Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18930

Experiment: M9+glucose+arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS18920 and HER17_RS18925 are separated by 128 nucleotidesHER17_RS18925 and HER17_RS18930 are separated by 92 nucleotidesHER17_RS18930 and HER17_RS18935 are separated by 38 nucleotidesHER17_RS18935 and HER17_RS18940 are separated by 43 nucleotidesHER17_RS18940 and HER17_RS18945 overlap by 4 nucleotides HER17_RS18920: HER17_RS18920 - LysR family transcriptional regulator, at 4,245,349 to 4,246,251 _RS18920 HER17_RS18925: HER17_RS18925 - DUF2798 domain-containing protein, at 4,246,380 to 4,246,643 _RS18925 HER17_RS18930: HER17_RS18930 - phosphonate metabolism protein PhnP, at 4,246,736 to 4,247,521 _RS18930 HER17_RS18935: HER17_RS18935 - ribose 1,5-bisphosphokinase, at 4,247,560 to 4,248,129 _RS18935 HER17_RS18940: HER17_RS18940 - putative phosphonate metabolism protein, at 4,248,173 to 4,248,460 _RS18940 HER17_RS18945: HER17_RS18945 - ATP-binding cassette domain-containing protein, at 4,248,457 to 4,248,678 _RS18945 Position (kb) 4246 4247 4248Strain fitness (log2 ratio) -2 -1 0 1 2at 4245.743 kb on + strand, within HER17_RS18920at 4245.743 kb on + strand, within HER17_RS18920at 4245.743 kb on + strand, within HER17_RS18920at 4245.743 kb on + strand, within HER17_RS18920at 4245.743 kb on + strand, within HER17_RS18920at 4245.744 kb on - strand, within HER17_RS18920at 4245.744 kb on - strand, within HER17_RS18920at 4245.763 kb on + strand, within HER17_RS18920at 4245.765 kb on + strand, within HER17_RS18920at 4245.765 kb on + strand, within HER17_RS18920at 4245.765 kb on + strand, within HER17_RS18920at 4245.766 kb on - strand, within HER17_RS18920at 4245.829 kb on - strand, within HER17_RS18920at 4245.877 kb on - strand, within HER17_RS18920at 4245.894 kb on + strand, within HER17_RS18920at 4246.038 kb on + strand, within HER17_RS18920at 4246.046 kb on - strand, within HER17_RS18920at 4246.153 kb on + strand, within HER17_RS18920at 4246.170 kb on + strandat 4246.170 kb on + strandat 4246.170 kb on + strandat 4246.171 kb on - strandat 4246.171 kb on - strandat 4246.176 kb on + strandat 4246.176 kb on + strandat 4246.176 kb on + strandat 4246.177 kb on - strandat 4246.241 kb on - strandat 4246.252 kb on - strandat 4246.252 kb on - strandat 4246.252 kb on - strandat 4246.311 kb on + strandat 4246.315 kb on - strandat 4246.315 kb on - strandat 4246.322 kb on + strandat 4246.322 kb on + strandat 4246.323 kb on - strandat 4246.323 kb on - strandat 4246.326 kb on + strandat 4246.327 kb on - strandat 4246.334 kb on + strandat 4246.335 kb on - strandat 4246.364 kb on + strandat 4246.374 kb on - strandat 4246.424 kb on + strand, within HER17_RS18925at 4246.444 kb on + strand, within HER17_RS18925at 4246.444 kb on + strand, within HER17_RS18925at 4246.444 kb on + strand, within HER17_RS18925at 4246.445 kb on - strand, within HER17_RS18925at 4246.445 kb on - strand, within HER17_RS18925at 4246.445 kb on - strand, within HER17_RS18925at 4246.445 kb on - strand, within HER17_RS18925at 4246.445 kb on - strand, within HER17_RS18925at 4246.445 kb on - strand, within HER17_RS18925at 4246.456 kb on - strand, within HER17_RS18925at 4246.456 kb on - strand, within HER17_RS18925at 4246.456 kb on - strand, within HER17_RS18925at 4246.456 kb on - strand, within HER17_RS18925at 4246.527 kb on + strand, within HER17_RS18925at 4246.528 kb on - strand, within HER17_RS18925at 4246.601 kb on + strand, within HER17_RS18925at 4246.601 kb on + strand, within HER17_RS18925at 4246.602 kb on - strand, within HER17_RS18925at 4246.602 kb on - strand, within HER17_RS18925at 4246.602 kb on - strand, within HER17_RS18925at 4246.618 kb on + strandat 4246.676 kb on - strandat 4246.695 kb on + strandat 4246.695 kb on + strandat 4246.695 kb on + strandat 4246.696 kb on - strandat 4246.696 kb on - strandat 4246.738 kb on - strandat 4246.762 kb on - strandat 4246.839 kb on + strand, within HER17_RS18930at 4246.839 kb on + strand, within HER17_RS18930at 4246.839 kb on + strand, within HER17_RS18930at 4246.839 kb on + strand, within HER17_RS18930at 4246.840 kb on - strand, within HER17_RS18930at 4246.840 kb on - strand, within HER17_RS18930at 4246.840 kb on - strand, within HER17_RS18930at 4246.947 kb on + strand, within HER17_RS18930at 4246.947 kb on + strand, within HER17_RS18930at 4246.948 kb on - strand, within HER17_RS18930at 4246.948 kb on - strand, within HER17_RS18930at 4246.991 kb on + strand, within HER17_RS18930at 4247.047 kb on - strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.052 kb on + strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.053 kb on - strand, within HER17_RS18930at 4247.057 kb on + strand, within HER17_RS18930at 4247.058 kb on - strand, within HER17_RS18930at 4247.240 kb on + strand, within HER17_RS18930at 4247.266 kb on - strand, within HER17_RS18930at 4247.281 kb on + strand, within HER17_RS18930at 4247.281 kb on + strand, within HER17_RS18930at 4247.281 kb on + strand, within HER17_RS18930at 4247.281 kb on + strand, within HER17_RS18930at 4247.497 kb on + strandat 4247.509 kb on + strandat 4247.509 kb on + strandat 4247.509 kb on + strandat 4247.510 kb on - strandat 4247.510 kb on - strandat 4247.510 kb on - strandat 4247.653 kb on + strand, within HER17_RS18935at 4247.831 kb on + strand, within HER17_RS18935at 4247.832 kb on - strand, within HER17_RS18935at 4247.873 kb on - strand, within HER17_RS18935at 4247.873 kb on - strand, within HER17_RS18935at 4247.891 kb on - strand, within HER17_RS18935at 4247.903 kb on + strand, within HER17_RS18935at 4247.903 kb on + strand, within HER17_RS18935at 4247.903 kb on + strand, within HER17_RS18935at 4247.985 kb on + strand, within HER17_RS18935at 4247.986 kb on - strand, within HER17_RS18935at 4247.986 kb on - strand, within HER17_RS18935at 4248.001 kb on + strand, within HER17_RS18935at 4248.002 kb on - strand, within HER17_RS18935at 4248.023 kb on + strand, within HER17_RS18935at 4248.023 kb on + strand, within HER17_RS18935at 4248.024 kb on - strand, within HER17_RS18935at 4248.024 kb on - strand, within HER17_RS18935at 4248.113 kb on + strandat 4248.253 kb on + strand, within HER17_RS18940at 4248.280 kb on + strand, within HER17_RS18940at 4248.280 kb on + strand, within HER17_RS18940at 4248.300 kb on - strand, within HER17_RS18940at 4248.367 kb on + strand, within HER17_RS18940at 4248.418 kb on + strand, within HER17_RS18940at 4248.419 kb on - strand, within HER17_RS18940at 4248.448 kb on + strandat 4248.449 kb on - strandat 4248.452 kb on - strandat 4248.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glucose+arginine
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4,245,743 + HER17_RS18920 0.44 -1.9
4,245,743 + HER17_RS18920 0.44 +1.0
4,245,743 + HER17_RS18920 0.44 +1.7
4,245,743 + HER17_RS18920 0.44 +0.9
4,245,743 + HER17_RS18920 0.44 +1.1
4,245,744 - HER17_RS18920 0.44 +0.1
4,245,744 - HER17_RS18920 0.44 +0.4
4,245,763 + HER17_RS18920 0.46 +0.1
4,245,765 + HER17_RS18920 0.46 +0.6
4,245,765 + HER17_RS18920 0.46 -2.0
4,245,765 + HER17_RS18920 0.46 -2.0
4,245,766 - HER17_RS18920 0.46 -0.2
4,245,829 - HER17_RS18920 0.53 +0.7
4,245,877 - HER17_RS18920 0.58 +0.4
4,245,894 + HER17_RS18920 0.60 -1.1
4,246,038 + HER17_RS18920 0.76 +0.4
4,246,046 - HER17_RS18920 0.77 +1.6
4,246,153 + HER17_RS18920 0.89 +2.0
4,246,170 + -0.3
4,246,170 + +1.4
4,246,170 + -1.7
4,246,171 - -0.3
4,246,171 - -2.0
4,246,176 + -0.2
4,246,176 + +0.7
4,246,176 + +1.0
4,246,177 - +0.2
4,246,241 - +0.2
4,246,252 - +0.2
4,246,252 - -1.2
4,246,252 - +2.2
4,246,311 + +0.2
4,246,315 - +0.5
4,246,315 - +1.0
4,246,322 + -0.5
4,246,322 + +0.2
4,246,323 - -1.1
4,246,323 - -2.4
4,246,326 + -0.2
4,246,327 - +0.3
4,246,334 + +0.6
4,246,335 - +1.3
4,246,364 + +0.4
4,246,374 - -0.2
4,246,424 + HER17_RS18925 0.17 -0.7
4,246,444 + HER17_RS18925 0.24 +0.2
4,246,444 + HER17_RS18925 0.24 +0.3
4,246,444 + HER17_RS18925 0.24 -0.0
4,246,445 - HER17_RS18925 0.25 +0.7
4,246,445 - HER17_RS18925 0.25 +0.1
4,246,445 - HER17_RS18925 0.25 +0.3
4,246,445 - HER17_RS18925 0.25 +0.2
4,246,445 - HER17_RS18925 0.25 +0.3
4,246,445 - HER17_RS18925 0.25 -1.9
4,246,456 - HER17_RS18925 0.29 -0.2
4,246,456 - HER17_RS18925 0.29 -2.2
4,246,456 - HER17_RS18925 0.29 +1.4
4,246,456 - HER17_RS18925 0.29 -0.6
4,246,527 + HER17_RS18925 0.56 +0.2
4,246,528 - HER17_RS18925 0.56 +0.5
4,246,601 + HER17_RS18925 0.84 +0.8
4,246,601 + HER17_RS18925 0.84 +0.9
4,246,602 - HER17_RS18925 0.84 -0.7
4,246,602 - HER17_RS18925 0.84 +0.6
4,246,602 - HER17_RS18925 0.84 +0.2
4,246,618 + -0.3
4,246,676 - -0.2
4,246,695 + -0.6
4,246,695 + +0.2
4,246,695 + -0.1
4,246,696 - +0.1
4,246,696 - -0.3
4,246,738 - +1.5
4,246,762 - +0.5
4,246,839 + HER17_RS18930 0.13 +0.3
4,246,839 + HER17_RS18930 0.13 +0.7
4,246,839 + HER17_RS18930 0.13 +0.4
4,246,839 + HER17_RS18930 0.13 +1.0
4,246,840 - HER17_RS18930 0.13 +1.0
4,246,840 - HER17_RS18930 0.13 -1.4
4,246,840 - HER17_RS18930 0.13 +0.0
4,246,947 + HER17_RS18930 0.27 +1.1
4,246,947 + HER17_RS18930 0.27 -0.5
4,246,948 - HER17_RS18930 0.27 -0.7
4,246,948 - HER17_RS18930 0.27 -0.8
4,246,991 + HER17_RS18930 0.32 -0.7
4,247,047 - HER17_RS18930 0.40 -2.2
4,247,052 + HER17_RS18930 0.40 +0.2
4,247,052 + HER17_RS18930 0.40 +0.1
4,247,052 + HER17_RS18930 0.40 +1.4
4,247,052 + HER17_RS18930 0.40 -2.2
4,247,052 + HER17_RS18930 0.40 +1.4
4,247,052 + HER17_RS18930 0.40 -1.4
4,247,052 + HER17_RS18930 0.40 +1.1
4,247,052 + HER17_RS18930 0.40 +0.5
4,247,053 - HER17_RS18930 0.40 -2.4
4,247,053 - HER17_RS18930 0.40 +0.6
4,247,053 - HER17_RS18930 0.40 -1.2
4,247,053 - HER17_RS18930 0.40 +0.3
4,247,053 - HER17_RS18930 0.40 +0.0
4,247,053 - HER17_RS18930 0.40 -0.6
4,247,053 - HER17_RS18930 0.40 -0.2
4,247,053 - HER17_RS18930 0.40 +0.5
4,247,057 + HER17_RS18930 0.41 -0.2
4,247,058 - HER17_RS18930 0.41 -0.1
4,247,240 + HER17_RS18930 0.64 +1.0
4,247,266 - HER17_RS18930 0.67 -1.5
4,247,281 + HER17_RS18930 0.69 -1.2
4,247,281 + HER17_RS18930 0.69 -0.6
4,247,281 + HER17_RS18930 0.69 -0.1
4,247,281 + HER17_RS18930 0.69 -1.6
4,247,497 + +0.0
4,247,509 + -2.2
4,247,509 + -1.7
4,247,509 + +1.3
4,247,510 - +0.1
4,247,510 - +0.7
4,247,510 - +0.3
4,247,653 + HER17_RS18935 0.16 -1.6
4,247,831 + HER17_RS18935 0.48 -1.6
4,247,832 - HER17_RS18935 0.48 -1.2
4,247,873 - HER17_RS18935 0.55 -0.4
4,247,873 - HER17_RS18935 0.55 +0.2
4,247,891 - HER17_RS18935 0.58 +0.0
4,247,903 + HER17_RS18935 0.60 -1.4
4,247,903 + HER17_RS18935 0.60 -1.6
4,247,903 + HER17_RS18935 0.60 -1.5
4,247,985 + HER17_RS18935 0.75 -0.2
4,247,986 - HER17_RS18935 0.75 -0.8
4,247,986 - HER17_RS18935 0.75 -1.1
4,248,001 + HER17_RS18935 0.77 +1.6
4,248,002 - HER17_RS18935 0.78 +1.4
4,248,023 + HER17_RS18935 0.81 +1.3
4,248,023 + HER17_RS18935 0.81 +1.6
4,248,024 - HER17_RS18935 0.81 +0.1
4,248,024 - HER17_RS18935 0.81 -1.4
4,248,113 + -0.4
4,248,253 + HER17_RS18940 0.28 -0.0
4,248,280 + HER17_RS18940 0.37 -0.7
4,248,280 + HER17_RS18940 0.37 +0.2
4,248,300 - HER17_RS18940 0.44 -0.1
4,248,367 + HER17_RS18940 0.67 +0.4
4,248,418 + HER17_RS18940 0.85 -0.4
4,248,419 - HER17_RS18940 0.85 -0.0
4,248,448 + +1.1
4,248,449 - -1.7
4,248,452 - -0.6
4,248,452 - +0.7

Or see this region's nucleotide sequence