.9
4,745,103 + -2.5
4,745,337 + HER17_RS21195 0.15 +0.5
4,745,338 - HER17_RS21195 0.15 +0.8
4,745,341 + HER17_RS21195 0.15 -1.2
4,745,342 - HER17_RS21195 0.15 +0.5
4,745,342 - HER17_RS21195 0.15 +0.3
4,745,568 - HER17_RS21195 0.28 +0.9
4,745,644 + HER17_RS21195 0.33 +1.1
4,745,644 + HER17_RS21195 0.33 +1.6
4,745,645 - HER17_RS21195 0.33 -0.9
4,745,659 + HER17_RS21195 0.34 -0.2
4,745,692 + HER17_RS21195 0.36 +0.6
4,745,692 + HER17_RS21195 0.36 +0.8
4,745,693 - HER17_RS21195 0.36 -1.9
4,745,693 - HER17_RS21195 0.36 -1.8
4,745,842 - HER17_RS21195 0.44 -1.2
4,745,842 - HER17_RS21195 0.44 +0.1
4,745,842 - HER17_RS21195 0.44 +0.2
4,745,844 + HER17_RS21195 0.45 +0.3
4,745,844 + HER17_RS21195 0.45 +0.1
4,745,844 + HER17_RS21195 0.45 -0.5
4,745,844 + HER17_RS21195 0.45 -0.1
4,745,844 + HER17_RS21195 0.45 -3.5
4,745,844 + HER17_RS21195 0.45 -0.0
4,745,845 - HER17_RS21195 0.45 -3.2
4,745,845 - HER17_RS21195 0.45 +0.1
4,745,845 - HER17_RS21195 0.45 +0.5
4,745,845 - HER17_RS21195 0.45 +0.6
4,745,845 - HER17_RS21195 0.45 -0.7
4,745,845 - HER17_RS21195 0.45 -2.3
4,745,864 + HER17_RS21195 0.46 +0.1
4,745,864 + HER17_RS21195 0.46 +0.4
4,745,865 - HER17_RS21195 0.46 -0.2
4,745,865 - HER17_RS21195 0.46 -0.4
4,745,899 - HER17_RS21195 0.48 +0.2
4,745,929 + HER17_RS21195 0.50 -3.5
4,745,929 + HER17_RS21195 0.50 +1.6
4,745,929 + HER17_RS21195 0.50 +0.1
4,745,929 + HER17_RS21195 0.50 +0.3
4,745,929 + HER17_RS21195 0.50 -0.8
4,745,930 - HER17_RS21195 0.50 -1.0
4,745,930 - HER17_RS21195 0.50 +0.6
4,745,930 - HER17_RS21195 0.50 -0.4
4,745,948 - HER17_RS21195 0.51 -0.7

Or see this region's nucleotide sequence